NO11G01450.1, NO11G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01450.1
Unique NameNO11G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1765
Alignment locationchr11:488874..490939 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:488874..490939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01450.1 vs.
Match: EWM25082.1 (bifunctional coenzyme a synthase [Nannochloropsis gaditana])

HSP 1 Score: 575.5 bits (1482), Expect = 1.600e-160
Identity = 314/483 (65.01%), Postives = 369/483 (76.40%), Query Frame = 0
Query:    1 MGRSECNHYIGLGTQGAGVAAFVTTVLGYTLVHKMLCAPWCRPSSSSAPRGLRGMNTSPPPTLAAKQSSNSNVHPTA--LPYQVGLLDLTVPSKHTGGGGSSQGYTNLLLANDICIEKAVQSVSDTLYIYLREDPTAVSASASASYLPPSESAPLSPTTPELRVYLSELYGQLWDVCYLHKNLPLDVRILYNTTEQASLSSSSTPLPSAAST---SAASNSLSPAAAPAAVSGKKSKKEKGSKEKDAAELSATSSLLSKSSPRQKNIPTSWEEALLKPELQVVFIQHKNANSEQLSNARREALGLPPVQIEWLDDSVHTALSTSFYYLEDEDSHIPHFPRVAVGGTFDRLHNGHKKLLTLAACVCQTELTIGITSTEMLANKKNAAQIEPLADRIEAVRAFLHSVFPNLPLDIVVLKDPFGPPVHNEKFDAIVVSSETIAGAAKINELRVEKGFKPLVVVVTRRTVSSLLSSTFIRNNLPPRR 479
            MGRSE  +Y GLG QGAG+AAF+TTVLGYTLV+KML APW RPSSSS+ R +R M+ S        +SS+S + P++  LPYQVGLLDLTVPSKH+G       Y NLLLANDICIEKAVQSVS+TLY+YLREDP AV+A+A+A+    + S P+SPTTPELRVYLSELYGQLWDVC LH+NLPLDVR+LYNTTE A   + + P+    +T      S SL  A+ P+ V    S  +K                    + R    PTSWEE LLKPELQVVF +H ++ S++L+ A+R ALGLPPV +EWLD++ H ALST FYYLEDE + IPHFPRVA+GGTFDRLHNGHKKLL+LAAC+CQ+ LTIGITSTEMLA KKNA QIEPL +RI+AV++FL SVFPNL +D+VVLKDPFGPPVH+  FDAIVVSSETIAGAAKINE+R EKG  PLV+VVTRRTVSSLLSSTFIRNNLP RR
Sbjct:    1 MGRSENGYYAGLGGQGAGLAAFLTTVLGYTLVNKMLSAPWSRPSSSSS-RAIRSMDRSSLGLAGPPKSSSSGMAPSSHSLPYQVGLLDLTVPSKHSGN------YNNLLLANDICIEKAVQSVSETLYVYLREDPAAVAAAATAAISNDAPSVPVSPTTPELRVYLSELYGQLWDVCNLHRNLPLDVRVLYNTTEPALPVAPALPVDKTLATPGLQEMSASLHTASVPSPVPTPPSSAQK--------------------AHRPGENPTSWEEVLLKPELQVVFTRHSSSGSDELTCAKRAALGLPPVHVEWLDEATHVALSTPFYYLEDEKTCIPHFPRVALGGTFDRLHNGHKKLLSLAACICQSRLTIGITSTEMLAKKKNAGQIEPLEERIDAVQSFLLSVFPNLAVDVVVLKDPFGPPVHDPNFDAIVVSSETIAGAAKINEIRAEKGMAPLVIVVTRRTVSSLLSSTFIRNNLPARR 456          
The following BLAST results are available for this feature:
