NO11G01230.1, NO11G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01230.1
Unique NameNO11G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length990
Alignment locationchr11:432236..433225 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:432236..433225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01230.1 vs.
Match: EWM25135.1 (trans-2-enoyl- reductase [Nannochloropsis gaditana])

HSP 1 Score: 433.7 bits (1114), Expect = 5.000e-118
Identity = 240/329 (72.95%), Postives = 275/329 (83.59%), Query Frame = 0 
Query:    1 MASFRVVVASLLARRGVPSCQRSTAATAAAAYRGLSTSAAALGDNEVALSILAAPVTAADMDSKSPAGAEGVGIVTAVGSKVKDLAVHDWVVPTSGSVPTFRSAAKAKEVDLAKVPSDIPVEFAACMGTALTALRLLSGVKGGEYVLQADADSPVGLAVVQIAQARGVGTINIVTDGPGFFDKAGLIKDLGGDVVVKDTYATGNAGFAKILSELPKPSLALAATEAGSAVVGKVGMGLKANLYATAGESSLKKATASEIESAASMFRSGALQLWVERHPLSDLPVALKEASEPFKTRKVVVMINEPPRPKVDEAKLSADFEKAFQKLKA 330
            MAS R+V+ASLL R+G P+  R   AT AAA RGLST+A AL DNEVALSILAAPVTA D+  K+P G EGVG+VTAVGSKV+  AVHDW VPTSGSVPTF SAAKAKE +LAKVPSDIPVEFAACMGTALTALRLL+G+K G++VLQADADSPVGLAVVQIAQARGVGTINIV DGPGF+DK  LIKDLGGDVVV DTYA  + GF+ I+ ELPKP+LALAATEAG A+  K G G K   + T G S L KA+A+EIE+AA +FRS ALQLWVERHP SDL VALKEA+EPFKTR+VV++++E P+P+VDEAKL  DFEK FQ+L+A
Sbjct:   24 MASSRLVMASLLGRKG-PARLRPPGATVAAACRGLSTAAGALADNEVALSILAAPVTAMDVGKKNPTGVEGVGVVTAVGSKVRGFAVHDWAVPTSGSVPTFCSAAKAKENELAKVPSDIPVEFAACMGTALTALRLLAGLKKGDFVLQADADSPVGLAVVQIAQARGVGTINIVVDGPGFWDKISLIKDLGGDVVVSDTYAREDPGFSSIMGELPKPTLALAATEAGVALASKCGGGAKVVNHNTGG-SGLLKASAAEIEAAAGLFRSEALQLWVERHPYSDLSVALKEAAEPFKTRRVVLVMSEVPKPQVDEAKLREDFEKLFQRLRA 350
The following BLAST results are available for this feature:
BLAST of NO11G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25135.15.000e-11872.95trans-2-enoyl- reductase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01230NO11G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01230.1NO11G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01230.1.cds1NO11G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01230.1 ID=NO11G01230.1|Name=NO11G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=990bp
ATGGCGTCGTTCCGCGTGGTAGTGGCCTCGCTGTTGGCACGAAGGGGTGT
GCCTTCTTGCCAGAGATCAACCGCTGCCACGGCCGCCGCTGCTTATCGAG
GCCTGTCGACATCCGCTGCGGCGTTGGGGGACAACGAGGTAGCGCTTAGC
ATCCTCGCCGCGCCCGTCACGGCGGCAGACATGGACAGCAAGAGTCCGGC
AGGTGCGGAGGGTGTGGGGATCGTGACGGCGGTGGGGAGCAAGGTCAAAG
ACTTGGCAGTCCATGATTGGGTGGTGCCGACATCGGGCTCGGTACCAACG
TTCCGCAGTGCTGCCAAAGCCAAGGAAGTTGACCTGGCCAAGGTCCCCTC
AGACATTCCTGTAGAATTTGCTGCCTGTATGGGCACGGCGTTGACGGCCT
TGCGGTTGCTGTCGGGTGTCAAGGGTGGGGAGTATGTGTTGCAGGCGGAC
GCGGACTCGCCGGTGGGGTTGGCCGTCGTTCAGATAGCCCAGGCTCGAGG
TGTGGGCACGATTAACATTGTTACGGATGGCCCAGGGTTTTTTGATAAGG
CGGGTTTGATCAAGGATTTGGGTGGGGATGTGGTGGTCAAGGATACCTAT
GCCACAGGTAATGCCGGGTTCGCAAAAATCCTGTCGGAGCTGCCGAAGCC
TAGTCTAGCGCTGGCGGCCACTGAGGCAGGCTCAGCGGTGGTGGGTAAGG
TCGGGATGGGACTGAAGGCCAACTTGTACGCAACAGCGGGGGAGAGCAGT
TTAAAAAAGGCGACGGCGTCGGAAATTGAGTCGGCCGCAAGCATGTTCAG
GTCGGGGGCTTTGCAACTGTGGGTGGAACGACACCCGTTGTCGGACTTGC
CAGTGGCATTAAAGGAGGCCTCTGAACCGTTTAAGACACGCAAGGTGGTA
GTGATGATAAATGAGCCACCCAGGCCGAAGGTTGACGAGGCGAAGCTGTC
CGCGGACTTTGAGAAGGCCTTTCAGAAGCTCAAGGCATAG
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protein sequence of NO11G01230.1

