NO11G01310.1, NO11G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01310.1
Unique NameNO11G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2120
Alignment locationchr11:455795..458035 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:455795..458035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G01310.1 vs.
Match: EWM25117.1 (wd repeat-containing protein 74 [Nannochloropsis gaditana])

HSP 1 Score: 547.4 bits (1409), Expect = 5.200e-152
Identity = 314/526 (59.70%), Postives = 378/526 (71.86%), Query Frame = 0 
Query:   68 MRIITGDDGGLLKSIDLEAQRIVVAGRQQRARAIRALCWARNGTIFAAARQDGVISLWEDGVQMPHLLKICKGIINADVVGMASTGGETIQSEAEELLVVAHEDGKVKLLAPFQSTADQEKDVLVAEWQLKAPLTCMALGSPSSGLVAVGGKERELGLYDLSTGEITWEARNVPHDKLSLRQPVWVTAAHFID---SDDEGKAGKIVAIGTGYKQVRIYDIRESNRRPVRMMDLPEGYRITTLCSG--KSSSSRSNELVSGDAGGNVYRLDVGKMAVVGRMEGPAGSIRGLVRHSSPSLPFVALAGLDRMARVYDLRKPRKEAFRFYLKQRLTAVLFSRQGRRGKKGKAEEEEEEARAVLPAADDELDAMEDDVGSLDEEE----------GEEEEEEIGERGSDDEETEGGKKDRVRVQRIYENEE------------------DDEKEEKDYEEEEEEDESDDEEKVTFGHRNDG-MNVELNIVGELDEGDEEDSLGGV-QETRKGG-------RKAPAKRPRR 552
            MRIITGD+GGLLKSIDLE QRIVVAGRQ+RAR IRALCW+R G ++AAAR DGV++LWED   +P L + CKG +N DV+GMAST     + E EE LVVAHE+GK+K+LAP+QS     K + + EWQ+K PLTCMA    S+ +VA GGKERELGLYD+STG   WEARNV HDKLSLRQPVWVTA HF+D     + G AG++VAIGTGYKQVRIYD+R  +RRPVR M+LPEGYRIT L SG  + ++   +ELVSGDAGG VYRLDVGKMA++GRMEGPAGS+RGL RH +P+LPFVALAGLDRMARVYDLR+PRKEAFRFYLKQRLTAVLF++QGR+G KG AEE +EE RA      +    MEDDV SLD+EE          GEEEE+    R     +T   K++  ++QR+YE+EE                  D+E+EE+D EE+EE  E DDE+KV FG RNDG +++ELNIVG  DE DE+ S   V    R+ G       +  P KRPRR
Sbjct:    1 MRIITGDEGGLLKSIDLEGQRIVVAGRQERARGIRALCWSRGGAMYAAARHDGVVTLWEDNPTVPRLARECKGAVNEDVIGMASTDAHLARKEEEERLVVAHENGKIKVLAPWQSVVTGHKGICIDEWQVKGPLTCMACNFGSTNVVAAGGKERELGLYDVSTGAPVWEARNVAHDKLSLRQPVWVTAIHFLDVETGSEGGGAGRLVAIGTGYKQVRIYDVRAPDRRPVRAMELPEGYRITALASGGVQGATGAGSELVSGDAGGTVYRLDVGKMALLGRMEGPAGSVRGLARHPNPALPFVALAGLDRMARVYDLRRPRKEAFRFYLKQRLTAVLFAKQGRKGSKGIAEEIDEEVRAAKATGSNGWREMEDDVLSLDDEEEEEGEGGDYDGEEEEKAEALRRGRYSDTPERKENGFKIQRVYESEEEVDDGGGMGEDTSDGGDQDEEEEEEDEEEDEEGGEEDDEDKVAFGRRNDGPIHLELNIVGGGDEEDEDRSAEQVSNRVREKGIDKHQRQKLGPTKRPRR 526
