NO11G01490.1, NO11G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01490.1
Unique NameNO11G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1792
Alignment locationchr11:500262..502053 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:500262..502053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01490.1 vs.
Match: EWM25067.1 (zinc transporter 9 [Nannochloropsis gaditana])

HSP 1 Score: 715.3 bits (1845), Expect = 1.400e-202
Identity = 395/539 (73.28%), Postives = 425/539 (78.85%), Query Frame = 0 
Query:    1 MLRATATTGRRRLGSCSDPVLLRLSLSHYDDYEQDVPRRLPLRSKRRLRQTAGQTACNQHHLL--PLCQPLLRHAFAYHACAAPSLSTSAAGTHRTMRNTMFDRASLIHLLQTQVSSSSLGSELRPPPSRISAGSKRSSSSTSGSKKDKKEISSTFPQTSRQVKEKSEHVVKLALGGNVVITIAKFLAWLHSGSSAMLSESIHSLVDCGNQTLLLIGIRTAATAPDRHHQYGYGKSIYFWSLVSALGTFWLGAGVSLRNSFSDLLNPTVQLEEITWDVWGVLGISFAIDGSVLYQTFQLLRDSKPRHLTLWEHVRRIRDPTTLAVLLEDSGACLGVVMAIVGIGLSQAFANPMFDSIAGCCISGLLAAMGLALARLNERYLLGQAVEPEIVEGIRKLLMARPGIDNVQSVQSQWIGPYTFAYKAEVDFDGTYLAAKLMERYEDEFLGSARLKEDLPVLLAFYAEDVVRTLEREVREVEREIRALHPEAQFIELEPASKDATAFAIDGHREKMLRELEHVTLNQLLIAIAKNVVKQQQKK 538
            ML A + TGRRRLG      LLR  LS  +D   D   RL  R     +Q  G   C +  L   PL +P  +   A +  +A +L        +  R         +H+  +  SS+  G + R P  + S      S+                  TS+QVKEKSEHVVKLALGGNVVITIAKFLAWLHSGSSAMLSESIHSLVD GNQTLLLIGIR AATAPDRHHQYGYGKSIYFWSLVSALGTFWLGAGVSLRNSF DL++PTVQLEEITWDVWGVLG+SF IDGSVLYQT QLLRDSKP+HLTLWEH+RRIRDPTTLAVLLEDSGACLGVVMAIVGIGLS A ANP++DSI G CIS LLAAMGLALARLNERYLLGQAVEPEIV+ IRKLLMARPGIDNVQSVQSQWIGPYTFAYKAEVDFDGTYLAAKLM RYEDEFLGSARLKEDLPVLLAFYAEDVVRTLEREVR+VEREIRA+HPEAQFIELEPASKDATAFAIDGHREKMLRELEH+TLNQLLIAIAKNVVKQQQK+
Sbjct:    1 MLLAASATGRRRLGP-GGTTLLRFGLSQSED---DCDSRLKARLLEWKKQQLGVWVCARGKLPTHPLTRPWHKPYNAAYHISAWALERRHWKRRKDFRPCGAHVTQRMHIPPSSSSSTGRGPQSRRPLDKPSGAPPHDSTKRP---------------TSKQVKEKSEHVVKLALGGNVVITIAKFLAWLHSGSSAMLSESIHSLVDSGNQTLLLIGIRAAATAPDRHHQYGYGKSIYFWSLVSALGTFWLGAGVSLRNSFQDLMSPTVQLEEITWDVWGVLGVSFLIDGSVLYQTMQLLRDSKPKHLTLWEHIRRIRDPTTLAVLLEDSGACLGVVMAIVGIGLSHALANPVYDSIGGLCISSLLAAMGLALARLNERYLLGQAVEPEIVDDIRKLLMARPGIDNVQSVQSQWIGPYTFAYKAEVDFDGTYLAAKLMARYEDEFLGSARLKEDLPVLLAFYAEDVVRTLEREVRDVEREIRAVHPEAQFIELEPASKDATAFAIDGHREKMLRELEHITLNQLLIAIAKNVVKQQQKQ 520
The following BLAST results are available for this feature:
BLAST of NO11G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25067.11.400e-20273.28zinc transporter 9 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01490NO11G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01490.1NO11G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01490.1.cds1NO11G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01490.1 ID=NO11G01490.1|Name=NO11G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp
AAATGACAGATCAGCTTTAGCATCATCGTTACGTACAGGCCCTCCCCCCT
TTCGCCTCGCGATGCTGCGTGCCACCGCCACAACCGGGCGGCGGCGGCTT
GGGAGCTGCAGTGACCCTGTCCTCCTCCGCTTGAGTCTCAGCCATTACGA
CGACTACGAGCAAGATGTTCCGCGGCGGCTGCCATTGCGGAGCAAGCGGC
GGCTTCGGCAAACAGCAGGGCAAACAGCATGTAACCAGCATCATCTCCTC
CCCCTATGTCAACCACTCCTGCGGCATGCTTTCGCCTACCACGCATGTGC
CGCACCCTCTCTATCAACTTCCGCTGCCGGAACACATCGAACAATGCGAA
ATACTATGTTTGATCGGGCTTCCTTGATCCACCTTCTACAAACACAAGTC
TCCTCCTCTTCCCTCGGCAGCGAGCTTAGGCCCCCACCAAGCAGAATCAG
CGCCGGGAGTAAGAGAAGCAGCAGCAGCACCAGCGGCAGCAAGAAGGACA
AGAAAGAAATTTCCTCCACCTTTCCCCAAACATCCAGACAGGTCAAGGAG
AAATCCGAGCACGTCGTCAAGCTCGCCTTGGGGGGAAACGTAGTCATAAC
CATTGCCAAATTCTTAGCCTGGCTGCACAGTGGTTCTTCCGCCATGCTCT
CTGAAAGCATACACTCCCTGGTTGACTGCGGTAATCAAACCCTATTGCTC
ATCGGCATCCGCACTGCTGCCACCGCTCCGGATAGACACCACCAATATGG
GTATGGCAAGTCAATATATTTTTGGTCCCTTGTCTCGGCACTAGGAACCT
TCTGGCTGGGCGCCGGTGTGTCCCTACGCAACAGCTTCTCGGATTTGTTA
AATCCCACGGTGCAACTGGAGGAGATCACCTGGGACGTGTGGGGGGTGCT
CGGGATCTCGTTCGCGATCGATGGGAGCGTCTTGTACCAGACCTTTCAAC
TGTTGAGGGATTCCAAGCCGAGGCATTTGACGCTTTGGGAGCATGTCCGA
AGGATCCGGGATCCGACCACCCTAGCGGTCTTGCTTGAAGATTCCGGGGC
GTGCCTTGGTGTGGTGATGGCGATTGTGGGCATCGGTCTGTCGCAGGCTT
TTGCGAACCCGATGTTCGACAGCATTGCTGGGTGCTGCATCTCCGGCCTT
TTGGCAGCCATGGGCTTAGCGCTGGCTAGACTGAATGAAAGGTATCTGTT
GGGACAAGCTGTGGAACCTGAGATAGTCGAAGGGATTCGTAAGTTGCTGA
TGGCGAGGCCGGGTATTGACAATGTGCAGAGCGTGCAGAGTCAGTGGATT
GGGCCCTACACGTTTGCCTACAAGGCGGAGGTGGATTTTGATGGGACGTA
CTTGGCGGCGAAGCTTATGGAAAGATACGAAGATGAGTTTTTGGGGTCAG
CACGGCTGAAAGAGGACTTGCCGGTTTTGTTGGCGTTTTATGCAGAGGAT
GTGGTGAGGACGTTGGAGAGGGAGGTGAGAGAGGTTGAGCGGGAGATAAG
GGCCTTGCACCCCGAGGCGCAATTCATAGAGTTAGAGCCGGCTTCGAAGG
ATGCAACAGCGTTTGCAATTGATGGGCATCGGGAGAAGATGTTGAGGGAA
TTGGAGCACGTGACGTTGAACCAGTTGTTGATTGCCATCGCGAAGAACGT
GGTGAAGCAACAGCAGAAGAAGGATGGAGGGGAGGAGACGAAGAAGGACA
ATAGCAAGAAGTAAGCATAGGGCTACAGATGCGTGTAACAAAAAGCGAGG
ACAAATAAACTACCAAAATTTTGACTTCAAAAAGGGTCTTTT
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protein sequence of NO11G01490.1

>NO11G01490.1-protein ID=NO11G01490.1-protein|Name=NO11G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MLRATATTGRRRLGSCSDPVLLRLSLSHYDDYEQDVPRRLPLRSKRRLRQ
