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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:488874..490939 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01450.1 vs.
Match: EWM25082.1 (bifunctional coenzyme a synthase [Nannochloropsis gaditana]) HSP 1 Score: 575.5 bits (1482), Expect = 1.600e-160 Identity = 314/483 (65.01%), Postives = 369/483 (76.40%), Query Frame = 0
Query: 1 MGRSECNHYIGLGTQGAGVAAFVTTVLGYTLVHKMLCAPWCRPSSSSAPRGLRGMNTSPPPTLAAKQSSNSNVHPTA--LPYQVGLLDLTVPSKHTGGGGSSQGYTNLLLANDICIEKAVQSVSDTLYIYLREDPTAVSASASASYLPPSESAPLSPTTPELRVYLSELYGQLWDVCYLHKNLPLDVRILYNTTEQASLSSSSTPLPSAAST---SAASNSLSPAAAPAAVSGKKSKKEKGSKEKDAAELSATSSLLSKSSPRQKNIPTSWEEALLKPELQVVFIQHKNANSEQLSNARREALGLPPVQIEWLDDSVHTALSTSFYYLEDEDSHIPHFPRVAVGGTFDRLHNGHKKLLTLAACVCQTELTIGITSTEMLANKKNAAQIEPLADRIEAVRAFLHSVFPNLPLDIVVLKDPFGPPVHNEKFDAIVVSSETIAGAAKINELRVEKGFKPLVVVVTRRTVSSLLSSTFIRNNLPPRR 479
MGRSE +Y GLG QGAG+AAF+TTVLGYTLV+KML APW RPSSSS+ R +R M+ S +SS+S + P++ LPYQVGLLDLTVPSKH+G Y NLLLANDICIEKAVQSVS+TLY+YLREDP AV+A+A+A+ + S P+SPTTPELRVYLSELYGQLWDVC LH+NLPLDVR+LYNTTE A + + P+ +T S SL A+ P+ V S +K + R PTSWEE LLKPELQVVF +H ++ S++L+ A+R ALGLPPV +EWLD++ H ALST FYYLEDE + IPHFPRVA+GGTFDRLHNGHKKLL+LAAC+CQ+ LTIGITSTEMLA KKNA QIEPL +RI+AV++FL SVFPNL +D+VVLKDPFGPPVH+ FDAIVVSSETIAGAAKINE+R EKG PLV+VVTRRTVSSLLSSTFIRNNLP RR
Sbjct: 1 MGRSENGYYAGLGGQGAGLAAFLTTVLGYTLVNKMLSAPWSRPSSSSS-RAIRSMDRSSLGLAGPPKSSSSGMAPSSHSLPYQVGLLDLTVPSKHSGN------YNNLLLANDICIEKAVQSVSETLYVYLREDPAAVAAAATAAISNDAPSVPVSPTTPELRVYLSELYGQLWDVCNLHRNLPLDVRVLYNTTEPALPVAPALPVDKTLATPGLQEMSASLHTASVPSPVPTPPSSAQK--------------------AHRPGENPTSWEEVLLKPELQVVFTRHSSSGSDELTCAKRAALGLPPVHVEWLDEATHVALSTPFYYLEDEKTCIPHFPRVALGGTFDRLHNGHKKLLSLAACICQSRLTIGITSTEMLAKKKNAGQIEPLEERIDAVQSFLLSVFPNLAVDVVVLKDPFGPPVHDPNFDAIVVSSETIAGAAKINEIRAEKGMAPLVIVVTRRTVSSLLSSTFIRNNLPARR 456
