NO11G01180.1, NO11G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01180.1
Unique NameNO11G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2257
Alignment locationchr11:423795..426649 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:423795..426649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01180.1 vs.
Match: EWM25107.1 (NLI interacting factor [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 7.000e-101
Identity = 193/308 (62.66%), Postives = 223/308 (72.40%), Query Frame = 0
Query:    1 MRHTSEGDRWDNRERENQEIALLRHEVARLRRHVPACRRIPKLLVLDLNGLLVHRVFTGEGPRADAEGPLPTVTTTWRLRNFWVYKRPYVEDFLRFCLDNFFVGVWTTASAANATSLLEGLLSPENIDKLVFLWDGKKCSYNGEMDPIKSGKPMAFKELRRLWESREVAGLFGPNNTLLIDDSHYKASLNPPHTAIHPAAWDDPDAHADDDALGPNGSIRAYLEALTLAEGPIPEFVRTTPFETFIRVRDVAKGLEEVLPSATPRSTTTPEQDYHQQQHALQQHRYGSVNEEEDDYEEDEIVLAPAMA 309
            M H S  DR    +REN EIALL+ EV RLR  VP  RR PKLL+LDLNGLLVHRVF GEGPRADAEG LP VTTTW L +  VYKRPYV+DFLRFCLDNFFVGVWTTASA NAT LL+GLL  E++ +L F+WDGK+C+YNGE DP K GKP+AFKELRRLWES++VAGLFGP+NTL+IDDS YKASLNPPHTAIHP AWDDPDAHA DDALGP G+IR YL+AL  +E  +P+FV   PFE F   R            A  R  +       +     +      +NEE++D  EDEIVLAP ++
Sbjct:    1 MSHDSGRDRRGGGQRENIEIALLKLEVERLRSLVPTYRRRPKLLILDLNGLLVHRVFVGEGPRADAEGALPRVTTTWCLNSCLVYKRPYVKDFLRFCLDNFFVGVWTTASAINATPLLKGLLPEEDVARLAFIWDGKRCTYNGETDPAKPGKPIAFKELRRLWESKDVAGLFGPSNTLMIDDSRYKASLNPPHTAIHPPAWDDPDAHASDDALGPLGNIRLYLQALLDSEVSVPDFVSARPFEAFQGAR------------AATRLVSDASAMLDEGNSVRESESCAPLNEEDED-GEDEIVLAPGVS 295          
The following BLAST results are available for this feature:
BLAST of NO11G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25107.17.000e-10162.66NLI interacting factor [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01180NO11G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01180.1NO11G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01180.1.cds1NO11G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01180.1.cds2NO11G01180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01180.1.cds3NO11G01180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01180.1.cds4NO11G01180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01180.1.cds5NO11G01180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01180.1.cds6NO11G01180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01180.1.cds7NO11G01180.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01180.1 ID=NO11G01180.1|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp
TCTATTGGCTAGCTTTCTTCTTTCTTTTTCTCATCCACAGCCTCGCTGTT
TCTCCCTCTTCTGTGTCCTCCTTTTTTCGGCCTCTTTCTTCATCTTTTCC
TTTATGAGAAGTTCCTGTCATCGAGGTGTGTGGTGATGGGAAGGGAGGGC
AGAGGAGGTGCGCTTCAAAGGAAAACATATTTGCCACAAAATAAAACCAC
CACTGTGTGTTTGAACACCTCCACTTTATTCAACACGCAAGACATGCGTA
CCTTCTCTCTGATTACCTTCTTCTCGTGTTCCGCCTTGCTCTTCTCACGC
AACGCCCTCGCCGCCGCCTCCACCTGCTTCTTGTTACTGTTCTCACCTAG
CAATGCTCCAAGCAGAACATCTGCCTCCCCCTTTTCATTACTGCCGTCCT
TCCCACTACTTGCTTTCCCTACAGGGTTGCCATCCTCATCCACCACATCG
TCGCCAAACGCATATTTATTTAGCAATGCCTCTCTTCCTCGTGCCGTGGC
CTTATCTCCCTGCGTCCGCTCAATCAAATTGGCTGCCTGTCTTTCCTGTT
CGGCTTGCGCAGCTCGCTTGTCTTGTTCCAACCGCTCTTCATAGCGCCGC
CTTTCCTCCGCCTTGTCTGCGTCTATCACGCTCGCTGCGCGTGCTGCCTC
AGCTGCATGTCGGACCTCGTATTGTTTCTTTAGTTCCGCTCCAAACCCCC
CAAGATCCTCCTCCGTCGCACTCTCTAAGAAGGCCAGGACGGACTCCACG
CGTTCTTCCAGTTTCCCTCCGTCCTCGTCGTCCATGATGCCCTCAATATA
GCCCTTGTATACGTCTGAGTCGAGGGACAAGCGCTCGAGCTGAGCCTCTA
GGTCGAATGTCGCCGCATCTCTTGTGTCCGTGCTGGACATGATGCGGCTG