BLAST of NO11G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25082.11.600e-16065.01bifunctional coenzyme a synthase [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01450NO11G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01450.1NO11G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01450.1.cds1NO11G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01450.1.cds2NO11G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01450.1.cds3NO11G01450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01450.1 ID=NO11G01450.1|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp
CGGCGAATGCCCCTGGCCTGGCCCTCTGCCACTTAAAAGTTTTCTCCCAC
CTGAAGTCGCGTCCCCGTTTCACATGTACTTGCACGCACTTCACAGGAAG
TGACAGGGCCGTTTTCTCAAGTTACGGGGTCTCTTTATCGAGGCCCTGTC
GTATATTCCTAGCTTTACTCCTGACGCCTCTGATCATTATCACGCGCCGC
ATCAACAGGCAAGGGTCATGGGACGCTCCGAGTGCAACCACTACATTGGG
CTGGGCACCCAAGGCGCCGGAGTGGCTGCTTTTGTGACGACAGTACTGGG
CTACACGCTTGTTCACAAAATGCTCTGCGCCCCCTGGTGCCGTCCTTCCT
CTTCCTCTGCCCCTCGTGGCCTCCGCGGCATGAACACATCACCACCACCG
ACCCTGGCGGCCAAGCAGTCATCAAATTCCAACGTCCATCCAACAGCTTT
GCCTTACCAAGTGGGACTTCTCGATTTGACTGTTCCCAGCAAACACACTG
GCGGTGGCGGCAGTAGTCAAGGCTACACAAACCTTTTGCTCGCCAACGAC
ATATGTATTGAGAAAGCCGTTCAATCCGTGAGTGACACGCTGTACATATA
CCTTCGTGAGGACCCCACCGCTGTGTCGGCTTCTGCTTCTGCTTCTTATT
TACCTCCCTCGGAAAGTGCCCCGCTCAGTCCGACCACCCCCGAGTTGCGT
GTGTACCTTTCGGAGCTCTATGGGCAGCTGTGGGATGTGTGTTATCTGCA
CAAAAATCTGCCCTTGGATGTGCGGATTCTGTACAATACCACGGAGCAGG
CGTCCCTCTCTTCGTCTTCTACTCCGTTGCCTTCTGCTGCCTCTACTTCT
GCTGCCTCTAATTCGCTCTCTCCTGCTGCTGCTCCTGCTGCTGTGTCAGG
CAAGAAGAGCAAGAAAGAAAAAGGTAGCAAGGAGAAAGATGCCGCTGAAC
TGTCAGCAACATCATCGCTACTATCAAAGTCTTCGCCAAGACAAAAAAAT
ATTCCCACTTCGTGGGAAGAAGCGTTGCTGAAGCCTGAGCTCCAAGTGGT
CTTCATCCAACATAAGAACGCCAACTCGGAACAGCTCTCGAATGCGAGGC
GAGAAGCATTGGGTCTCCCCCCTGTGCAGATCGAATGGCTTGACGACAGC
GTCCACACAGCTCTCTCCACTTCCTTTTATTACTTGGAAGACGAAGACTC
CCATATTCCACACTTTCCGCGTGTGGCCGTCGGTGGAACCTTCGATCGCC
TGCATAATGGACATAAAAAGCTATTAACACTCGCGGCGTGTGTCTGCCAA
ACGGAACTTACCATCGGGATCACCAGCACGGAGATGCTGGCCAACAAAAA
AAACGCGGCGCAAATCGAGCCCTTGGCCGATAGGATAGAAGCAGTACGAG
CATTTCTTCACTCGGTGTTTCCCAACCTGCCTCTGGACATCGTGGTATTG
AAAGACCCGTTTGGCCCTCCTGTGCATAATGAGAAATTCGATGCCATTGT
AGTGAGTTCAGAAACGATTGCAGGCGCGGCCAAAATCAATGAATTACGGG
TGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGGTAACAAGGAGGACGGTG
AGTAGTCTTTTGTCTTCGACGTTTATTCGGAACAATCTGCCGCCGAGACG
GAAGCAGGGGAAGTAGGAGACTGGGGATGAGAGGAGCTTTGTGTTTGTAT
GAAAAAAAAGGCGGGGAATGTGTGTGCTGCAACAAGATGATGTATGATAA
CCTTCAAAAGAAAGC
back to top

protein sequence of NO11G01450.1

