NO11G01460.1, NO11G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01460.1
Unique NameNO11G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1711
Alignment locationchr11:490976..492972 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:490976..492972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01460.1 vs.
Match: EWM25074.1 (extrinsic protein in photosystem ii [Nannochloropsis gaditana])

HSP 1 Score: 254.6 bits (649), Expect = 3.000e-64
Identity = 124/181 (68.51%), Postives = 151/181 (83.43%), Query Frame = 0 
Query:   41 MRVLSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFRKGSPLFD 222
            MRV+S  A +A+ GSA+AF+PQ P+ ++K+++GKA+QKL + PA+VLG+Y GPMIQPVHADGSVS+TTV RA G+YGPRV+ALKDAVAKGDF A+ K DGA  L+NSGAFALN+ Q+  V   Y+DVRAAV KKDA  LK+AWA+YF EAGLDK NPF L + GQSYSGDFDFR+GSPLFD
Sbjct:    1 MRVISTAAFLALLGSAIAFIPQAPQSTQKMDLGKAVQKLLVGPALVLGVYGGPMIQPVHADGSVSSTTVQRASGLYGPRVIALKDAVAKGDFAALDKADGAIRLFNSGAFALNKPQKLKVQALYNDVRAAVVKKDASRLKTAWAMYFKEAGLDKTNPFSLKDAGQSYSGDFDFRRGSPLFD 181
The following BLAST results are available for this feature:
BLAST of NO11G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25074.13.000e-6468.51extrinsic protein in photosystem ii [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01460NO11G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01460.1NO11G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01460.1.cds1NO11G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01460.1.cds2NO11G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01460.1 ID=NO11G01460.1|Name=NO11G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
GCTAGGTGCACATATTTTTTAGCATTAGCAGCAGTGCGGCTTTCGTGACG
TAGCGAAGCTCGAAGGAGGAAAGCTTGGCTTTTGACCAGTTTATACGTTG
AATGGATACGAGCCTGCTCAAATTATCAAGTCAGTCATCTTGTTCAGTGG
TCATGCACAAAAGTTAGTCACGTTTTTGGCACGGTACTTGACTTGTTGCA
CCAAAAAATCGAATAGATCAATCAGGTGGGCATGCCGTACCGTCCATGTC
TGCTGGGTCGTGAGATCAAGTACAAAGTCACATACATAACCCTAACCCAC
AGAACCGTACACGACTTATCAATATCATAATCCATAAAGATTGACAGAAG
AGTATGAACTTACAAGAAAGCATTTTTTTTAACAGGAAGTTTGTCCAATC
TGAGGTTCTCGGAACTGGTTGAAGGGCGAGTCCATCGCACGGCTGTCGCT
TGCCGGCGCCAGAAACTTTAAGCTGATTCAGCGGAGACTTTCCATTGCCT
CTCTAGGGCAAGCTCATGTGATTTGTGGTTAGGATATCATTCAGTCATGA
GTGGGCTCCTAAAACCTCCCGATCAAATCGCGTCATAACCGTGTCTTCAA
TCGGAAGGATTTGTCATTGTGGTGTCGTCAACGTGCATCAATACCCTCAT
AGCGATCTGACACCACATGCACGTGCCGGGACTTGCAGGCTTCTCTAGGC
CTTTAATTCGCATACTTTCAAATATCGCTCACTTCTTTCCTCCTTCCACA
TGCTCCTCGACACCCCGCATACCTCGTCTAGCCATCATGCGTGTCCTCTC