TAGQTACNQHHLLPLCQPLLRHAFAYHACAAPSLSTSAAGTHRTMRNTMF
DRASLIHLLQTQVSSSSLGSELRPPPSRISAGSKRSSSSTSGSKKDKKEI
SSTFPQTSRQVKEKSEHVVKLALGGNVVITIAKFLAWLHSGSSAMLSESI
HSLVDCGNQTLLLIGIRTAATAPDRHHQYGYGKSIYFWSLVSALGTFWLG
AGVSLRNSFSDLLNPTVQLEEITWDVWGVLGISFAIDGSVLYQTFQLLRD
SKPRHLTLWEHVRRIRDPTTLAVLLEDSGACLGVVMAIVGIGLSQAFANP
MFDSIAGCCISGLLAAMGLALARLNERYLLGQAVEPEIVEGIRKLLMARP
GIDNVQSVQSQWIGPYTFAYKAEVDFDGTYLAAKLMERYEDEFLGSARLK
EDLPVLLAFYAEDVVRTLEREVREVEREIRALHPEAQFIELEPASKDATA
FAIDGHREKMLRELEHVTLNQLLIAIAKNVVKQQQKKDGGEETKKDNSKK
*
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mRNA from alignment at chr11:500262..502053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01490.1 ID=NO11G01490.1|Name=NO11G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at chr11:500262..502053- (Nannochloropsis oceanica)
AAATGACAGATCAGCTTTAGCATCATCGTTACGTACAGGCCCTCCCCCCT
TTCGCCTCGCGATGCTGCGTGCCACCGCCACAACCGGGCGGCGGCGGCTT
GGGAGCTGCAGTGACCCTGTCCTCCTCCGCTTGAGTCTCAGCCATTACGA
CGACTACGAGCAAGATGTTCCGCGGCGGCTGCCATTGCGGAGCAAGCGGC
GGCTTCGGCAAACAGCAGGGCAAACAGCATGTAACCAGCATCATCTCCTC
CCCCTATGTCAACCACTCCTGCGGCATGCTTTCGCCTACCACGCATGTGC
CGCACCCTCTCTATCAACTTCCGCTGCCGGAACACATCGAACAATGCGAA
ATACTATGTTTGATCGGGCTTCCTTGATCCACCTTCTACAAACACAAGTC
TCCTCCTCTTCCCTCGGCAGCGAGCTTAGGCCCCCACCAAGCAGAATCAG
CGCCGGGAGTAAGAGAAGCAGCAGCAGCACCAGCGGCAGCAAGAAGGACA
AGAAAGAAATTTCCTCCACCTTTCCCCAAACATCCAGACAGGTCAAGGAG
AAATCCGAGCACGTCGTCAAGCTCGCCTTGGGGGGAAACGTAGTCATAAC
CATTGCCAAATTCTTAGCCTGGCTGCACAGTGGTTCTTCCGCCATGCTCT
CTGAAAGCATACACTCCCTGGTTGACTGCGGTAATCAAACCCTATTGCTC
ATCGGCATCCGCACTGCTGCCACCGCTCCGGATAGACACCACCAATATGG
GTATGGCAAGTCAATATATTTTTGGTCCCTTGTCTCGGCACTAGGAACCT
TCTGGCTGGGCGCCGGTGTGTCCCTACGCAACAGCTTCTCGGATTTGTTA
AATCCCACGGTGCAACTGGAGGAGATCACCTGGGACGTGTGGGGGGTGCT
CGGGATCTCGTTCGCGATCGATGGGAGCGTCTTGTACCAGACCTTTCAAC
TGTTGAGGGATTCCAAGCCGAGGCATTTGACGCTTTGGGAGCATGTCCGA
AGGATCCGGGATCCGACCACCCTAGCGGTCTTGCTTGAAGATTCCGGGGC
GTGCCTTGGTGTGGTGATGGCGATTGTGGGCATCGGTCTGTCGCAGGCTT
TTGCGAACCCGATGTTCGACAGCATTGCTGGGTGCTGCATCTCCGGCCTT
TTGGCAGCCATGGGCTTAGCGCTGGCTAGACTGAATGAAAGGTATCTGTT
GGGACAAGCTGTGGAACCTGAGATAGTCGAAGGGATTCGTAAGTTGCTGA
TGGCGAGGCCGGGTATTGACAATGTGCAGAGCGTGCAGAGTCAGTGGATT
GGGCCCTACACGTTTGCCTACAAGGCGGAGGTGGATTTTGATGGGACGTA
CTTGGCGGCGAAGCTTATGGAAAGATACGAAGATGAGTTTTTGGGGTCAG
CACGGCTGAAAGAGGACTTGCCGGTTTTGTTGGCGTTTTATGCAGAGGAT