>NO11G01450.1-protein ID=NO11G01450.1-protein|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MGRSECNHYIGLGTQGAGVAAFVTTVLGYTLVHKMLCAPWCRPSSSSAPR
GLRGMNTSPPPTLAAKQSSNSNVHPTALPYQVGLLDLTVPSKHTGGGGSS
QGYTNLLLANDICIEKAVQSVSDTLYIYLREDPTAVSASASASYLPPSES
APLSPTTPELRVYLSELYGQLWDVCYLHKNLPLDVRILYNTTEQASLSSS
STPLPSAASTSAASNSLSPAAAPAAVSGKKSKKEKGSKEKDAAELSATSS
LLSKSSPRQKNIPTSWEEALLKPELQVVFIQHKNANSEQLSNARREALGL
PPVQIEWLDDSVHTALSTSFYYLEDEDSHIPHFPRVAVGGTFDRLHNGHK
KLLTLAACVCQTELTIGITSTEMLANKKNAAQIEPLADRIEAVRAFLHSV
FPNLPLDIVVLKDPFGPPVHNEKFDAIVVSSETIAGAAKINELRVEKGFK
PLVVVVTRRTVSSLLSSTFIRNNLPPRRKQGK*
back to top

mRNA from alignment at chr11:488874..490939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01450.1 ID=NO11G01450.1|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at chr11:488874..490939+ (Nannochloropsis oceanica)
CGGCGAATGCCCCTGGCCTGGCCCTCTGCCACTTAAAAGTTTTCTCCCAC CTGAAGTCGCGTCCCCGTTTCACATGTACTTGCACGCACTTCACAGGAAG TGACAGGGCCGTTTTCTCAAGTTACGGGGTCTCTTTATCGAGGCCCTGTC GTATATTCCTAGCTTTACTCCTGACGCCTCTGATCATTATCACGCGCCGC ATCAACAGGCAAGGGTCATGGGACGCTCCGAGTGCAACCACTACATTGGG CTGGGCACCCAAGGCGCCGGAGTGGCTGCTTTTGTGACGACAGTACTGGG CTACACGCTTGTGTACGTATGCTGGAGGGCCTGGGTTTGGGAGGGGTAGA GGGAGGCAAATACCGATGTTCTGGTGTGCTAATGCACCTTCTGCTGCCAC CAGCTCATGTTCCTTTTGAAACCAGTTGAGACTGGTACAACCACAACATA ATAATGCCAGATGAGTCTTATCGTTTCTTCCCTCCATTTTTGCCCATACA GTCACAAAATGCTCTGCGCCCCCTGGTGCCGTCCTTCCTCTTCCTCTGCC CCTCGTGGCCTCCGCGGCATGAACACATCACCACCACCGACCCTGGCGGC CAAGCAGTCATCAAATTCCAACGTCCATCCAACAGCTTTGCCTTACCAAG TGGGACTTCTCGATTTGACTGTTCCCAGCAAACACACTGGCGGTGGCGGC AGTAGTCAAGGCTACACAAACCTTTTGCTCGCCAACGACATATGTATTGA GAAAGCCGTTCAATCCGTGAGTGACACGCTGTACATATACCTTCGTGAGG ACCCCACCGCTGTGTCGGCTTCTGCTTCTGCTTCTTATTTACCTCCCTCG GAAAGTGCCCCGCTCAGTCCGACCACCCCCGAGTTGCGTGTGTACCTTTC GGAGCTCTATGGGCAGCTGTGGGATGTGTGTTATCTGCACAAAAATCTGC CCTTGGATGTGCGGATTCTGTACAATACCACGGAGCAGGCGTCCCTCTCT TCGTCTTCTACTCCGTTGCCTTCTGCTGCCTCTACTTCTGCTGCCTCTAA TTCGCTCTCTCCTGCTGCTGCTCCTGCTGCTGTGTCAGGCAAGAAGAGCA AGAAAGAAAAAGGTAGCAAGGAGAAAGATGCCGCTGAACTGTCAGCAACA TCATCGCTACTATCAAAGTCTTCGCCAAGACAAAAAAATATTCCCACTTC GTGGGAAGAAGCGTTGCTGAAGCCTGAGCTCCAAGTGGTCTTCATCCAAC ATAAGAACGCCAACTCGGAACAGCTCTCGAATGCGAGGCGAGAAGCATTG GTGAGTAGGAGTCGAAAGGAATGAAAGACGAAAGGGGAAAGAATGCTGAT TTTTATACCATGTCATTGTATGATTACACATATGTTCACTCTTTCCTTCC TCATTCCCTCAGGGTCTCCCCCCTGTGCAGATCGAATGGCTTGACGACAG CGTCCACACAGCTCTCTCCACTTCCTTTTATTACTTGGAAGACGAAGACT