CATGACTGCCCTGGTGGCAATTGCTGGATCTGCCGTGGCCTTCGTGCCCC
AGGGCCCCAAACCCAGCGAGAAAATTAACATTGGCAAAGCGCTCCAAAAA
TTGGCCTTGGCTCCGGCGGTGGTCCTCGGCATCTATGCCGGCCCCATGAT
CCAACCCGTACACGCTGACGGCAGTGTCTCCGCCACTACCGTCCACCGTG
CACAAGGGATATACGGGCCTCGCGTGATGGCGCTCAAGGACGCGGTCGCC
AAGGGAGACTTCGACGCGATGAAGAAGGAGGATGGTGCGGCCACCCTTTA
CAATTCTGGCGCGTTTGCCCTGAACCGCGTGCAGCAGAAGGTGGTGGCGA
AGGCTTACGACGATGTCCGCGCTGCTGTTGCCAAGAAGGATGCGGGGGCG
CTTAAGTCGGCATGGGCTGTGTATTTCCACGAGGCGGGTTTGGACAAGCC
TAACCCTTTTAGGTTGGACGAGCCCGGGCAGAGTTACTCGGGTGACTTTG
ATTTCAGGAAAGGCTCGCCCTTGTTTGATAGGTATGCCGCGGAGTTGGCG
GGTGAAAGTGGGAAATAATAGGACAGGAAATGGAGAAGACGGAAAGGGGA
AGCGAGGGAGGGAGCAAGCATGGGTGGAGAGGCAACAATGGGATGGTCAT
GATATGGTGCGACCTAGAATGTCTTTGAAGTGGAGGAAAGAGATAAATGG
AAGGGTGATTTAAGGGATGGAGATATCTCGGTCGTGAACGCTTGGTGAAA
GGAAAGAGACGCATTACATACCATTCGAGTGTTTATATTGGGAGTGAGGT
CGAACGCGCACCGTTTCTTGTCTGCTGCAAGTGCGGTCGATCGGTTCACT
ACTCTCATGTGCGCTTCAGCAACTATGCAGATGCATTTGATTTATGTATG
AACTAGCCTGG
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protein sequence of NO11G01460.1

>NO11G01460.1-protein ID=NO11G01460.1-protein|Name=NO11G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MHVPGLAGFSRPLIRILSNIAHFFPPSTCSSTPRIPRLAIMRVLSMTALV
AIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHA
DGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF
ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRL
DEPGQSYSGDFDFRKGSPLFDRYAAELAGESGK*
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mRNA from alignment at chr11:490976..492972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01460.1 ID=NO11G01460.1|Name=NO11G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp|location=Sequence derived from alignment at chr11:490976..492972+ (Nannochloropsis oceanica)
GCTAGGTGCACATATTTTTTAGCATTAGCAGCAGTGCGGCTTTCGTGACG
TAGCGAAGCTCGAAGGAGGAAAGCTTGGCTTTTGACCAGTTTATACGTTG
AATGGATACGAGCCTGCTCAAATTATCAAGTCAGTCATCTTGTTCAGTGG
TCATGCACAAAAGTTAGTCACGTTTTTGGCACGGTACTTGACTTGTTGCA
CCAAAAAATCGAATAGATCAATCAGGTGGGCATGCCGTACCGTCCATGTC
TGCTGGGTCGTGAGATCAAGTACAAAGTCACATACATAACCCTAACCCAC
AGAACCGTACACGACTTATCAATATCATAATCCATAAAGATTGACAGAAG
AGTATGAACTTACAAGAAAGCATTTTTTTTAACAGGAAGTTTGTCCAATC
TGAGGTTCTCGGAACTGGTTGAAGGGCGAGTCCATCGCACGGCTGTCGCT
TGCCGGCGCCAGAAACTTTAAGCTGATTCAGCGGAGACTTTCCATTGCCT
CTCTAGGGCAAGCTCATGTGATTTGTGGTTAGGATATCATTCAGTCATGA
GTGGGCTCCTAAAACCTCCCGATCAAATCGCGTCATAACCGTGTCTTCAA
TCGGAAGGATTTGTCATTGTGGTGTCGTCAACGTGCATCAATACCCTCAT