The following BLAST results are available for this feature:
BLAST of NO11G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25117.15.200e-15259.70wd repeat-containing protein 74 [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01310NO11G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01310.1NO11G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01310.1.cds1NO11G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01310.1.cds2NO11G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01310.1 ID=NO11G01310.1|Name=NO11G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp
GACCAAAGACAAGAGATTGCCTGTAAGATCATAGAATGGGGTGTAGTATG
CAATTGAAAACATGAGCTAAAATTCATGGTCAGCGACAGCGCACATCCTC
GGCACAGGCAAGCATGGCCCACCAGCCACCATCGCTTCTTCTCGATCGTC
GACGAAAACGCGACCTTATCCCGCTTGTACCCACCACTTCCACACTCTCA
CACATCAACAAATGACCAGAGTCCACTAAATCCGTTTGTCTTTTCCGTTT
ACCCCCATTGGTGTATTTTCTCAGCTATGCGAATCATTACGGGCGACGAT
GGCGGCCTCCTCAAGTCCATCGACCTGGAAGCCCAACGCATCGTCGTAGC
CGGTCGCCAGCAGCGGGCACGGGCCATTCGTGCGCTGTGCTGGGCTCGAA
ACGGTACAATATTTGCAGCTGCGCGGCAGGATGGTGTCATAAGCTTGTGG
GAGGATGGTGTACAGATGCCTCACCTACTCAAGATATGCAAAGGCATAAT
AAATGCCGACGTAGTGGGCATGGCTTCGACAGGAGGGGAGACCATTCAGT
CCGAGGCAGAAGAACTCCTCGTCGTCGCTCACGAAGACGGCAAGGTCAAG
CTCCTCGCCCCCTTTCAATCGACAGCAGATCAGGAGAAAGACGTGTTAGT
TGCTGAATGGCAGCTTAAAGCCCCTTTAACATGCATGGCCCTAGGATCTC
CCTCGAGCGGGCTAGTGGCCGTCGGAGGAAAAGAGCGAGAGCTGGGATTG
TACGATTTGAGCACGGGAGAAATAACATGGGAAGCACGCAATGTTCCCCA
TGACAAGCTCAGCCTCCGCCAACCAGTCTGGGTCACCGCCGCACATTTTA
TTGATAGTGATGACGAGGGAAAGGCAGGGAAGATTGTGGCCATCGGCACG
GGGTACAAGCAAGTGAGAATTTATGACATAAGAGAGTCGAATCGAAGGCC
CGTGCGAATGATGGATCTCCCAGAGGGGTATCGAATCACGACATTGTGTA
GCGGGAAGAGCAGCAGCTCTCGTAGTAATGAGTTGGTGAGTGGCGATGCG
GGTGGGAATGTGTATAGATTGGATGTTGGGAAGATGGCCGTGGTGGGGAG
GATGGAGGGACCGGCAGGGTCGATACGAGGGTTGGTGCGACACTCTAGCC
CAAGTTTGCCATTTGTGGCCTTGGCGGGATTGGATAGGATGGCACGTGTG
TATGACTTGCGGAAGCCTCGGAAGGAGGCGTTCAGGTTTTACTTGAAACA