CCCATATTCCACACTTTCCGCGTGTGGCCGTCGGTGGAACCTTCGATCGC CTGCATAATGGACATAAAAAGCTATTAACACTCGCGGCGTGTGTCTGCCA AACGGAACTTACCATCGGGATCACCAGCACGGAGATGCTGGCCAACAAAA AAAACGCGGCGCAAATCGAGCCCTTGGCCGATAGGATAGAAGCAGTACGA GCATTTCTTCACTCGGTGTTTCCCAACCTGCCTCTGGACATCGTGGTATT GAAAGACCCGTTTGGCCCTCCTGTGCATAATGAGAAATTCGATGCCATTG TAGTGAGTTCAGAAACGATTGCAGGCGCGGCCAAAATCAATGAATTACGG GTGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGGTAACAAGGAGGACGGT GAGTAGTCTTTTGTCTTCGACGTTTATTCGGAACAATCTGCCGCCGAGAC GGAAGCAGGGGAAGTAGGAGACTGGGGATGAGAGGAGCTTTGTGTTTGTA TGAAAAAAAAGGCGGGGAATGTGTGTGCTGCAACAAGATGATGTATGATA ACCTTCAAAAGAAAGC
back to top

Coding sequence (CDS) from alignment at chr11:488874..490939+

>NO11G01450.1 ID=NO11G01450.1|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr11:488874..490939+ (Nannochloropsis oceanica)
ATGGGACGCTCCGAGTGCAACCACTACATTGGGCTGGGCACCCAAGGCGC
CGGAGTGGCTGCTTTTGTGACGACAGTACTGGGCTACACGCTTGTTCACA
AAATGCTCTGCGCCCCCTGGTGCCGTCCTTCCTCTTCCTCTGCCCCTCGT
GGCCTCCGCGGCATGAACACATCACCACCACCGACCCTGGCGGCCAAGCA
GTCATCAAATTCCAACGTCCATCCAACAGCTTTGCCTTACCAAGTGGGAC
TTCTCGATTTGACTGTTCCCAGCAAACACACTGGCGGTGGCGGCAGTAGT
CAAGGCTACACAAACCTTTTGCTCGCCAACGACATATGTATTGAGAAAGC
CGTTCAATCCGTGAGTGACACGCTGTACATATACCTTCGTGAGGACCCCA
CCGCTGTGTCGGCTTCTGCTTCTGCTTCTTATTTACCTCCCTCGGAAAGT
GCCCCGCTCAGTCCGACCACCCCCGAGTTGCGTGTGTACCTTTCGGAGCT
CTATGGGCAGCTGTGGGATGTGTGTTATCTGCACAAAAATCTGCCCTTGG
ATGTGCGGATTCTGTACAATACCACGGAGCAGGCGTCCCTCTCTTCGTCT
TCTACTCCGTTGCCTTCTGCTGCCTCTACTTCTGCTGCCTCTAATTCGCT
CTCTCCTGCTGCTGCTCCTGCTGCTGTGTCAGGCAAGAAGAGCAAGAAAG
AAAAAGGTAGCAAGGAGAAAGATGCCGCTGAACTGTCAGCAACATCATCG
CTACTATCAAAGTCTTCGCCAAGACAAAAAAATATTCCCACTTCGTGGGA
AGAAGCGTTGCTGAAGCCTGAGCTCCAAGTGGTCTTCATCCAACATAAGA
ACGCCAACTCGGAACAGCTCTCGAATGCGAGGCGAGAAGCATTGGGTCTC
CCCCCTGTGCAGATCGAATGGCTTGACGACAGCGTCCACACAGCTCTCTC
CACTTCCTTTTATTACTTGGAAGACGAAGACTCCCATATTCCACACTTTC
CGCGTGTGGCCGTCGGTGGAACCTTCGATCGCCTGCATAATGGACATAAA
AAGCTATTAACACTCGCGGCGTGTGTCTGCCAAACGGAACTTACCATCGG
GATCACCAGCACGGAGATGCTGGCCAACAAAAAAAACGCGGCGCAAATCG
AGCCCTTGGCCGATAGGATAGAAGCAGTACGAGCATTTCTTCACTCGGTG
TTTCCCAACCTGCCTCTGGACATCGTGGTATTGAAAGACCCGTTTGGCCC
TCCTGTGCATAATGAGAAATTCGATGCCATTGTAGTGAGTTCAGAAACGA
TTGCAGGCGCGGCCAAAATCAATGAATTACGGGTGGAGAAAGGATTTAAG
CCGTTGGTAGTAGTGGTAACAAGGAGGACGGTGAGTAGTCTTTTGTCTTC
GACGTTTATTCGGAACAATCTGCCGCCGAGACGGAAGCAGGGGAAGTAG
back to top
Synonyms
Publications