AGCGATCTGACACCACATGCACGTGCCGGGACTTGCAGGCTTCTCTAGGC
CTTTAATTCGCATACTTTCAAATATCGCTCACTTCTTTCCTCCTTCCACA
TGCTCCTCGACACCCCGCATACCTCGTCTAGCCATCATGCGTGTCCTCTC
CATGACTGCCCTGGTGGCAATTGCTGGATCTGCCGTGGCCTTCGTGCCCC
AGGGCCCCAAACCCAGGTAAGTACTTGGCAACGCGAGAGATTTGTAGATG
AGTGTCGGTGCGTGGGCTTGTGTCACGCGAAGTGGCGAGAGTCACAGTGA
TGTTTCCTCCGGTCCGAGCAGAGGATCTTTTCAGTTGGCGGTGTTAGTAC
GAGCCTTAATTTGCGTGTATGCATGTGTACACTCACATATGTACATACTC
AAACGTCAAAGTTGGGACACATTCATTTTATAATGCAGCATTCTTCCTCT
TCGTTCCTCTGCACTTACTGATCATTTCCTCTTCCCTACCTTCCTTCCGC
AGCGAGAAAATTAACATTGGCAAAGCGCTCCAAAAATTGGCCTTGGCTCC
GGCGGTGGTCCTCGGCATCTATGCCGGCCCCATGATCCAACCCGTACACG
CTGACGGCAGTGTCTCCGCCACTACCGTCCACCGTGCACAAGGGATATAC
GGGCCTCGCGTGATGGCGCTCAAGGACGCGGTCGCCAAGGGAGACTTCGA
CGCGATGAAGAAGGAGGATGGTGCGGCCACCCTTTACAATTCTGGCGCGT
TTGCCCTGAACCGCGTGCAGCAGAAGGTGGTGGCGAAGGCTTACGACGAT
GTCCGCGCTGCTGTTGCCAAGAAGGATGCGGGGGCGCTTAAGTCGGCATG
GGCTGTGTATTTCCACGAGGCGGGTTTGGACAAGCCTAACCCTTTTAGGT
TGGACGAGCCCGGGCAGAGTTACTCGGGTGACTTTGATTTCAGGAAAGGC
TCGCCCTTGTTTGATAGGTATGCCGCGGAGTTGGCGGGTGAAAGTGGGAA
ATAATAGGACAGGAAATGGAGAAGACGGAAAGGGGAAGCGAGGGAGGGAG
CAAGCATGGGTGGAGAGGCAACAATGGGATGGTCATGATATGGTGCGACC
TAGAATGTCTTTGAAGTGGAGGAAAGAGATAAATGGAAGGGTGATTTAAG
GGATGGAGATATCTCGGTCGTGAACGCTTGGTGAAAGGAAAGAGACGCAT
TACATACCATTCGAGTGTTTATATTGGGAGTGAGGTCGAACGCGCACCGT
TTCTTGTCTGCTGCAAGTGCGGTCGATCGGTTCACTACTCTCATGTGCGC
TTCAGCAACTATGCAGATGCATTTGATTTATGTATGAACTAGCCTGG
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Coding sequence (CDS) from alignment at chr11:490976..492972+

>NO11G01460.1 ID=NO11G01460.1|Name=NO11G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr11:490976..492972+ (Nannochloropsis oceanica)
ATGCACGTGCCGGGACTTGCAGGCTTCTCTAGGCCTTTAATTCGCATACT
TTCAAATATCGCTCACTTCTTTCCTCCTTCCACATGCTCCTCGACACCCC
GCATACCTCGTCTAGCCATCATGCGTGTCCTCTCCATGACTGCCCTGGTG
GCAATTGCTGGATCTGCCGTGGCCTTCGTGCCCCAGGGCCCCAAACCCAG
CGAGAAAATTAACATTGGCAAAGCGCTCCAAAAATTGGCCTTGGCTCCGG
CGGTGGTCCTCGGCATCTATGCCGGCCCCATGATCCAACCCGTACACGCT
GACGGCAGTGTCTCCGCCACTACCGTCCACCGTGCACAAGGGATATACGG
GCCTCGCGTGATGGCGCTCAAGGACGCGGTCGCCAAGGGAGACTTCGACG
CGATGAAGAAGGAGGATGGTGCGGCCACCCTTTACAATTCTGGCGCGTTT
GCCCTGAACCGCGTGCAGCAGAAGGTGGTGGCGAAGGCTTACGACGATGT
CCGCGCTGCTGTTGCCAAGAAGGATGCGGGGGCGCTTAAGTCGGCATGGG
CTGTGTATTTCCACGAGGCGGGTTTGGACAAGCCTAACCCTTTTAGGTTG
GACGAGCCCGGGCAGAGTTACTCGGGTGACTTTGATTTCAGGAAAGGCTC
GCCCTTGTTTGATAGGTATGCCGCGGAGTTGGCGGGTGAAAGTGGGAAAT
AA
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Synonyms
Publications