GTGGTGAGGACGTTGGAGAGGGAGGTGAGAGAGGTTGAGCGGGAGATAAG
GGCCTTGCACCCCGAGGCGCAATTCATAGAGTTAGAGCCGGCTTCGAAGG
ATGCAACAGCGTTTGCAATTGATGGGCATCGGGAGAAGATGTTGAGGGAA
TTGGAGCACGTGACGTTGAACCAGTTGTTGATTGCCATCGCGAAGAACGT
GGTGAAGCAACAGCAGAAGAAGGATGGAGGGGAGGAGACGAAGAAGGACA
ATAGCAAGAAGTAAGCATAGGGCTACAGATGCGTGTAACAAAAAGCGAGG
ACAAATAAACTACCAAAATTTTGACTTCAAAAAGGGTCTTTT
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Coding sequence (CDS) from alignment at chr11:500262..502053-

>NO11G01490.1 ID=NO11G01490.1|Name=NO11G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at chr11:500262..502053- (Nannochloropsis oceanica)
ATGCTGCGTGCCACCGCCACAACCGGGCGGCGGCGGCTTGGGAGCTGCAG
TGACCCTGTCCTCCTCCGCTTGAGTCTCAGCCATTACGACGACTACGAGC
AAGATGTTCCGCGGCGGCTGCCATTGCGGAGCAAGCGGCGGCTTCGGCAA
ACAGCAGGGCAAACAGCATGTAACCAGCATCATCTCCTCCCCCTATGTCA
ACCACTCCTGCGGCATGCTTTCGCCTACCACGCATGTGCCGCACCCTCTC
TATCAACTTCCGCTGCCGGAACACATCGAACAATGCGAAATACTATGTTT
GATCGGGCTTCCTTGATCCACCTTCTACAAACACAAGTCTCCTCCTCTTC
CCTCGGCAGCGAGCTTAGGCCCCCACCAAGCAGAATCAGCGCCGGGAGTA
AGAGAAGCAGCAGCAGCACCAGCGGCAGCAAGAAGGACAAGAAAGAAATT
TCCTCCACCTTTCCCCAAACATCCAGACAGGTCAAGGAGAAATCCGAGCA
CGTCGTCAAGCTCGCCTTGGGGGGAAACGTAGTCATAACCATTGCCAAAT
TCTTAGCCTGGCTGCACAGTGGTTCTTCCGCCATGCTCTCTGAAAGCATA
CACTCCCTGGTTGACTGCGGTAATCAAACCCTATTGCTCATCGGCATCCG
CACTGCTGCCACCGCTCCGGATAGACACCACCAATATGGGTATGGCAAGT
CAATATATTTTTGGTCCCTTGTCTCGGCACTAGGAACCTTCTGGCTGGGC
GCCGGTGTGTCCCTACGCAACAGCTTCTCGGATTTGTTAAATCCCACGGT
GCAACTGGAGGAGATCACCTGGGACGTGTGGGGGGTGCTCGGGATCTCGT
TCGCGATCGATGGGAGCGTCTTGTACCAGACCTTTCAACTGTTGAGGGAT
TCCAAGCCGAGGCATTTGACGCTTTGGGAGCATGTCCGAAGGATCCGGGA
TCCGACCACCCTAGCGGTCTTGCTTGAAGATTCCGGGGCGTGCCTTGGTG
TGGTGATGGCGATTGTGGGCATCGGTCTGTCGCAGGCTTTTGCGAACCCG
ATGTTCGACAGCATTGCTGGGTGCTGCATCTCCGGCCTTTTGGCAGCCAT
GGGCTTAGCGCTGGCTAGACTGAATGAAAGGTATCTGTTGGGACAAGCTG
TGGAACCTGAGATAGTCGAAGGGATTCGTAAGTTGCTGATGGCGAGGCCG
GGTATTGACAATGTGCAGAGCGTGCAGAGTCAGTGGATTGGGCCCTACAC
GTTTGCCTACAAGGCGGAGGTGGATTTTGATGGGACGTACTTGGCGGCGA
AGCTTATGGAAAGATACGAAGATGAGTTTTTGGGGTCAGCACGGCTGAAA
GAGGACTTGCCGGTTTTGTTGGCGTTTTATGCAGAGGATGTGGTGAGGAC
GTTGGAGAGGGAGGTGAGAGAGGTTGAGCGGGAGATAAGGGCCTTGCACC
CCGAGGCGCAATTCATAGAGTTAGAGCCGGCTTCGAAGGATGCAACAGCG
TTTGCAATTGATGGGCATCGGGAGAAGATGTTGAGGGAATTGGAGCACGT
GACGTTGAACCAGTTGTTGATTGCCATCGCGAAGAACGTGGTGAAGCAAC
AGCAGAAGAAGGATGGAGGGGAGGAGACGAAGAAGGACAATAGCAAGAAG
TAA
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Synonyms
Publications