GTGGTGATGGTCCTGCTGATATTGTTCCTGCTGGAGTTGCCCGTGTTCTG
AACCAGGATTCCTGGTGGCAGGCATGTAAAGGGAGGCAAATGAGAATTAA
TTACATTGAACGAAACCTCCTCACCCCCTCCTCGCCCATCACACTATTAC
TCCCCGTCAAGTTTCCTACAGCCACTAAGGCTACCAACCTATAAAGCACC
ATATACAGCCACAGGATCCTCAACAATGCGGCACACCAGTGAAGGGGACC
GATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCAC
GAGGTTGCGCGTCTTCGTCGGCATGTTCCCGCTTGTAGAAGAATACCAAA
GCTGCTGGTGCTGGACTTGAATGGGCTGCTGGTACATCGAGTCTTCACAG
GCGAGGGTCCAAGGGCAGATGCTGAAGGTCCACTTCCTACGGTGACCACG
ACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCGGCCATACGTGGAAGA
CTTCTTGAGATTTTGCCTGGACAACTTCTTCGTGGGCGTGTGGACGACAG
CTTCGGCCGCAAATGCCACGTCGCTCCTGGAGGGCCTCTTGTCACCGGAG
AACATCGATAAGCTCGTGTTTCTATGGGACGGCAAGAAGTGCTCGTATAA
TGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTTAAGGAAT
TGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGGCCCGAAC
AACACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACC
TCACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCG
ATGACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCA
TTAACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTT
CGAGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGT
TGCCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCAT
CAGCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGA
GGAGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGG
GCTTGCGGATGGATTAGGGGGATAGAGGGAAGTGTGGGAGGAGATTATTT
TGACCGATTGTATCATAAAAATAAAAGCTTGTACGTTAAATATTGTCAGC
AAAGGGCTCAAAGTATCAATCATTAGATCTTCAAATTTGCCGGTTGTTTA
GATGTGCGCGGGGAGTCTTTTGTGATGCTGGCATTGCCGCTTGCAGCTTA
TCGCCAG
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protein sequence of NO11G01180.1

>NO11G01180.1-protein ID=NO11G01180.1-protein|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MRHTSEGDRWDNRERENQEIALLRHEVARLRRHVPACRRIPKLLVLDLNG
LLVHRVFTGEGPRADAEGPLPTVTTTWRLRNFWVYKRPYVEDFLRFCLDN
FFVGVWTTASAANATSLLEGLLSPENIDKLVFLWDGKKCSYNGEMDPIKS
GKPMAFKELRRLWESREVAGLFGPNNTLLIDDSHYKASLNPPHTAIHPAA
WDDPDAHADDDALGPNGSIRAYLEALTLAEGPIPEFVRTTPFETFIRVRD
VAKGLEEVLPSATPRSTTTPEQDYHQQQHALQQHRYGSVNEEEDDYEEDE
IVLAPAMAGLRMD*
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mRNA from alignment at chr11:423795..426649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01180.1 ID=NO11G01180.1|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2855bp|location=Sequence derived from alignment at chr11:423795..426649- (Nannochloropsis oceanica)
TCTATTGGCTAGCTTTCTTCTTTCTTTTTCTCATCCACAGCCTCGCTGTT TCTCCCTCTTCTGTGTCCTCCTTTTTTCGGCCTCTTTCTTCATCTTTTCC TTTATGAGAAGTTCCTGTCATCGAGGTGTGTGGTGATGGGAAGGGAGGGC AGAGGAGGTGCGCTTCAAAGGAAAACATATTTGCCACAAAATAAAACCAC CACTGTGTGTTTGAACACCTCCACTTTATTCAACACGCAAGACATGCGTA CCTTCTCTCTGATTACCTTCTTCTCGTGTTCCGCCTTGCTCTTCTCACGC AACGCCCTCGCCGCCGCCTCCACCTGCTTCTTGTTACTGTTCTCACCTAG CAATGCTCCAAGCAGAACATCTGCCTCCCCCTTTTCATTACTGCCGTCCT TCCCACTACTTGCTTTCCCTACAGGGTTGCCATCCTCATCCACCACATCG TCGCCAAACGCATATTTATTTAGCAATGCCTCTCTTCCTCGTGCCGTGGC CTTATCTCCCTGCGTCCGCTCAATCAAATTGGCTGCCTGTCTTTCCTGTT CGGCTTGCGCAGCTCGCTTGTCTTGTTCCAACCGCTCTTCATAGCGCCGC CTTTCCTCCGCCTTGTCTGCGTCTATCACGCTCGCTGCGCGTGCTGCCTC AGCTGCATGTCGGACCTCGTATTGTTTCTTTAGTTCCGCTCCAAACCCCC CAAGATCCTCCTCCGTCGCACTCTCTAAGAAGGCCAGGACGGACTCCACG CGTTCTTCCAGTTTCCCTCCGTCCTCGTCGTCCATGATGCCCTCAATATA GCCCTTGTATACGTCTGAGTCGAGGGACAAGCGCTCGAGCTGAGCCTCTA GGTCGAATGTCGCCGCATCTCTTGTGTCCGTGCTGGACATGATGCGGCTG GTGGTGATGGTCCTGCTGATATTGTTCCTGCTGGAGTTGCCCGTGTTCTG AACCAGGATTCCTGGTGGCAGGCATGTAAAGGGAGGCAAATGAGAATTAA