NO11G01240.1, NO11G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01240.1
Unique NameNO11G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1551
Alignment locationchr11:436571..438121 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:436571..438121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01240.1 vs.
Match: EWM25143.1 (Sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 528.9 bits (1361), Expect = 1.800e-146
Identity = 302/506 (59.68%), Postives = 360/506 (71.15%), Query Frame = 0 
Query:    8 LHDCRLDLLALVVDFLDVRDQRSFALAHSYHLLVLHTVQHCGVASTTITMTTPTVSPPLSSTSTSSASSGNKAAGKGPFSFGLGELDRPRFLYPEERGGETVALVSYPRSGNSMLRSLLESVTGVVTGSDTRPDRVLSRSLLKKGLRGEGVVDERAWVVKTHWPERYGYRRFPTQRVILLIRNPFDAIHSYFNMGLTNTHEGRLADDLYPSLHELWEDMARNEAKIWAKFNTFWLTRGLPVLVLRYEDLLLHTEEMLVRLVSFLEKTPREAVRASALYMARIRKSAAIVKRPSASSPPESLSTLAARDADAKPSAAGSCDSGDSSSSSSSKSRSISSTPSSYPCSDSTTDNKSPSISGIYANSFYAGNTRFGASLRYFSSALVEEIIKRGGGSLRSFGYDPLSQGFPHQVLSLAPYERCVKFVDSSLFSFSTSTDGGFTPAPPAGAASGATAAAWEGKGKEREEERVTVNKGKQFEVRGKGDRFGREITAVRHDLTDHDRCPLPTV 514
            LHDC LDLLA +V FL+ +D++ FA+AHSYH LVLHT+ HCG  ST++++ TP V  P +++  S     N   G+   S GL  L RPRFL+P ERGGETVAL+SYPRSGNSMLR+LLE  TG+VTGSDTRPDRVLSRSLLK+GLRGEGVVDERAW+VK+HWPER+GYRRFP QR+ILL+RNPFDAI+SYFNMGLTNTHE RLA D++ SL  LWEDMARNEA++WAKFN +WLT+ LPVLV+RYEDLLLHTEEMLVRLVSFLE TPREA+RAS  +MARI KSAA ++ P    PP S S L       +       D G   SS +S      + P   P   S +  +S +           GN   G SLR+FS ALVE++ +  GG LR+FGYDP+SQGFPH+VLSL  YERCVKFVD SL S     +     APPA AA+ A +A      +ER   RVT+N G Q  VR + DRFGR IT+VRH+LTDHDR PL TV
Sbjct:    7 LHDCNLDLLATMVGFLNEQDRKCFAIAHSYHFLVLHTIVHCGTVSTSLSVNTPAVCVPCNASILSDDHGFN---GEKAPSAGLEGLSRPRFLFPGERGGETVALLSYPRSGNSMLRTLLEEATGIVTGSDTRPDRVLSRSLLKRGLRGEGVVDERAWIVKSHWPERHGYRRFPAQRIILLVRNPFDAIYSYFNMGLTNTHEERLASDVFESLAPLWEDMARNEARVWAKFNAYWLTQKLPVLVVRYEDLLLHTEEMLVRLVSFLESTPREAIRASRSHMARIAKSAAAIRSPPII-PPISFSELVLDGPRGE-------DQGAIDSSVTSPVTPAGTHPEVPPPPSSRSPPRSHACPD-------KGN--IGKSLRFFSPALVEDVARLAGGGLRAFGYDPVSQGFPHRVLSLPLYERCVKFVDPSLLSHLPDRN----IAPPAAAATAAGSALPAYSMRER---RVTLNTGTQRGVRDRADRFGRGITSVRHELTDHDRRPLRTV 485
The following BLAST results are available for this feature:
BLAST of NO11G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25143.11.800e-14659.68Sulfotransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01240NO11G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01240.1NO11G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01240.1.cds1NO11G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01240.1 ID=NO11G01240.1|Name=NO11G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
ATGAAACCGCCTATCTTTCAGCTCCACGACTGTAGGCTTGACTTGCTGGC
GCTGGTGGTGGACTTCCTCGATGTGCGTGATCAACGCAGCTTTGCGTTGG
CGCACTCCTACCATCTCCTGGTCCTGCACACCGTTCAGCATTGCGGAGTG
GCCTCCACGACCATTACTATGACCACACCGACCGTCTCTCCACCACTAAG
TAGCACCAGCACCAGCAGTGCCAGCAGCGGCAATAAGGCCGCTGGCAAAG
GCCCCTTTTCCTTTGGACTGGGTGAGTTGGACCGACCGCGTTTCTTGTAC
CCCGAGGAGCGGGGTGGGGAGACGGTGGCGTTGGTGAGCTACCCACGTTC
AGGCAACTCCATGTTGCGGAGCCTCCTAGAGAGTGTCACGGGCGTGGTCA
CGGGCAGTGATACCCGGCCGGACCGTGTGCTGAGTCGGAGCTTGCTCAAG
AAGGGCTTACGAGGGGAGGGGGTCGTGGACGAGCGGGCGTGGGTGGTCAA
GACACATTGGCCCGAGCGCTACGGCTACCGACGCTTTCCCACGCAACGGG
TTATTCTACTCATCCGCAATCCGTTTGATGCAATCCACTCGTACTTTAAT
ATGGGTTTGACAAACACGCACGAGGGGAGACTGGCAGACGATCTTTATCC
ATCGCTCCACGAGCTGTGGGAGGACATGGCCCGGAATGAGGCCAAGATCT
GGGCTAAATTCAACACGTTTTGGCTCACACGTGGCTTACCCGTCTTGGTG
CTAAGGTACGAGGACTTGCTGTTGCACACCGAGGAGATGCTAGTTCGTCT
GGTAAGCTTTTTGGAGAAGACTCCACGGGAGGCTGTGCGGGCGTCAGCAC
TTTACATGGCGCGGATCCGCAAGAGCGCGGCCATTGTTAAGAGACCGTCG
GCATCGTCGCCCCCGGAATCGTTGTCCACTCTCGCTGCCAGAGATGCGGA
TGCTAAGCCGTCGGCCGCTGGCAGCTGCGACAGCGGTGACAGCAGTAGCA
GCAGTAGCAGCAAGAGCAGGAGCATCTCCTCGACTCCTTCATCTTACCCT
TGCTCCGACAGCACCACTGACAACAAATCTCCGAGCATCAGTGGTATTTA
TGCAAACAGTTTCTATGCCGGAAACACAAGATTTGGGGCCAGCTTACGCT
ATTTCTCTTCGGCACTTGTGGAAGAAATAATTAAACGAGGAGGGGGCAGC
CTACGTTCCTTCGGGTATGACCCTCTCTCCCAGGGATTTCCACACCAAGT
CCTCTCGTTAGCACCTTACGAACGGTGCGTTAAATTCGTGGATTCCAGTC
TGTTTTCCTTTTCCACGTCAACAGACGGAGGCTTTACACCTGCTCCACCG
GCAGGCGCTGCTTCTGGTGCCACGGCTGCAGCTTGGGAAGGAAAGGGTAA
GGAACGGGAAGAGGAGCGGGTGACTGTGAATAAGGGGAAGCAATTCGAGG
TGAGGGGAAAAGGGGATCGTTTTGGGCGGGAAATAACGGCAGTGCGGCAT
GACCTGACAGACCACGACCGTTGCCCGTTGCCCACGGTAGGAAAAGAATA
G
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protein sequence of NO11G01240.1

>NO11G01240.1-protein ID=NO11G01240.1-protein|Name=NO11G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MKPPIFQLHDCRLDLLALVVDFLDVRDQRSFALAHSYHLLVLHTVQHCGV