>NO11G01230.1-protein ID=NO11G01230.1-protein|Name=NO11G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MASFRVVVASLLARRGVPSCQRSTAATAAAAYRGLSTSAAALGDNEVALS
ILAAPVTAADMDSKSPAGAEGVGIVTAVGSKVKDLAVHDWVVPTSGSVPT
FRSAAKAKEVDLAKVPSDIPVEFAACMGTALTALRLLSGVKGGEYVLQAD
ADSPVGLAVVQIAQARGVGTINIVTDGPGFFDKAGLIKDLGGDVVVKDTY
ATGNAGFAKILSELPKPSLALAATEAGSAVVGKVGMGLKANLYATAGESS
LKKATASEIESAASMFRSGALQLWVERHPLSDLPVALKEASEPFKTRKVV
VMINEPPRPKVDEAKLSADFEKAFQKLKA*
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mRNA from alignment at chr11:432236..433225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01230.1 ID=NO11G01230.1|Name=NO11G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=990bp|location=Sequence derived from alignment at chr11:432236..433225- (Nannochloropsis oceanica)
ATGGCGTCGTTCCGCGTGGTAGTGGCCTCGCTGTTGGCACGAAGGGGTGT
GCCTTCTTGCCAGAGATCAACCGCTGCCACGGCCGCCGCTGCTTATCGAG
GCCTGTCGACATCCGCTGCGGCGTTGGGGGACAACGAGGTAGCGCTTAGC
ATCCTCGCCGCGCCCGTCACGGCGGCAGACATGGACAGCAAGAGTCCGGC
AGGTGCGGAGGGTGTGGGGATCGTGACGGCGGTGGGGAGCAAGGTCAAAG
ACTTGGCAGTCCATGATTGGGTGGTGCCGACATCGGGCTCGGTACCAACG
TTCCGCAGTGCTGCCAAAGCCAAGGAAGTTGACCTGGCCAAGGTCCCCTC
AGACATTCCTGTAGAATTTGCTGCCTGTATGGGCACGGCGTTGACGGCCT
TGCGGTTGCTGTCGGGTGTCAAGGGTGGGGAGTATGTGTTGCAGGCGGAC
GCGGACTCGCCGGTGGGGTTGGCCGTCGTTCAGATAGCCCAGGCTCGAGG
TGTGGGCACGATTAACATTGTTACGGATGGCCCAGGGTTTTTTGATAAGG
CGGGTTTGATCAAGGATTTGGGTGGGGATGTGGTGGTCAAGGATACCTAT
GCCACAGGTAATGCCGGGTTCGCAAAAATCCTGTCGGAGCTGCCGAAGCC
TAGTCTAGCGCTGGCGGCCACTGAGGCAGGCTCAGCGGTGGTGGGTAAGG
TCGGGATGGGACTGAAGGCCAACTTGTACGCAACAGCGGGGGAGAGCAGT
TTAAAAAAGGCGACGGCGTCGGAAATTGAGTCGGCCGCAAGCATGTTCAG
GTCGGGGGCTTTGCAACTGTGGGTGGAACGACACCCGTTGTCGGACTTGC
CAGTGGCATTAAAGGAGGCCTCTGAACCGTTTAAGACACGCAAGGTGGTA
GTGATGATAAATGAGCCACCCAGGCCGAAGGTTGACGAGGCGAAGCTGTC
CGCGGACTTTGAGAAGGCCTTTCAGAAGCTCAAGGCATAG
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Coding sequence (CDS) from alignment at chr11:432236..433225-

>NO11G01230.1 ID=NO11G01230.1|Name=NO11G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr11:432236..433225- (Nannochloropsis oceanica)
ATGGCGTCGTTCCGCGTGGTAGTGGCCTCGCTGTTGGCACGAAGGGGTGT
GCCTTCTTGCCAGAGATCAACCGCTGCCACGGCCGCCGCTGCTTATCGAG
GCCTGTCGACATCCGCTGCGGCGTTGGGGGACAACGAGGTAGCGCTTAGC
ATCCTCGCCGCGCCCGTCACGGCGGCAGACATGGACAGCAAGAGTCCGGC
AGGTGCGGAGGGTGTGGGGATCGTGACGGCGGTGGGGAGCAAGGTCAAAG
ACTTGGCAGTCCATGATTGGGTGGTGCCGACATCGGGCTCGGTACCAACG
TTCCGCAGTGCTGCCAAAGCCAAGGAAGTTGACCTGGCCAAGGTCCCCTC
AGACATTCCTGTAGAATTTGCTGCCTGTATGGGCACGGCGTTGACGGCCT
TGCGGTTGCTGTCGGGTGTCAAGGGTGGGGAGTATGTGTTGCAGGCGGAC
GCGGACTCGCCGGTGGGGTTGGCCGTCGTTCAGATAGCCCAGGCTCGAGG
TGTGGGCACGATTAACATTGTTACGGATGGCCCAGGGTTTTTTGATAAGG
CGGGTTTGATCAAGGATTTGGGTGGGGATGTGGTGGTCAAGGATACCTAT
GCCACAGGTAATGCCGGGTTCGCAAAAATCCTGTCGGAGCTGCCGAAGCC
TAGTCTAGCGCTGGCGGCCACTGAGGCAGGCTCAGCGGTGGTGGGTAAGG
TCGGGATGGGACTGAAGGCCAACTTGTACGCAACAGCGGGGGAGAGCAGT
TTAAAAAAGGCGACGGCGTCGGAAATTGAGTCGGCCGCAAGCATGTTCAG
GTCGGGGGCTTTGCAACTGTGGGTGGAACGACACCCGTTGTCGGACTTGC
CAGTGGCATTAAAGGAGGCCTCTGAACCGTTTAAGACACGCAAGGTGGTA
GTGATGATAAATGAGCCACCCAGGCCGAAGGTTGACGAGGCGAAGCTGTC
CGCGGACTTTGAGAAGGCCTTTCAGAAGCTCAAGGCATAG
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Synonyms
Publications