GAGATTGACGGCGGTGTTGTTTTCGAGACAGGGGAGGAGGGGGAAGAAGG
GGAAGGCAGAGGAGGAGGAGGAGGAAGCGCGGGCGGTGTTGCCGGCGGCA
GACGATGAATTGGATGCGATGGAAGATGATGTGGGCAGTTTAGACGAGGA
GGAGGGAGAGGAGGAGGAGGAAGAAATAGGGGAGCGTGGTAGTGATGACG
AAGAGACTGAGGGCGGGAAGAAAGATAGAGTTAGGGTCCAGCGGATCTAT
GAAAATGAGGAGGATGACGAGAAAGAAGAGAAAGACTACGAGGAGGAAGA
GGAGGAAGACGAGAGTGACGATGAGGAGAAGGTGACCTTTGGTCATCGGA
ATGATGGCATGAACGTGGAATTGAATATTGTGGGCGAGCTGGATGAAGGA
GACGAGGAAGACAGTCTTGGTGGTGTTCAAGAAACGAGAAAAGGAGGAAG
GAAGGCCCCAGCCAAGCGTCCACGGCGATAGAAGGGAGAGATAACATTGG
AGAAGAAAAGAAGACTGTTAAATTGCGGGCGCTCGGTAAGTGAGAATGGA
AAAATGTCCCTGATACGAGAGAGAAATAGCCGTGCCATGGAGCAGACGAA
AAAAGATATCTGGGGGAGACAACCGTTTTTAAAGACAAATAAGGGGATCT
GCGGAAGATCACCAGACTGGCTAATGCGTGGTACCACGCGGAAGCAAGAT
CGAGCAAATGTGCGAAGTTTGTTCATTTGAAGATAAAGCATTTTTTTGGC
TATTTGGTCATTGGTCATGCGATGTCATCTTGCGATTAGGCATGGGTAGG
TCGTTACTACGCGATGGTACTTGAAAGATGTGCTTGAGTTTTGAAAAATG
GAAATAGGAGAAAGTGTAAA
back to top

protein sequence of NO11G01310.1

>NO11G01310.1-protein ID=NO11G01310.1-protein|Name=NO11G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MVSDSAHPRHRQAWPTSHHRFFSIVDENATLSRLYPPLPHSHTSTNDQSP
LNPFVFSVYPHWCIFSAMRIITGDDGGLLKSIDLEAQRIVVAGRQQRARA
IRALCWARNGTIFAAARQDGVISLWEDGVQMPHLLKICKGIINADVVGMA
STGGETIQSEAEELLVVAHEDGKVKLLAPFQSTADQEKDVLVAEWQLKAP
LTCMALGSPSSGLVAVGGKERELGLYDLSTGEITWEARNVPHDKLSLRQP
VWVTAAHFIDSDDEGKAGKIVAIGTGYKQVRIYDIRESNRRPVRMMDLPE
GYRITTLCSGKSSSSRSNELVSGDAGGNVYRLDVGKMAVVGRMEGPAGSI
RGLVRHSSPSLPFVALAGLDRMARVYDLRKPRKEAFRFYLKQRLTAVLFS
RQGRRGKKGKAEEEEEEARAVLPAADDELDAMEDDVGSLDEEEGEEEEEE
IGERGSDDEETEGGKKDRVRVQRIYENEEDDEKEEKDYEEEEEEDESDDE
EKVTFGHRNDGMNVELNIVGELDEGDEEDSLGGVQETRKGGRKAPAKRPR
R*
back to top

mRNA from alignment at chr11:455795..458035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01310.1 ID=NO11G01310.1|Name=NO11G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr11:455795..458035- (Nannochloropsis oceanica)
GACCAAAGACAAGAGATTGCCTGTAAGATCATAGAATGGGGTGTAGTATG
CAATTGAAAACATGAGCTAAAATTCATGGTCAGCGACAGCGCACATCCTC
GGCACAGGCAAGCATGGCCCACCAGCCACCATCGCTTCTTCTCGATCGTC
GACGAAAACGCGACCTTATCCCGCTTGTACCCACCACTTCCACACTCTCA