ASTTITMTTPTVSPPLSSTSTSSASSGNKAAGKGPFSFGLGELDRPRFLY
PEERGGETVALVSYPRSGNSMLRSLLESVTGVVTGSDTRPDRVLSRSLLK
KGLRGEGVVDERAWVVKTHWPERYGYRRFPTQRVILLIRNPFDAIHSYFN
MGLTNTHEGRLADDLYPSLHELWEDMARNEAKIWAKFNTFWLTRGLPVLV
LRYEDLLLHTEEMLVRLVSFLEKTPREAVRASALYMARIRKSAAIVKRPS
ASSPPESLSTLAARDADAKPSAAGSCDSGDSSSSSSSKSRSISSTPSSYP
CSDSTTDNKSPSISGIYANSFYAGNTRFGASLRYFSSALVEEIIKRGGGS
LRSFGYDPLSQGFPHQVLSLAPYERCVKFVDSSLFSFSTSTDGGFTPAPP
AGAASGATAAAWEGKGKEREEERVTVNKGKQFEVRGKGDRFGREITAVRH
DLTDHDRCPLPTVGKE*
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mRNA from alignment at chr11:436571..438121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01240.1 ID=NO11G01240.1|Name=NO11G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp|location=Sequence derived from alignment at chr11:436571..438121- (Nannochloropsis oceanica)
ATGAAACCGCCTATCTTTCAGCTCCACGACTGTAGGCTTGACTTGCTGGC
GCTGGTGGTGGACTTCCTCGATGTGCGTGATCAACGCAGCTTTGCGTTGG
CGCACTCCTACCATCTCCTGGTCCTGCACACCGTTCAGCATTGCGGAGTG
GCCTCCACGACCATTACTATGACCACACCGACCGTCTCTCCACCACTAAG
TAGCACCAGCACCAGCAGTGCCAGCAGCGGCAATAAGGCCGCTGGCAAAG
GCCCCTTTTCCTTTGGACTGGGTGAGTTGGACCGACCGCGTTTCTTGTAC
CCCGAGGAGCGGGGTGGGGAGACGGTGGCGTTGGTGAGCTACCCACGTTC
AGGCAACTCCATGTTGCGGAGCCTCCTAGAGAGTGTCACGGGCGTGGTCA
CGGGCAGTGATACCCGGCCGGACCGTGTGCTGAGTCGGAGCTTGCTCAAG
AAGGGCTTACGAGGGGAGGGGGTCGTGGACGAGCGGGCGTGGGTGGTCAA
GACACATTGGCCCGAGCGCTACGGCTACCGACGCTTTCCCACGCAACGGG
TTATTCTACTCATCCGCAATCCGTTTGATGCAATCCACTCGTACTTTAAT
ATGGGTTTGACAAACACGCACGAGGGGAGACTGGCAGACGATCTTTATCC
ATCGCTCCACGAGCTGTGGGAGGACATGGCCCGGAATGAGGCCAAGATCT
GGGCTAAATTCAACACGTTTTGGCTCACACGTGGCTTACCCGTCTTGGTG
CTAAGGTACGAGGACTTGCTGTTGCACACCGAGGAGATGCTAGTTCGTCT
GGTAAGCTTTTTGGAGAAGACTCCACGGGAGGCTGTGCGGGCGTCAGCAC
TTTACATGGCGCGGATCCGCAAGAGCGCGGCCATTGTTAAGAGACCGTCG
GCATCGTCGCCCCCGGAATCGTTGTCCACTCTCGCTGCCAGAGATGCGGA
TGCTAAGCCGTCGGCCGCTGGCAGCTGCGACAGCGGTGACAGCAGTAGCA
GCAGTAGCAGCAAGAGCAGGAGCATCTCCTCGACTCCTTCATCTTACCCT
TGCTCCGACAGCACCACTGACAACAAATCTCCGAGCATCAGTGGTATTTA
TGCAAACAGTTTCTATGCCGGAAACACAAGATTTGGGGCCAGCTTACGCT
ATTTCTCTTCGGCACTTGTGGAAGAAATAATTAAACGAGGAGGGGGCAGC
CTACGTTCCTTCGGGTATGACCCTCTCTCCCAGGGATTTCCACACCAAGT
CCTCTCGTTAGCACCTTACGAACGGTGCGTTAAATTCGTGGATTCCAGTC
