NO11G01250.1, NO11G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01250.1
Unique NameNO11G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length951
Alignment locationchr11:438294..439570 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:438294..439570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01250.1 vs.
Match: CBJ26257.1 (thiamine-phosphate pyrophosphorylase [Ectocarpus siliculosus])

HSP 1 Score: 97.1 bits (240), Expect = 1.000e-16
Identity = 77/225 (34.22%), Postives = 107/225 (47.56%), Query Frame = 0 
Query:   51 PYLVYVTP--AIPAGAEEQKAWFEKVQQCAQAGVPLVQIRDKVLSAEALAPHVTRCREQLDAAAAHYWQPQQQHTHPKTLLIINGHPEMH--IGLDGVHFPEDSLERVSMVLFREQKRQEEKEEEEEEKQRQQLAFVTGVSVHSVEAAVKAAQMGVDYLQVGTMYLTGSHPEKLEVEGTALMTAIDTALREAQLRDRVLICGIGGITPANCEAVLRAGADGVAVI 272
            P L  +TP     +   E  +    +Q+    GV LVQ+RD    A++ A    R    ++  A               L ++NG P+     G DGVH PE  ++R  +V  R Q                    + G SVHSV AAV+AA++G DY+QVGTM+ T SHP K   EG  ++  +   L+   L D VL+ G+GGI  +NC  V+ AG DGVA I
Sbjct:   49 PVLELITPDGCASSSFSETSSLVINIQKAVAGGVSLVQLRDYKSGAKSKADLAVRISTAIEGRA---------------LFVVNGEPDAARASGADGVHLPERMMDR--LVGLRGQGEWPR---------------IVGCSVHSVAAAVEAARLGADYVQVGTMFATQSHPGKTP-EGVGMLNDVRRQLQVEGL-DVVLVLGVGGIDASNCGDVVAAGGDGVAAI 239
The following BLAST results are available for this feature:
BLAST of NO11G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26257.11.000e-1634.22thiamine-phosphate pyrophosphorylase [Ectocarpus s... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01250NO11G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01250.1NO11G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01250.1.cds1NO11G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01250.1.cds2NO11G01250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01250.1.cds3NO11G01250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01250.1.cds4NO11G01250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01250.1.cds5NO11G01250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01250.1 ID=NO11G01250.1|Name=NO11G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
ATGGGAAGAAATAGGGTGCCACCGATACCTTTACTGATCACCGCGGTGCC
ACTGACGAGTCTAACCCTTATCGTCTGGATTATTAGTGTCGTCGCTTTAA
GACAGCAGTTACCCCCCTCAACCACTCCTCCAAAGCTGTCTGTCCCCACG
CCCTACCTCGTCTACGTAACTCCGGCCATTCCTGCAGGGGCGGAGGAGCA
GAAGGCTTGGTTCGAGAAGGTTCAGCAATGCGCCCAGGCCGGAGTGCCAT
TAGTGCAAATCCGCGACAAGGTTTTGTCTGCAGAGGCCCTGGCACCCCAT
GTGACGCGATGCCGGGAGCAACTTGATGCTGCCGCAGCCCACTACTGGCA
GCCGCAACAGCAGCATACGCACCCCAAAACCCTTCTTATTATCAATGGTC
ATCCTGAAATGCATATAGGGTTGGATGGAGTCCATTTCCCTGAGGACAGT
CTGGAGCGCGTATCCATGGTGCTTTTTAGAGAGCAAAAGCGGCAGGAGGA
GAAGGAGGAGGAGGAAGAAGAAAAGCAGCGGCAGCAGCTAGCCTTTGTGA
CGGGCGTGTCGGTGCATAGCGTGGAAGCAGCTGTCAAGGCCGCACAGATG
GGGGTCGACTACTTGCAGGTGGGCACCATGTACCTGACGGGGAGCCACCC
CGAAAAGCTGGAGGTGGAAGGCACGGCCTTAATGACGGCCATAGACACGG
CGCTCCGCGAAGCCCAGCTTCGGGACCGCGTTCTTATCTGTGGTATTGGG
GGCATCACCCCCGCCAATTGTGAGGCTGTGCTACGGGCAGGTGCAGATGG
AGTGGCGGTCATCAGTGGCATTGCAGCGGTGGACAATGATGTGCCCCGTA
CCGTGGCTGCGTTTCGCGAGGTGTTTGCGAGGCTAGATACGGCATCAAAA
AACAGAGGAGATGCATGTCTATAGGGTCAGAGAATGTATTAAACGAAATT
C
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protein sequence of NO11G01250.1