CACATCAACAAATGACCAGAGTCCACTAAATCCGTTTGTCTTTTCCGTTT
ACCCCCATTGGTGTATTTTCTCAGCTATGCGAATCATTACGGGCGACGAT
GGCGGCCTCCTCAAGTCCATCGACCTGGAAGCCCAACGCATCGTCGTAGC
CGGTCGCCAGCAGCGGGCACGGGCCATTCGTGCGCTGTGCTGGGCTCGAA
ACGGTACAATATTTGCAGCTGCGCGGCAGGATGGTGTCATAAGCTTGTGG
GAGGATGGTGTACAGGTATGTGGCATAGTGGTTGCCTGAGGGATTGATAA
TGGAAAAGCAAAAATGGGAAGATACTTTTTATTGTATGTGCCAGACTTCT
TTTCCTCATACACCACCCACTACTTCGCTTTGAAAGATGCCTCACCTACT
CAAGATATGCAAAGGCATAATAAATGCCGACGTAGTGGGCATGGCTTCGA
CAGGAGGGGAGACCATTCAGTCCGAGGCAGAAGAACTCCTCGTCGTCGCT
CACGAAGACGGCAAGGTCAAGCTCCTCGCCCCCTTTCAATCGACAGCAGA
TCAGGAGAAAGACGTGTTAGTTGCTGAATGGCAGCTTAAAGCCCCTTTAA
CATGCATGGCCCTAGGATCTCCCTCGAGCGGGCTAGTGGCCGTCGGAGGA
AAAGAGCGAGAGCTGGGATTGTACGATTTGAGCACGGGAGAAATAACATG
GGAAGCACGCAATGTTCCCCATGACAAGCTCAGCCTCCGCCAACCAGTCT
GGGTCACCGCCGCACATTTTATTGATAGTGATGACGAGGGAAAGGCAGGG
AAGATTGTGGCCATCGGCACGGGGTACAAGCAAGTGAGAATTTATGACAT
AAGAGAGTCGAATCGAAGGCCCGTGCGAATGATGGATCTCCCAGAGGGGT
ATCGAATCACGACATTGTGTAGCGGGAAGAGCAGCAGCTCTCGTAGTAAT
GAGTTGGTGAGTGGCGATGCGGGTGGGAATGTGTATAGATTGGATGTTGG
GAAGATGGCCGTGGTGGGGAGGATGGAGGGACCGGCAGGGTCGATACGAG
GGTTGGTGCGACACTCTAGCCCAAGTTTGCCATTTGTGGCCTTGGCGGGA
TTGGATAGGATGGCACGTGTGTATGACTTGCGGAAGCCTCGGAAGGAGGC
GTTCAGGTTTTACTTGAAACAGAGATTGACGGCGGTGTTGTTTTCGAGAC
AGGGGAGGAGGGGGAAGAAGGGGAAGGCAGAGGAGGAGGAGGAGGAAGCG
CGGGCGGTGTTGCCGGCGGCAGACGATGAATTGGATGCGATGGAAGATGA
TGTGGGCAGTTTAGACGAGGAGGAGGGAGAGGAGGAGGAGGAAGAAATAG
GGGAGCGTGGTAGTGATGACGAAGAGACTGAGGGCGGGAAGAAAGATAGA
GTTAGGGTCCAGCGGATCTATGAAAATGAGGAGGATGACGAGAAAGAAGA
GAAAGACTACGAGGAGGAAGAGGAGGAAGACGAGAGTGACGATGAGGAGA
AGGTGACCTTTGGTCATCGGAATGATGGCATGAACGTGGAATTGAATATT
GTGGGCGAGCTGGATGAAGGAGACGAGGAAGACAGTCTTGGTGGTGTTCA
AGAAACGAGAAAAGGAGGAAGGAAGGCCCCAGCCAAGCGTCCACGGCGAT
AGAAGGGAGAGATAACATTGGAGAAGAAAAGAAGACTGTTAAATTGCGGG
CGCTCGGTAAGTGAGAATGGAAAAATGTCCCTGATACGAGAGAGAAATAG
CCGTGCCATGGAGCAGACGAAAAAAGATATCTGGGGGAGACAACCGTTTT
TAAAGACAAATAAGGGGATCTGCGGAAGATCACCAGACTGGCTAATGCGT
GGTACCACGCGGAAGCAAGATCGAGCAAATGTGCGAAGTTTGTTCATTTG
AAGATAAAGCATTTTTTTGGCTATTTGGTCATTGGTCATGCGATGTCATC