TGTTTTCCTTTTCCACGTCAACAGACGGAGGCTTTACACCTGCTCCACCG
GCAGGCGCTGCTTCTGGTGCCACGGCTGCAGCTTGGGAAGGAAAGGGTAA
GGAACGGGAAGAGGAGCGGGTGACTGTGAATAAGGGGAAGCAATTCGAGG
TGAGGGGAAAAGGGGATCGTTTTGGGCGGGAAATAACGGCAGTGCGGCAT
GACCTGACAGACCACGACCGTTGCCCGTTGCCCACGGTAGGAAAAGAATA
G
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Coding sequence (CDS) from alignment at chr11:436571..438121-

>NO11G01240.1 ID=NO11G01240.1|Name=NO11G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr11:436571..438121- (Nannochloropsis oceanica)
ATGAAACCGCCTATCTTTCAGCTCCACGACTGTAGGCTTGACTTGCTGGC
GCTGGTGGTGGACTTCCTCGATGTGCGTGATCAACGCAGCTTTGCGTTGG
CGCACTCCTACCATCTCCTGGTCCTGCACACCGTTCAGCATTGCGGAGTG
GCCTCCACGACCATTACTATGACCACACCGACCGTCTCTCCACCACTAAG
TAGCACCAGCACCAGCAGTGCCAGCAGCGGCAATAAGGCCGCTGGCAAAG
GCCCCTTTTCCTTTGGACTGGGTGAGTTGGACCGACCGCGTTTCTTGTAC
CCCGAGGAGCGGGGTGGGGAGACGGTGGCGTTGGTGAGCTACCCACGTTC
AGGCAACTCCATGTTGCGGAGCCTCCTAGAGAGTGTCACGGGCGTGGTCA
CGGGCAGTGATACCCGGCCGGACCGTGTGCTGAGTCGGAGCTTGCTCAAG
AAGGGCTTACGAGGGGAGGGGGTCGTGGACGAGCGGGCGTGGGTGGTCAA
GACACATTGGCCCGAGCGCTACGGCTACCGACGCTTTCCCACGCAACGGG
TTATTCTACTCATCCGCAATCCGTTTGATGCAATCCACTCGTACTTTAAT
ATGGGTTTGACAAACACGCACGAGGGGAGACTGGCAGACGATCTTTATCC
ATCGCTCCACGAGCTGTGGGAGGACATGGCCCGGAATGAGGCCAAGATCT
GGGCTAAATTCAACACGTTTTGGCTCACACGTGGCTTACCCGTCTTGGTG
CTAAGGTACGAGGACTTGCTGTTGCACACCGAGGAGATGCTAGTTCGTCT
GGTAAGCTTTTTGGAGAAGACTCCACGGGAGGCTGTGCGGGCGTCAGCAC
TTTACATGGCGCGGATCCGCAAGAGCGCGGCCATTGTTAAGAGACCGTCG
GCATCGTCGCCCCCGGAATCGTTGTCCACTCTCGCTGCCAGAGATGCGGA
TGCTAAGCCGTCGGCCGCTGGCAGCTGCGACAGCGGTGACAGCAGTAGCA
GCAGTAGCAGCAAGAGCAGGAGCATCTCCTCGACTCCTTCATCTTACCCT
TGCTCCGACAGCACCACTGACAACAAATCTCCGAGCATCAGTGGTATTTA
TGCAAACAGTTTCTATGCCGGAAACACAAGATTTGGGGCCAGCTTACGCT
ATTTCTCTTCGGCACTTGTGGAAGAAATAATTAAACGAGGAGGGGGCAGC
CTACGTTCCTTCGGGTATGACCCTCTCTCCCAGGGATTTCCACACCAAGT
CCTCTCGTTAGCACCTTACGAACGGTGCGTTAAATTCGTGGATTCCAGTC
TGTTTTCCTTTTCCACGTCAACAGACGGAGGCTTTACACCTGCTCCACCG
GCAGGCGCTGCTTCTGGTGCCACGGCTGCAGCTTGGGAAGGAAAGGGTAA
GGAACGGGAAGAGGAGCGGGTGACTGTGAATAAGGGGAAGCAATTCGAGG
TGAGGGGAAAAGGGGATCGTTTTGGGCGGGAAATAACGGCAGTGCGGCAT
GACCTGACAGACCACGACCGTTGCCCGTTGCCCACGGTAGGAAAAGAATA
G
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Synonyms
Publications