NO11G01370.1, NO11G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01370.1
Unique NameNO11G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length444
Alignment locationchr11:474738..475181 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:474738..475181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01370.1 vs.
Match: EWM25066.1 (transcription elongation factor spt5 [Nannochloropsis gaditana])

HSP 1 Score: 234.6 bits (597), Expect = 2.000e-58
Identity = 121/155 (78.06%), Postives = 132/155 (85.16%), Query Frame = 0
Query:    1 MVRIKGKSEFKGQTGKVRSVKENVVLVDIESGTKPKTIRVGRESVAEDVPTKGTGGAGAGRAGSDAYSMGTGMTPAWTYGRTPMHGGMTPMYGAATPMHGPNTPALHSGGGQTPAYAGAATPALYGGGGQ--------TPRHEGAYTPRHQYHDG 148
            +VRIKGKSEFKGQTGKVRSVK+NVV VDIESGT+PKT+RV RE+VAED P     GA  GRAG++AYS+GTG TPAWTYGRTPMHGGMTPMYGAATPM+G  TPALHSGGGQTPAY+G+ TPALYGGGGQ        TPRHEGAYTPRHQY DG
Sbjct:  791 VVRIKGKSEFKGQTGKVRSVKDNVVFVDIESGTRPKTVRVPREAVAEDAPA--VAGAAGGRAGAEAYSLGTGTTPAWTYGRTPMHGGMTPMYGAATPMYGGATPALHSGGGQTPAYSGSQTPALYGGGGQTPRHEGAYTPRHEGAYTPRHQYQDG 943          
The following BLAST results are available for this feature:
BLAST of NO11G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25066.12.000e-5878.06transcription elongation factor spt5 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01370NO11G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01370.1NO11G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01370.1.cds1NO11G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01370.1 ID=NO11G01370.1|Name=NO11G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=444bp
ATGGTGAGAATTAAAGGGAAGAGTGAGTTCAAAGGGCAGACAGGCAAGGT
GAGGAGTGTAAAGGAGAACGTGGTGTTGGTCGACATCGAGAGCGGGACCA
AGCCGAAGACCATTCGAGTGGGTCGAGAATCCGTAGCGGAGGACGTGCCA
ACTAAGGGGACGGGAGGTGCCGGGGCAGGAAGGGCTGGATCGGATGCCTA
TTCCATGGGCACCGGGATGACTCCTGCCTGGACGTATGGGAGGACGCCGA
TGCACGGGGGAATGACCCCCATGTACGGAGCGGCTACTCCCATGCATGGG
CCCAACACTCCGGCTCTACACTCGGGGGGAGGCCAGACGCCTGCCTATGC
GGGGGCGGCGACTCCGGCGTTGTACGGTGGGGGGGGGCAGACCCCTCGAC
ATGAGGGGGCCTACACTCCCAGGCATCAGTATCATGATGGATAG
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protein sequence of NO11G01370.1

>NO11G01370.1-protein ID=NO11G01370.1-protein|Name=NO11G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MVRIKGKSEFKGQTGKVRSVKENVVLVDIESGTKPKTIRVGRESVAEDVP
TKGTGGAGAGRAGSDAYSMGTGMTPAWTYGRTPMHGGMTPMYGAATPMHG
PNTPALHSGGGQTPAYAGAATPALYGGGGQTPRHEGAYTPRHQYHDG*
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mRNA from alignment at chr11:474738..475181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01370.1 ID=NO11G01370.1|Name=NO11G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=444bp|location=Sequence derived from alignment at chr11:474738..475181+ (Nannochloropsis oceanica)
ATGGTGAGAATTAAAGGGAAGAGTGAGTTCAAAGGGCAGACAGGCAAGGT GAGGAGTGTAAAGGAGAACGTGGTGTTGGTCGACATCGAGAGCGGGACCA AGCCGAAGACCATTCGAGTGGGTCGAGAATCCGTAGCGGAGGACGTGCCA ACTAAGGGGACGGGAGGTGCCGGGGCAGGAAGGGCTGGATCGGATGCCTA TTCCATGGGCACCGGGATGACTCCTGCCTGGACGTATGGGAGGACGCCGA TGCACGGGGGAATGACCCCCATGTACGGAGCGGCTACTCCCATGCATGGG CCCAACACTCCGGCTCTACACTCGGGGGGAGGCCAGACGCCTGCCTATGC GGGGGCGGCGACTCCGGCGTTGTACGGTGGGGGGGGGCAGACCCCTCGAC ATGAGGGGGCCTACACTCCCAGGCATCAGTATCATGATGGATAG
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Coding sequence (CDS) from alignment at chr11:474738..475181+

>NO11G01370.1 ID=NO11G01370.1|Name=NO11G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at chr11:474738..475181+ (Nannochloropsis oceanica)
ATGGTGAGAATTAAAGGGAAGAGTGAGTTCAAAGGGCAGACAGGCAAGGT
GAGGAGTGTAAAGGAGAACGTGGTGTTGGTCGACATCGAGAGCGGGACCA
AGCCGAAGACCATTCGAGTGGGTCGAGAATCCGTAGCGGAGGACGTGCCA
ACTAAGGGGACGGGAGGTGCCGGGGCAGGAAGGGCTGGATCGGATGCCTA
TTCCATGGGCACCGGGATGACTCCTGCCTGGACGTATGGGAGGACGCCGA
TGCACGGGGGAATGACCCCCATGTACGGAGCGGCTACTCCCATGCATGGG
CCCAACACTCCGGCTCTACACTCGGGGGGAGGCCAGACGCCTGCCTATGC
GGGGGCGGCGACTCCGGCGTTGTACGGTGGGGGGGGGCAGACCCCTCGAC
ATGAGGGGGCCTACACTCCCAGGCATCAGTATCATGATGGATAG
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Synonyms
Publications