TTACATTGAACGAAACCTCCTCACCCCCTCCTCGCCCATCACACTATTAC TCCCCGTCAAGTTTCCTACAGCCACTAAGGCTACCAACCTATAAAGCACC ATATACAGCCACAGGATCCTCAACAATGCGGCACACCAGTGAAGGGGACC GATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCAC GAGGTTGCGGTGAGTTTGGTGATGCCGCTACGACATGCACACAGGCCCTG GCATTGATCATCTTCCTCCACCCCAACATCAACCTACAGCGTCTTCGTCG GCATGTTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGA ATGGGCTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGGT GAGAGGAGGGGGGGAGAAAGGGAAAAAGGAGCATATGGGAAATGGCCATA CTTCGAAACTTAAGTCTTGCAACGTACATACAGATGCTGAAGGTCCACTT CCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCG GCCATACGTGGAAGACTTCTTGAGGTGAGGAACGCGGAAAGTAGAGGAGA GGCGGGGAATTAGCTGTGAGTCTATGGTAGGCTAGAAATGATTTTCTATT CTGACATATGTACCCTGTTTGTTCTAGATTTTGCCTGGACAACTTCTTCG TGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCTCCTGGAG GGCCTCTTGTCACCGGTGCGTGAGGAAGCAGGAAGGATGGCTGGGCTGAG GATCTATTTTCACAGAGAGTCTAAATAAAAACAATTCACTTATTAAAAAT ATATGTTTATATTCAATCTTAGGAGAACATCGATAAGCTCGTGTTTCTAT GGGACGGCAAGAAGTAAGTGCGCCTGACCCTCCTTGTCTCCCTCCTTTTT TTAATTGCCAAGACTCATCCTAATTTTTTTAATCTCATTTCCCAGGTGCT CGTATAATGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTT AAGGAATTGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGG TACGTCTCGGGGGGGTCTACCGGACGGAGGAGGAAAGGAAAGTAACGCTT GTTTTGCGTTCGACGGGCGTCCTCGGTCTCAGGCTTATCTTATTTTTCTC CGTTGGCATACCTTTTATTATTTCCCCCTCAATTATACAGGCCCGAACAA CACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACCTC ACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCGAT GACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCATT AACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTTCG AGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGTTG CCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCATCA GCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGAGG AGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGGGC TTGCGGATGGATTAGGGGGATAGAGGGAAGTGTGGGAGGAGATTATTTTG ACCGATTGTATCATAAAAATAAAAGCTTGTACGTTAAATATTGTCAGCAA AGGGCTCAAAGTATCAATCATTAGATCTTCAAATTTGCCGGTTGTTTAGA TGTGCGCGGGGAGTCTTTTGTGATGCTGGCATTGCCGCTTGCAGCTTATC GCCAG
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Coding sequence (CDS) from alignment at chr11:423795..426649-

>NO11G01180.1 ID=NO11G01180.1|Name=NO11G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr11:423795..426649- (Nannochloropsis oceanica)
ATGCGGCACACCAGTGAAGGGGACCGATGGGACAACCGTGAACGGGAAAA
CCAGGAAATAGCATTGCTGAGGCACGAGGTTGCGCGTCTTCGTCGGCATG
TTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGAATGGG
CTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGATGCTGA
AGGTCCACTTCCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGG
TTTACAAGCGGCCATACGTGGAAGACTTCTTGAGATTTTGCCTGGACAAC
TTCTTCGTGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCT
CCTGGAGGGCCTCTTGTCACCGGAGAACATCGATAAGCTCGTGTTTCTAT
GGGACGGCAAGAAGTGCTCGTATAATGGAGAAATGGATCCCATCAAATCG
GGCAAACCCATGGCTTTTAAGGAATTGCGGCGCCTGTGGGAAAGCAGGGA
AGTGGCGGGCCTTTTTGGCCCGAACAACACTTTGCTAATCGATGATTCCC
ACTATAAGGCCTCGCTGAATCCACCTCACACCGCCATCCACCCCGCCGCT
TGGGACGATCCCGATGCCCACGCCGATGACGATGCCCTGGGGCCCAACGG
CAGCATCCGCGCTTATTTAGAAGCATTAACATTGGCAGAAGGGCCAATTC
CTGAGTTTGTGCGCACCACACCCTTCGAGACCTTTATCAGGGTAAGAGAT
GTGGCGAAGGGGCTGGAAGAGGTGTTGCCATCAGCAACACCGAGGAGCAC
GACCACGCCTGAGCAGGATTACCATCAGCAGCAGCATGCGTTGCAGCAAC
ATCGATATGGCAGTGTGAACGAAGAGGAGGACGACTACGAGGAGGACGAG
ATCGTGCTCGCGCCGGCCATGGCGGGCTTGCGGATGGATTAG
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Synonyms
Publications