TTGCGATTAGGCATGGGTAGGTCGTTACTACGCGATGGTACTTGAAAGAT
GTGCTTGAGTTTTGAAAAATGGAAATAGGAGAAAGTGTAAA
back to top

Coding sequence (CDS) from alignment at chr11:455795..458035-

>NO11G01310.1 ID=NO11G01310.1|Name=NO11G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr11:455795..458035- (Nannochloropsis oceanica)
ATGGTCAGCGACAGCGCACATCCTCGGCACAGGCAAGCATGGCCCACCAG
CCACCATCGCTTCTTCTCGATCGTCGACGAAAACGCGACCTTATCCCGCT
TGTACCCACCACTTCCACACTCTCACACATCAACAAATGACCAGAGTCCA
CTAAATCCGTTTGTCTTTTCCGTTTACCCCCATTGGTGTATTTTCTCAGC
TATGCGAATCATTACGGGCGACGATGGCGGCCTCCTCAAGTCCATCGACC
TGGAAGCCCAACGCATCGTCGTAGCCGGTCGCCAGCAGCGGGCACGGGCC
ATTCGTGCGCTGTGCTGGGCTCGAAACGGTACAATATTTGCAGCTGCGCG
GCAGGATGGTGTCATAAGCTTGTGGGAGGATGGTGTACAGATGCCTCACC
TACTCAAGATATGCAAAGGCATAATAAATGCCGACGTAGTGGGCATGGCT
TCGACAGGAGGGGAGACCATTCAGTCCGAGGCAGAAGAACTCCTCGTCGT
CGCTCACGAAGACGGCAAGGTCAAGCTCCTCGCCCCCTTTCAATCGACAG
CAGATCAGGAGAAAGACGTGTTAGTTGCTGAATGGCAGCTTAAAGCCCCT
TTAACATGCATGGCCCTAGGATCTCCCTCGAGCGGGCTAGTGGCCGTCGG
AGGAAAAGAGCGAGAGCTGGGATTGTACGATTTGAGCACGGGAGAAATAA
CATGGGAAGCACGCAATGTTCCCCATGACAAGCTCAGCCTCCGCCAACCA
GTCTGGGTCACCGCCGCACATTTTATTGATAGTGATGACGAGGGAAAGGC
AGGGAAGATTGTGGCCATCGGCACGGGGTACAAGCAAGTGAGAATTTATG
ACATAAGAGAGTCGAATCGAAGGCCCGTGCGAATGATGGATCTCCCAGAG
GGGTATCGAATCACGACATTGTGTAGCGGGAAGAGCAGCAGCTCTCGTAG
TAATGAGTTGGTGAGTGGCGATGCGGGTGGGAATGTGTATAGATTGGATG
TTGGGAAGATGGCCGTGGTGGGGAGGATGGAGGGACCGGCAGGGTCGATA
CGAGGGTTGGTGCGACACTCTAGCCCAAGTTTGCCATTTGTGGCCTTGGC
GGGATTGGATAGGATGGCACGTGTGTATGACTTGCGGAAGCCTCGGAAGG
AGGCGTTCAGGTTTTACTTGAAACAGAGATTGACGGCGGTGTTGTTTTCG
AGACAGGGGAGGAGGGGGAAGAAGGGGAAGGCAGAGGAGGAGGAGGAGGA
AGCGCGGGCGGTGTTGCCGGCGGCAGACGATGAATTGGATGCGATGGAAG
ATGATGTGGGCAGTTTAGACGAGGAGGAGGGAGAGGAGGAGGAGGAAGAA
ATAGGGGAGCGTGGTAGTGATGACGAAGAGACTGAGGGCGGGAAGAAAGA
TAGAGTTAGGGTCCAGCGGATCTATGAAAATGAGGAGGATGACGAGAAAG
AAGAGAAAGACTACGAGGAGGAAGAGGAGGAAGACGAGAGTGACGATGAG
GAGAAGGTGACCTTTGGTCATCGGAATGATGGCATGAACGTGGAATTGAA
TATTGTGGGCGAGCTGGATGAAGGAGACGAGGAAGACAGTCTTGGTGGTG
TTCAAGAAACGAGAAAAGGAGGAAGGAAGGCCCCAGCCAAGCGTCCACGG
CGATAG
back to top
Synonyms
Publications