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01450.1 ID=NO11G01450.1|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp CGGCGAATGCCCCTGGCCTGGCCCTCTGCCACTTAAAAGTTTTCTCCCAC CTGAAGTCGCGTCCCCGTTTCACATGTACTTGCACGCACTTCACAGGAAG TGACAGGGCCGTTTTCTCAAGTTACGGGGTCTCTTTATCGAGGCCCTGTC GTATATTCCTAGCTTTACTCCTGACGCCTCTGATCATTATCACGCGCCGC ATCAACAGGCAAGGGTCATGGGACGCTCCGAGTGCAACCACTACATTGGG CTGGGCACCCAAGGCGCCGGAGTGGCTGCTTTTGTGACGACAGTACTGGG CTACACGCTTGTTCACAAAATGCTCTGCGCCCCCTGGTGCCGTCCTTCCT CTTCCTCTGCCCCTCGTGGCCTCCGCGGCATGAACACATCACCACCACCG ACCCTGGCGGCCAAGCAGTCATCAAATTCCAACGTCCATCCAACAGCTTT GCCTTACCAAGTGGGACTTCTCGATTTGACTGTTCCCAGCAAACACACTG GCGGTGGCGGCAGTAGTCAAGGCTACACAAACCTTTTGCTCGCCAACGAC ATATGTATTGAGAAAGCCGTTCAATCCGTGAGTGACACGCTGTACATATA CCTTCGTGAGGACCCCACCGCTGTGTCGGCTTCTGCTTCTGCTTCTTATT TACCTCCCTCGGAAAGTGCCCCGCTCAGTCCGACCACCCCCGAGTTGCGT GTGTACCTTTCGGAGCTCTATGGGCAGCTGTGGGATGTGTGTTATCTGCA CAAAAATCTGCCCTTGGATGTGCGGATTCTGTACAATACCACGGAGCAGG CGTCCCTCTCTTCGTCTTCTACTCCGTTGCCTTCTGCTGCCTCTACTTCT GCTGCCTCTAATTCGCTCTCTCCTGCTGCTGCTCCTGCTGCTGTGTCAGG CAAGAAGAGCAAGAAAGAAAAAGGTAGCAAGGAGAAAGATGCCGCTGAAC TGTCAGCAACATCATCGCTACTATCAAAGTCTTCGCCAAGACAAAAAAAT ATTCCCACTTCGTGGGAAGAAGCGTTGCTGAAGCCTGAGCTCCAAGTGGT CTTCATCCAACATAAGAACGCCAACTCGGAACAGCTCTCGAATGCGAGGC GAGAAGCATTGGGTCTCCCCCCTGTGCAGATCGAATGGCTTGACGACAGC GTCCACACAGCTCTCTCCACTTCCTTTTATTACTTGGAAGACGAAGACTC CCATATTCCACACTTTCCGCGTGTGGCCGTCGGTGGAACCTTCGATCGCC TGCATAATGGACATAAAAAGCTATTAACACTCGCGGCGTGTGTCTGCCAA ACGGAACTTACCATCGGGATCACCAGCACGGAGATGCTGGCCAACAAAAA AAACGCGGCGCAAATCGAGCCCTTGGCCGATAGGATAGAAGCAGTACGAG CATTTCTTCACTCGGTGTTTCCCAACCTGCCTCTGGACATCGTGGTATTG AAAGACCCGTTTGGCCCTCCTGTGCATAATGAGAAATTCGATGCCATTGT AGTGAGTTCAGAAACGATTGCAGGCGCGGCCAAAATCAATGAATTACGGG TGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGGTAACAAGGAGGACGGTG AGTAGTCTTTTGTCTTCGACGTTTATTCGGAACAATCTGCCGCCGAGACG GAAGCAGGGGAAGTAGGAGACTGGGGATGAGAGGAGCTTTGTGTTTGTAT GAAAAAAAAGGCGGGGAATGTGTGTGCTGCAACAAGATGATGTATGATAA CCTTCAAAAGAAAGC back to topprotein sequence of NO11G01450.1 >NO11G01450.1-protein ID=NO11G01450.1-protein|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp MGRSECNHYIGLGTQGAGVAAFVTTVLGYTLVHKMLCAPWCRPSSSSAPR GLRGMNTSPPPTLAAKQSSNSNVHPTALPYQVGLLDLTVPSKHTGGGGSS QGYTNLLLANDICIEKAVQSVSDTLYIYLREDPTAVSASASASYLPPSES APLSPTTPELRVYLSELYGQLWDVCYLHKNLPLDVRILYNTTEQASLSSS STPLPSAASTSAASNSLSPAAAPAAVSGKKSKKEKGSKEKDAAELSATSS LLSKSSPRQKNIPTSWEEALLKPELQVVFIQHKNANSEQLSNARREALGL PPVQIEWLDDSVHTALSTSFYYLEDEDSHIPHFPRVAVGGTFDRLHNGHK