NO11G01170.1, NO11G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01170.1
Unique NameNO11G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr11:422090..423676 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:422090..423676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01170.1 vs.
Match: EWM25118.1 (Lamin Tail domain protein [Nannochloropsis gaditana])

HSP 1 Score: 493.4 bits (1269), Expect = 7.200e-136
Identity = 249/444 (56.08%), Postives = 325/444 (73.20%), Query Frame = 0 
Query:    1 MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVVSNPDVTPLDLGGHYLCDK-DNHRFEFEDAYVLAPGADVHVYMCPGKHPVTEEEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAAPRVEGEEVEEDNGTAGP----EGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAGMVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIADRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFEVLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQRAPWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVPLPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV 440
            MRRL+EIPWLDE     TS     PRRRSI Y+ PPY+ +VD+ RE+I +SNP+  P+DL GH LCDK  +HR+EFE+ Y LAPGA++HVY  PGK+ V EEE+PG+LQI+LW T++ +PRRRE+L+  GD++TLID NG+EIAALEVT     E EE E +    G     E  KRLYLY L +LQ+KYAK  VT+LQG+RLA MVL F+ VL N+L +YV+LE+    LD+AARY+DP+R PRSRQRVFAL+ADRL+SASLL VLMTG++E G   Y  P+P+ RVRLG GMLL+++L+ WFEVLVE STR+  AA+DA  P+W+Q   P  EE ++VQ+GPYRKWLR +L R P L+T  TGGNHLFL+LAV RLA A  G  +  + + +  A R+   +PLP  + + W  L+ A+C + +YR +L+W EL+DL+ESK+
Sbjct:    1 MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRVFALVADRLDSASLLAVLMTGLVETGGPLY-GPNPVHRVRLGLGMLLIEVLAFWFEVLVEGSTRL--AAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHLGRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAYLPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL 441
The following BLAST results are available for this feature:
BLAST of NO11G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25118.17.200e-13656.08Lamin Tail domain protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01170NO11G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01170.1NO11G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01170.1.cds1NO11G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01170.1 ID=NO11G01170.1|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
ATTACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCT
TCTCACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTC
ACGCGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACA
ACACGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTG
GCACATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTC
TACAAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGAT
TGTCGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACT
TGTGTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTG
GCACCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGT
GACGGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAA
AAGACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAG
ATCACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGAC
GGCAGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCG
CAGGGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTC
CAGATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCT
GGCGGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTG
CCTATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGG
TACATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTT
GATCGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGG
GCGTCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGT
CGTGTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTG
GTTCGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTG
ATGCCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAA
GCAATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCT
ACAACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGT
TCCTCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGA
CAATGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGT
TGTACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTG
CGATGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTG
ATGGATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCT
CGGTGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGC
TGAGCTGAAAATAGTGCGATCACGAAGTCAGGCAGTG
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protein sequence of NO11G01170.1

>NO11G01170.1-protein ID=NO11G01170.1-protein|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVV
SNPDVTPLDLGGHYLCDKDNHRFEFEDAYVLAPGADVHVYMCPGKHPVTE
EEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAA
PRVEGEEVEEDNGTAGPEGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAG
MVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIA
DRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFE
VLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQR
APWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVP
LPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV*
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mRNA from alignment at chr11:422090..423676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01170.1 ID=NO11G01170.1|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp|location=Sequence derived from alignment at chr11:422090..423676- (Nannochloropsis oceanica)
ATTACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCT
TCTCACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTC
ACGCGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACA
ACACGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTG
GCACATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTC
TACAAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGAT
TGTCGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACT
TGTGTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTG
GCACCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGT
GACGGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAA
AAGACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAG
ATCACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGAC
GGCAGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCG
CAGGGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTC
CAGATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCT
GGCGGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTG
CCTATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGG
TACATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTT
GATCGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGG
GCGTCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGT
CGTGTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTG
GTTCGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTG
ATGCCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAA
GCAATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCT
ACAACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGT
TCCTCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGA
CAATGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGT
TGTACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTG
CGATGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTG
ATGGATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCT
CGGTGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGC
TGAGCTGAAAATAGTGCGATCACGAAGTCAGGCAGTG
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Coding sequence (CDS) from alignment at chr11:422090..423676-

>NO11G01170.1 ID=NO11G01170.1|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr11:422090..423676- (Nannochloropsis oceanica)
ATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTGGCACATG
CACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTCTACAAGC
TGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGATTGTCGTC
TCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACTTGTGTGA
TAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTGGCACCTG
GCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGTGACGGAG
GAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAAAAGACAA
CAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAGATCACAT
TGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGACGGCAGCG
CCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCGCAGGGCC
AGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTCCAGATCA
AGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCTGGCGGGG
ATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTGCCTATGT
GGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGGTACATCG
ATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTTGATCGCT
GATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGGGCGTCTT
GGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGTCGTGTCC
GTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTGGTTCGAA
GTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTGATGCCGC
AACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAAGCAATGG
CCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCTACAACGT
GCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGTTCCTCCT
CTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGACAATGGT
GGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGTTGTACCT
CTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTGCGATGTG
TGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTGATGGATT
TGATTGAAAGCAAGGTGTGA
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Synonyms
Publications