>NO11G01250.1-protein ID=NO11G01250.1-protein|Name=NO11G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MGRNRVPPIPLLITAVPLTSLTLIVWIISVVALRQQLPPSTTPPKLSVPT
PYLVYVTPAIPAGAEEQKAWFEKVQQCAQAGVPLVQIRDKVLSAEALAPH
VTRCREQLDAAAAHYWQPQQQHTHPKTLLIINGHPEMHIGLDGVHFPEDS
LERVSMVLFREQKRQEEKEEEEEEKQRQQLAFVTGVSVHSVEAAVKAAQM
GVDYLQVGTMYLTGSHPEKLEVEGTALMTAIDTALREAQLRDRVLICGIG
GITPANCEAVLRAGADGVAVISGIAAVDNDVPRTVAAFREVFARLDTASK
NRGDACL*
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mRNA from alignment at chr11:438294..439570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01250.1 ID=NO11G01250.1|Name=NO11G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp|location=Sequence derived from alignment at chr11:438294..439570+ (Nannochloropsis oceanica)
ATGGGAAGAAATAGGGTGCCACCGATACCTTTACTGATCACCGCGGTGCC
ACTGACGAGTCTAACCCTTATCGTCTGGATTATTAGTGTCGTCGCTTTAA
GACAGCAGTTACCCCCCTCAACCACTCCTCCAAAGCTGTCTGTCCCCACG
CCCTACCTCGTCTACGTAACTCCGGCCATTCCTGCAGGGGCGGAGGAGCA
GAAGGCTTGGTTCGAGAAGGTAATTTTAGCGAAATGTGGGCTAACAAGCC
TTGAATCTTCCTCACTCTTCCCCCTCGACAACTCCACATAAGGTTCAGCA
ATGCGCCCAGGCCGGAGTGCCATTAGTGCAAATCCGCGACAAGGTTTTGT
CTGCAGAGGTAAGAAATGGAATTCAAGGTGAATTTGCCTCTGACATCTGC
ACATACTCTGTTCATTACCTCCTTTCTCTCCACCCATTCCACTCAAGGCC
CTGGCACCCCATGTGACGCGATGCCGGGAGCAACTTGATGCTGCCGCAGC
CCACTACTGGCAGCCGCAACAGCAGCATACGCACCCCAAAACCCTTCTTA
TTATCAATGGTCATCCTGAAATGCATATAGGGTTGGATGGAGTCCATTTC
CCTGAGGACAGTCTGGAGCGCGTATCCATGGTGCTTTTTAGAGAGCAAAA
GCGGCAGGAGGAGAAGGAGGAGGAGGAAGAAGAAAAGCAGCGGCAGCAGC
TAGCCTTTGTGACGGGCGTGTCGGTGCATAGCGTGGTGTGTATCCGAGAA
GCGGTGGCATACGTTTACGTTCTCTATACCTGACGATGTCGTTTCATGCA
TACATATAGGAAGCAGCTGTCAAGGCCGCACAGATGGGGGTCGACTACTT
GCAGGTTCGCTGCGAAAGAAGGGAAAATTAGACCGTCCCCGCCGCCGATA
AGATGTCTTACTTTATCTCCAACTACATGCATACATGCATTCAGGTGGGC
ACCATGTACCTGACGGGGAGCCACCCCGAAAAGCTGGAGGTGGAAGGCAC
GGCCTTAATGACGGCCATAGACACGGCGCTCCGCGAAGCCCAGCTTCGGG
ACCGCGTTCTTATCTGTGGTATTGGGGGCATCACCCCCGCCAATTGTGAG
GCTGTGCTACGGGCAGGTGCAGATGGAGTGGCGGTCATCAGTGGCATTGC
AGCGGTGGACAATGATGTGCCCCGTACCGTGGCTGCGTTTCGCGAGGTGT
TTGCGAGGCTAGATACGGCATCAAAAAACAGAGGAGATGCATGTCTATAG
GGTCAGAGAATGTATTAAACGAAATTC
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Coding sequence (CDS) from alignment at chr11:438294..439570+

>NO11G01250.1 ID=NO11G01250.1|Name=NO11G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr11:438294..439570+ (Nannochloropsis oceanica)
ATGGGAAGAAATAGGGTGCCACCGATACCTTTACTGATCACCGCGGTGCC
ACTGACGAGTCTAACCCTTATCGTCTGGATTATTAGTGTCGTCGCTTTAA
GACAGCAGTTACCCCCCTCAACCACTCCTCCAAAGCTGTCTGTCCCCACG
CCCTACCTCGTCTACGTAACTCCGGCCATTCCTGCAGGGGCGGAGGAGCA
GAAGGCTTGGTTCGAGAAGGTTCAGCAATGCGCCCAGGCCGGAGTGCCAT
TAGTGCAAATCCGCGACAAGGTTTTGTCTGCAGAGGCCCTGGCACCCCAT
GTGACGCGATGCCGGGAGCAACTTGATGCTGCCGCAGCCCACTACTGGCA
GCCGCAACAGCAGCATACGCACCCCAAAACCCTTCTTATTATCAATGGTC
ATCCTGAAATGCATATAGGGTTGGATGGAGTCCATTTCCCTGAGGACAGT
CTGGAGCGCGTATCCATGGTGCTTTTTAGAGAGCAAAAGCGGCAGGAGGA
GAAGGAGGAGGAGGAAGAAGAAAAGCAGCGGCAGCAGCTAGCCTTTGTGA
CGGGCGTGTCGGTGCATAGCGTGGAAGCAGCTGTCAAGGCCGCACAGATG
GGGGTCGACTACTTGCAGGTGGGCACCATGTACCTGACGGGGAGCCACCC
CGAAAAGCTGGAGGTGGAAGGCACGGCCTTAATGACGGCCATAGACACGG
CGCTCCGCGAAGCCCAGCTTCGGGACCGCGTTCTTATCTGTGGTATTGGG
GGCATCACCCCCGCCAATTGTGAGGCTGTGCTACGGGCAGGTGCAGATGG
AGTGGCGGTCATCAGTGGCATTGCAGCGGTGGACAATGATGTGCCCCGTA
CCGTGGCTGCGTTTCGCGAGGTGTTTGCGAGGCTAGATACGGCATCAAAA
AACAGAGGAGATGCATGTCTATAG
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Synonyms
Publications