KLLTLAACVCQTELTIGITSTEMLANKKNAAQIEPLADRIEAVRAFLHSV FPNLPLDIVVLKDPFGPPVHNEKFDAIVVSSETIAGAAKINELRVEKGFK PLVVVVTRRTVSSLLSSTFIRNNLPPRRKQGK* back to topmRNA from alignment at chr11:488874..490939+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01450.1 ID=NO11G01450.1|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at chr11:488874..490939+ (Nannochloropsis oceanica) CGGCGAATGCCCCTGGCCTGGCCCTCTGCCACTTAAAAGTTTTCTCCCAC
CTGAAGTCGCGTCCCCGTTTCACATGTACTTGCACGCACTTCACAGGAAG
TGACAGGGCCGTTTTCTCAAGTTACGGGGTCTCTTTATCGAGGCCCTGTC
GTATATTCCTAGCTTTACTCCTGACGCCTCTGATCATTATCACGCGCCGC
ATCAACAGGCAAGGGTCATGGGACGCTCCGAGTGCAACCACTACATTGGG
CTGGGCACCCAAGGCGCCGGAGTGGCTGCTTTTGTGACGACAGTACTGGG
CTACACGCTTGTGTACGTATGCTGGAGGGCCTGGGTTTGGGAGGGGTAGA
GGGAGGCAAATACCGATGTTCTGGTGTGCTAATGCACCTTCTGCTGCCAC
CAGCTCATGTTCCTTTTGAAACCAGTTGAGACTGGTACAACCACAACATA
ATAATGCCAGATGAGTCTTATCGTTTCTTCCCTCCATTTTTGCCCATACA
GTCACAAAATGCTCTGCGCCCCCTGGTGCCGTCCTTCCTCTTCCTCTGCC
CCTCGTGGCCTCCGCGGCATGAACACATCACCACCACCGACCCTGGCGGC
CAAGCAGTCATCAAATTCCAACGTCCATCCAACAGCTTTGCCTTACCAAG
TGGGACTTCTCGATTTGACTGTTCCCAGCAAACACACTGGCGGTGGCGGC
AGTAGTCAAGGCTACACAAACCTTTTGCTCGCCAACGACATATGTATTGA
GAAAGCCGTTCAATCCGTGAGTGACACGCTGTACATATACCTTCGTGAGG
ACCCCACCGCTGTGTCGGCTTCTGCTTCTGCTTCTTATTTACCTCCCTCG
GAAAGTGCCCCGCTCAGTCCGACCACCCCCGAGTTGCGTGTGTACCTTTC
GGAGCTCTATGGGCAGCTGTGGGATGTGTGTTATCTGCACAAAAATCTGC
CCTTGGATGTGCGGATTCTGTACAATACCACGGAGCAGGCGTCCCTCTCT
TCGTCTTCTACTCCGTTGCCTTCTGCTGCCTCTACTTCTGCTGCCTCTAA
TTCGCTCTCTCCTGCTGCTGCTCCTGCTGCTGTGTCAGGCAAGAAGAGCA
AGAAAGAAAAAGGTAGCAAGGAGAAAGATGCCGCTGAACTGTCAGCAACA
TCATCGCTACTATCAAAGTCTTCGCCAAGACAAAAAAATATTCCCACTTC
GTGGGAAGAAGCGTTGCTGAAGCCTGAGCTCCAAGTGGTCTTCATCCAAC
ATAAGAACGCCAACTCGGAACAGCTCTCGAATGCGAGGCGAGAAGCATTG
GTGAGTAGGAGTCGAAAGGAATGAAAGACGAAAGGGGAAAGAATGCTGAT
TTTTATACCATGTCATTGTATGATTACACATATGTTCACTCTTTCCTTCC
TCATTCCCTCAGGGTCTCCCCCCTGTGCAGATCGAATGGCTTGACGACAG
CGTCCACACAGCTCTCTCCACTTCCTTTTATTACTTGGAAGACGAAGACT
CCCATATTCCACACTTTCCGCGTGTGGCCGTCGGTGGAACCTTCGATCGC
CTGCATAATGGACATAAAAAGCTATTAACACTCGCGGCGTGTGTCTGCCA
AACGGAACTTACCATCGGGATCACCAGCACGGAGATGCTGGCCAACAAAA
AAAACGCGGCGCAAATCGAGCCCTTGGCCGATAGGATAGAAGCAGTACGA
