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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:423795..426649 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01180.1 vs.
Match: EWM25107.1 (NLI interacting factor [Nannochloropsis gaditana]) HSP 1 Score: 376.7 bits (966), Expect = 7.000e-101 Identity = 193/308 (62.66%), Postives = 223/308 (72.40%), Query Frame = 0
Query: 1 MRHTSEGDRWDNRERENQEIALLRHEVARLRRHVPACRRIPKLLVLDLNGLLVHRVFTGEGPRADAEGPLPTVTTTWRLRNFWVYKRPYVEDFLRFCLDNFFVGVWTTASAANATSLLEGLLSPENIDKLVFLWDGKKCSYNGEMDPIKSGKPMAFKELRRLWESREVAGLFGPNNTLLIDDSHYKASLNPPHTAIHPAAWDDPDAHADDDALGPNGSIRAYLEALTLAEGPIPEFVRTTPFETFIRVRDVAKGLEEVLPSATPRSTTTPEQDYHQQQHALQQHRYGSVNEEEDDYEEDEIVLAPAMA 309
M H S DR +REN EIALL+ EV RLR VP RR PKLL+LDLNGLLVHRVF GEGPRADAEG LP VTTTW L + VYKRPYV+DFLRFCLDNFFVGVWTTASA NAT LL+GLL E++ +L F+WDGK+C+YNGE DP K GKP+AFKELRRLWES++VAGLFGP+NTL+IDDS YKASLNPPHTAIHP AWDDPDAHA DDALGP G+IR YL+AL +E +P+FV PFE F R A R + + + +NEE++D EDEIVLAP ++
Sbjct: 1 MSHDSGRDRRGGGQRENIEIALLKLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGAR------------AATRLVSDASAMLDEGNSVRESESCAPLNEEDED-GEDEIVLAPGVS 295
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01180.1 ID=NO11G01180.1|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp TCTATTGGCTAGCTTTCTTCTTTCTTTTTCTCATCCACAGCCTCGCTGTT TCTCCCTCTTCTGTGTCCTCCTTTTTTCGGCCTCTTTCTTCATCTTTTCC TTTATGAGAAGTTCCTGTCATCGAGGTGTGTGGTGATGGGAAGGGAGGGC AGAGGAGGTGCGCTTCAAAGGAAAACATATTTGCCACAAAATAAAACCAC CACTGTGTGTTTGAACACCTCCACTTTATTCAACACGCAAGACATGCGTA CCTTCTCTCTGATTACCTTCTTCTCGTGTTCCGCCTTGCTCTTCTCACGC AACGCCCTCGCCGCCGCCTCCACCTGCTTCTTGTTACTGTTCTCACCTAG CAATGCTCCAAGCAGAACATCTGCCTCCCCCTTTTCATTACTGCCGTCCT TCCCACTACTTGCTTTCCCTACAGGGTTGCCATCCTCATCCACCACATCG TCGCCAAACGCATATTTATTTAGCAATGCCTCTCTTCCTCGTGCCGTGGC CTTATCTCCCTGCGTCCGCTCAATCAAATTGGCTGCCTGTCTTTCCTGTT CGGCTTGCGCAGCTCGCTTGTCTTGTTCCAACCGCTCTTCATAGCGCCGC CTTTCCTCCGCCTTGTCTGCGTCTATCACGCTCGCTGCGCGTGCTGCCTC AGCTGCATGTCGGACCTCGTATTGTTTCTTTAGTTCCGCTCCAAACCCCC CAAGATCCTCCTCCGTCGCACTCTCTAAGAAGGCCAGGACGGACTCCACG CGTTCTTCCAGTTTCCCTCCGTCCTCGTCGTCCATGATGCCCTCAATATA GCCCTTGTATACGTCTGAGTCGAGGGACAAGCGCTCGAGCTGAGCCTCTA GGTCGAATGTCGCCGCATCTCTTGTGTCCGTGCTGGACATGATGCGGCTG GTGGTGATGGTCCTGCTGATATTGTTCCTGCTGGAGTTGCCCGTGTTCTG AACCAGGATTCCTGGTGGCAGGCATGTAAAGGGAGGCAAATGAGAATTAA TTACATTGAACGAAACCTCCTCACCCCCTCCTCGCCCATCACACTATTAC TCCCCGTCAAGTTTCCTACAGCCACTAAGGCTACCAACCTATAAAGCACC ATATACAGCCACAGGATCCTCAACAATGCGGCACACCAGTGAAGGGGACC GATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCAC GAGGTTGCGCGTCTTCGTCGGCATGTTCCCGCTTGTAGAAGAATACCAAA GCTGCTGGTGCTGGACTTGAATGGGCTGCTGGTACATCGAGTCTTCACAG GCGAGGGTCCAAGGGCAGATGCTGAAGGTCCACTTCCTACGGTGACCACG ACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCGGCCATACGTGGAAGA CTTCTTGAGATTTTGCCTGGACAACTTCTTCGTGGGCGTGTGGACGACAG CTTCGGCCGCAAATGCCACGTCGCTCCTGGAGGGCCTCTTGTCACCGGAG AACATCGATAAGCTCGTGTTTCTATGGGACGGCAAGAAGTGCTCGTATAA TGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTTAAGGAAT TGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGGCCCGAAC AACACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACC TCACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCG ATGACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCA TTAACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTT CGAGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGT TGCCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCAT CAGCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGA GGAGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGG GCTTGCGGATGGATTAGGGGGATAGAGGGAAGTGTGGGAGGAGATTATTT TGACCGATTGTATCATAAAAATAAAAGCTTGTACGTTAAATATTGTCAGC AAAGGGCTCAAAGTATCAATCATTAGATCTTCAAATTTGCCGGTTGTTTA GATGTGCGCGGGGAGTCTTTTGTGATGCTGGCATTGCCGCTTGCAGCTTA TCGCCAG back to topprotein sequence of NO11G01180.1 >NO11G01180.1-protein ID=NO11G01180.1-protein|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp MRHTSEGDRWDNRERENQEIALLRHEVARLRRHVPACRRIPKLLVLDLNG LLVHRVFTGEGPRADAEGPLPTVTTTWRLRNFWVYKRPYVEDFLRFCLDN FFVGVWTTASAANATSLLEGLLSPENIDKLVFLWDGKKCSYNGEMDPIKS GKPMAFKELRRLWESREVAGLFGPNNTLLIDDSHYKASLNPPHTAIHPAA WDDPDAHADDDALGPNGSIRAYLEALTLAEGPIPEFVRTTPFETFIRVRD VAKGLEEVLPSATPRSTTTPEQDYHQQQHALQQHRYGSVNEEEDDYEEDE IVLAPAMAGLRMD* back to topmRNA from alignment at chr11:423795..426649- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01180.1 ID=NO11G01180.1|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2855bp|location=Sequence derived from alignment at chr11:423795..426649- (Nannochloropsis oceanica) TCTATTGGCTAGCTTTCTTCTTTCTTTTTCTCATCCACAGCCTCGCTGTT
TCTCCCTCTTCTGTGTCCTCCTTTTTTCGGCCTCTTTCTTCATCTTTTCC
TTTATGAGAAGTTCCTGTCATCGAGGTGTGTGGTGATGGGAAGGGAGGGC
AGAGGAGGTGCGCTTCAAAGGAAAACATATTTGCCACAAAATAAAACCAC
CACTGTGTGTTTGAACACCTCCACTTTATTCAACACGCAAGACATGCGTA
CCTTCTCTCTGATTACCTTCTTCTCGTGTTCCGCCTTGCTCTTCTCACGC
AACGCCCTCGCCGCCGCCTCCACCTGCTTCTTGTTACTGTTCTCACCTAG
CAATGCTCCAAGCAGAACATCTGCCTCCCCCTTTTCATTACTGCCGTCCT
TCCCACTACTTGCTTTCCCTACAGGGTTGCCATCCTCATCCACCACATCG
TCGCCAAACGCATATTTATTTAGCAATGCCTCTCTTCCTCGTGCCGTGGC
CTTATCTCCCTGCGTCCGCTCAATCAAATTGGCTGCCTGTCTTTCCTGTT
CGGCTTGCGCAGCTCGCTTGTCTTGTTCCAACCGCTCTTCATAGCGCCGC
CTTTCCTCCGCCTTGTCTGCGTCTATCACGCTCGCTGCGCGTGCTGCCTC
AGCTGCATGTCGGACCTCGTATTGTTTCTTTAGTTCCGCTCCAAACCCCC
CAAGATCCTCCTCCGTCGCACTCTCTAAGAAGGCCAGGACGGACTCCACG
CGTTCTTCCAGTTTCCCTCCGTCCTCGTCGTCCATGATGCCCTCAATATA
GCCCTTGTATACGTCTGAGTCGAGGGACAAGCGCTCGAGCTGAGCCTCTA
GGTCGAATGTCGCCGCATCTCTTGTGTCCGTGCTGGACATGATGCGGCTG
GTGGTGATGGTCCTGCTGATATTGTTCCTGCTGGAGTTGCCCGTGTTCTG
AACCAGGATTCCTGGTGGCAGGCATGTAAAGGGAGGCAAATGAGAATTAA
TTACATTGAACGAAACCTCCTCACCCCCTCCTCGCCCATCACACTATTAC
TCCCCGTCAAGTTTCCTACAGCCACTAAGGCTACCAACCTATAAAGCACC
ATATACAGCCACAGGATCCTCAACAATGCGGCACACCAGTGAAGGGGACC
GATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCAC
GAGGTTGCGGTGAGTTTGGTGATGCCGCTACGACATGCACACAGGCCCTG
GCATTGATCATCTTCCTCCACCCCAACATCAACCTACAGCGTCTTCGTCG
GCATGTTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGA
ATGGGCTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGGT
GAGAGGAGGGGGGGAGAAAGGGAAAAAGGAGCATATGGGAAATGGCCATA
CTTCGAAACTTAAGTCTTGCAACGTACATACAGATGCTGAAGGTCCACTT
CCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCG
GCCATACGTGGAAGACTTCTTGAGGTGAGGAACGCGGAAAGTAGAGGAGA
GGCGGGGAATTAGCTGTGAGTCTATGGTAGGCTAGAAATGATTTTCTATT
CTGACATATGTACCCTGTTTGTTCTAGATTTTGCCTGGACAACTTCTTCG
TGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCTCCTGGAG
GGCCTCTTGTCACCGGTGCGTGAGGAAGCAGGAAGGATGGCTGGGCTGAG
GATCTATTTTCACAGAGAGTCTAAATAAAAACAATTCACTTATTAAAAAT
ATATGTTTATATTCAATCTTAGGAGAACATCGATAAGCTCGTGTTTCTAT
GGGACGGCAAGAAGTAAGTGCGCCTGACCCTCCTTGTCTCCCTCCTTTTT
TTAATTGCCAAGACTCATCCTAATTTTTTTAATCTCATTTCCCAGGTGCT
CGTATAATGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTT
AAGGAATTGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGG
TACGTCTCGGGGGGGTCTACCGGACGGAGGAGGAAAGGAAAGTAACGCTT
GTTTTGCGTTCGACGGGCGTCCTCGGTCTCAGGCTTATCTTATTTTTCTC
CGTTGGCATACCTTTTATTATTTCCCCCTCAATTATACAGGCCCGAACAA
CACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACCTC
ACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCGAT
GACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCATT
AACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTTCG
AGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGTTG
CCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCATCA
GCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGAGG
AGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGGGC
TTGCGGATGGATTAGGGGGATAGAGGGAAGTGTGGGAGGAGATTATTTTG
ACCGATTGTATCATAAAAATAAAAGCTTGTACGTTAAATATTGTCAGCAA
AGGGCTCAAAGTATCAATCATTAGATCTTCAAATTTGCCGGTTGTTTAGA
TGTGCGCGGGGAGTCTTTTGTGATGCTGGCATTGCCGCTTGCAGCTTATC
GCCAG back to topCoding sequence (CDS) from alignment at chr11:423795..426649- >NO11G01180.1 ID=NO11G01180.1|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr11:423795..426649- (Nannochloropsis oceanica) ATGCGGCACACCAGTGAAGGGGACCGATGGGACAACCGTGAACGGGAAAA CCAGGAAATAGCATTGCTGAGGCACGAGGTTGCGCGTCTTCGTCGGCATG TTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGAATGGG CTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGATGCTGA AGGTCCACTTCCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGG TTTACAAGCGGCCATACGTGGAAGACTTCTTGAGATTTTGCCTGGACAAC TTCTTCGTGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCT CCTGGAGGGCCTCTTGTCACCGGAGAACATCGATAAGCTCGTGTTTCTAT GGGACGGCAAGAAGTGCTCGTATAATGGAGAAATGGATCCCATCAAATCG GGCAAACCCATGGCTTTTAAGGAATTGCGGCGCCTGTGGGAAAGCAGGGA AGTGGCGGGCCTTTTTGGCCCGAACAACACTTTGCTAATCGATGATTCCC ACTATAAGGCCTCGCTGAATCCACCTCACACCGCCATCCACCCCGCCGCT TGGGACGATCCCGATGCCCACGCCGATGACGATGCCCTGGGGCCCAACGG CAGCATCCGCGCTTATTTAGAAGCATTAACATTGGCAGAAGGGCCAATTC CTGAGTTTGTGCGCACCACACCCTTCGAGACCTTTATCAGGGTAAGAGAT GTGGCGAAGGGGCTGGAAGAGGTGTTGCCATCAGCAACACCGAGGAGCAC GACCACGCCTGAGCAGGATTACCATCAGCAGCAGCATGCGTTGCAGCAAC ATCGATATGGCAGTGTGAACGAAGAGGAGGACGACTACGAGGAGGACGAG ATCGTGCTCGCGCCGGCCATGGCGGGCTTGCGGATGGATTAG back to top
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