GCATTTCTTCACTCGGTGTTTCCCAACCTGCCTCTGGACATCGTGGTATT
GAAAGACCCGTTTGGCCCTCCTGTGCATAATGAGAAATTCGATGCCATTG
TAGTGAGTTCAGAAACGATTGCAGGCGCGGCCAAAATCAATGAATTACGG
GTGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGGTAACAAGGAGGACGGT
GAGTAGTCTTTTGTCTTCGACGTTTATTCGGAACAATCTGCCGCCGAGAC
GGAAGCAGGGGAAGTAGGAGACTGGGGATGAGAGGAGCTTTGTGTTTGTA
TGAAAAAAAAGGCGGGGAATGTGTGTGCTGCAACAAGATGATGTATGATA
ACCTTCAAAAGAAAGC back to topCoding sequence (CDS) from alignment at chr11:488874..490939+ >NO11G01450.1 ID=NO11G01450.1|Name=NO11G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr11:488874..490939+ (Nannochloropsis oceanica) ATGGGACGCTCCGAGTGCAACCACTACATTGGGCTGGGCACCCAAGGCGC CGGAGTGGCTGCTTTTGTGACGACAGTACTGGGCTACACGCTTGTTCACA AAATGCTCTGCGCCCCCTGGTGCCGTCCTTCCTCTTCCTCTGCCCCTCGT GGCCTCCGCGGCATGAACACATCACCACCACCGACCCTGGCGGCCAAGCA GTCATCAAATTCCAACGTCCATCCAACAGCTTTGCCTTACCAAGTGGGAC TTCTCGATTTGACTGTTCCCAGCAAACACACTGGCGGTGGCGGCAGTAGT CAAGGCTACACAAACCTTTTGCTCGCCAACGACATATGTATTGAGAAAGC CGTTCAATCCGTGAGTGACACGCTGTACATATACCTTCGTGAGGACCCCA CCGCTGTGTCGGCTTCTGCTTCTGCTTCTTATTTACCTCCCTCGGAAAGT GCCCCGCTCAGTCCGACCACCCCCGAGTTGCGTGTGTACCTTTCGGAGCT CTATGGGCAGCTGTGGGATGTGTGTTATCTGCACAAAAATCTGCCCTTGG ATGTGCGGATTCTGTACAATACCACGGAGCAGGCGTCCCTCTCTTCGTCT TCTACTCCGTTGCCTTCTGCTGCCTCTACTTCTGCTGCCTCTAATTCGCT CTCTCCTGCTGCTGCTCCTGCTGCTGTGTCAGGCAAGAAGAGCAAGAAAG AAAAAGGTAGCAAGGAGAAAGATGCCGCTGAACTGTCAGCAACATCATCG CTACTATCAAAGTCTTCGCCAAGACAAAAAAATATTCCCACTTCGTGGGA AGAAGCGTTGCTGAAGCCTGAGCTCCAAGTGGTCTTCATCCAACATAAGA ACGCCAACTCGGAACAGCTCTCGAATGCGAGGCGAGAAGCATTGGGTCTC CCCCCTGTGCAGATCGAATGGCTTGACGACAGCGTCCACACAGCTCTCTC CACTTCCTTTTATTACTTGGAAGACGAAGACTCCCATATTCCACACTTTC CGCGTGTGGCCGTCGGTGGAACCTTCGATCGCCTGCATAATGGACATAAA AAGCTATTAACACTCGCGGCGTGTGTCTGCCAAACGGAACTTACCATCGG GATCACCAGCACGGAGATGCTGGCCAACAAAAAAAACGCGGCGCAAATCG AGCCCTTGGCCGATAGGATAGAAGCAGTACGAGCATTTCTTCACTCGGTG TTTCCCAACCTGCCTCTGGACATCGTGGTATTGAAAGACCCGTTTGGCCC TCCTGTGCATAATGAGAAATTCGATGCCATTGTAGTGAGTTCAGAAACGA TTGCAGGCGCGGCCAAAATCAATGAATTACGGGTGGAGAAAGGATTTAAG CCGTTGGTAGTAGTGGTAACAAGGAGGACGGTGAGTAGTCTTTTGTCTTC GACGTTTATTCGGAACAATCTGCCGCCGAGACGGAAGCAGGGGAAGTAG back to top
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