NO11G01160.2, NO11G01160.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01160.2
Unique NameNO11G01160.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3132
Alignment locationchr11:418772..422033 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:418772..422033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01160.2 vs.
Match: EWM25128.1 (ran protein binding protein [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 9.100e-16
Identity = 89/219 (40.64%), Postives = 111/219 (50.68%), Query Frame = 0
Query:  318 AGGREGGQVYVHGSAGVGAGAAGGVGLDE-PPTAVYVKCKAAEGAELGTHQDELCALLLGMAVEGDSVLSYKVNKSQFSVFVEFEKPESVARIMAASRAEPKRFFLVNSVQGRSRFNLYLDVKRPPGQPGVSHVMGSREGGFRVVGGAGQDHGDQQGGVGRRGGGGGMGGRGGGEKGGYQYSSGSSSNITTNTTTSNNKDRPAGPNGAGRSRVRREAQK 536
            A  +EG        A    G  G VG+ E   T    + +A EGAELG H+ EL ALL+G+   G  V  Y+VNKSQ+SVFVE    ESVAR+M   RA+PKRF L +      +  L+LDVKRPPGQ G                     HG   G  GRRGG G   G GGGE+G    +  +S       +  + K RP GP+GAGR R R + +K
Sbjct:  199 AAEKEGAMAIARVQAEAMRGQEG-VGVQERKETKEEEEEEAEEGAELGMHEAELTALLVGVGGAGTVVRDYRVNKSQYSVFVELGDAESVARVMGVVRADPKRFHLRD-----GQIPLFLDVKRPPGQLG--------------------PHG---GASGRRGGIG--RGLGGGERGSLLNNGSNSRGGGNENSEHSKKGRPLGPDGAGRGRRREKGEK 386          
The following BLAST results are available for this feature:
BLAST of NO11G01160.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25128.19.100e-1640.64ran protein binding protein [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01160NO11G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01160.2NO11G01160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01160.2.cds1NO11G01160.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01160.2 ID=NO11G01160.2|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp
TCTCGCCGTCATGATGCATCGCCGCGTGCCTTATCTTGTCCTCTCACCTC
TGGCTTGTCCATGTCTCCCACAAAACACAACACCAACTTGATCGGGAATG
GCAAAAAATACAGCACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCG
GTCTTGTCGGGTCGTTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTG
ACATTGCACCATCTTAATCTAGACCTGAACCAAAACAACGACAAGCCAAG
CACACGTCCAAACCAATGACTGTCAACCACGACGTGCTGTGGGAGCTCCA
GCGCCAGTACGCACGTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCAT
CCCCACTTAAGCAACTCATTCGTTCCACTCATGCACACGAACACAGGCGG
AGAGACGGAGACGAAGACGATGGCCTCAACGAGCAGCAGCACGACTGGCA
TTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATG
AGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAA
GTTCATTTTAGCATACTATCCCGTCATGTCCAAAAGTGCGGAGGAGCTCA
TCAAGTTCTACAAGGAGGATTCCTCCTTCTCTCATACTAACATAGCGGAA
GGTACGTCGTAGACTCGACTTTAGCAAAGAAGGGGAATAGGAGTAGGAGA
GTAAAGGATCAGGAAGATAGATTTGTTTTGACGTCTTTTCGTTTTTGCTC
AGGCTGATGACTTGTCTGCTAACATGCCTGTCGTCTCTGATACTTCTTTT
CTCTTACTGATACTTTCCCCCTTTTGTGTATTTTACCCCATTTTCTCTGC
AACTTGTGAAAATTTCTCCTGTCACCTTCCCTTTCTCTTATCCCCATCAA
AACCTCTACTCTCAAGTCACCGAGGGCCAAGACAACAAACCCGCCTACGG
CCTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGGGGCCG
TCGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCGCTGTC
CTCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCGCCTCG
TGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGAGACGC
ATTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGCCTGTG
ACCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTATCATC
CTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTCCCCCA
AATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAAGGAAG
GAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTGCAGGA
GCAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGAAGGAG
CATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGAAGGAT
AAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCTTCATC
TTTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCCTGTGG
CTACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGCCTCAG
CAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTGGTGGA
GCATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGAAAGTG
GCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTGCTGCT
GCTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGCTGGAG
CGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGAGCATAGAGAAGTGAAGA
TCAGCGGCAGTAGCAGCAGCAGCAGGTCGGGCGGAGTACGGGGTAGAGGC
AGGGGCGACAGTCCAGCACACAGCCGTGGTGGGTCCTCTTCTCCCTCGAA
AAAGGGACGCAGGGAAGGCGGAGCAGGAGGTAGAGAAGGTGGGCAAGTAT
ACGTGCATGGGTCAGCCGGCGTTGGTGCTGGTGCTGCTGGTGGTGTGGGT
TTGGACGAGCCACCGACTGCGGTGTACGTGAAATGTAAAGCGGCTGAAGG
GGCAGAACTGGGGACACACCAAGACGAGCTGTGTGCCTTGTTGCTGGGGA
TGGCGGTCGAGGGGGACTCGGTGCTGAGCTATAAGGTGAATAAGAGCCAG
TTTTCCGTGTTCGTGGAGTTCGAGAAGCCAGAGTCAGTTGCGCGAATCAT
GGCGGCGTCGAGGGCGGAGCCGAAGCGATTTTTCTTAGTGAATAGCGTGC
AGGGGAGGAGCAGGTTTAATCTGTATCTGGACGTGAAGCGGCCGCCGGGA
CAGCCGGGCGTGAGCCATGTGATGGGAAGCAGGGAGGGAGGGTTTAGGGT
TGTGGGGGGAGCGGGACAGGATCACGGAGACCAACAGGGAGGGGTCGGAA
GAAGAGGAGGAGGAGGAGGGATGGGCGGAAGAGGGGGAGGAGAAAAGGGG
GGATATCAGTACAGCAGCGGCAGCAGCAGCAACATCACGACTAACACCAC
CACAAGCAACAATAAGGATCGGCCAGCAGGGCCGAATGGCGCGGGGCGGA
GCCGTGTCCGCCGGGAGGCACAAAAGCGAGAAAAGTAATTTAAAGTAGAA
TGAAGTTACCGCTTTGACTGAAGAAGTGAAACGATTGAAGTGTGGCAGAG
TAAGTGTGTAAGGAGCTGGGTGTTCAGAAATGCGTATATATATATGTGCC
TCTGCCTCCTGCTGGAAGGAGAAGGAGTAGGATATATTATAGGGTAGAAG
AGAAGGAAAAGAGACAAGTTGAATGTGTGTGATTCGGAACCTGTGAGCGT
GTGCGAAGAAGCGAGAGGATGGCACAAGGGTAGAAAAAAAGGAAACAACA
ATATTGGACCGGTAACGTGTTGGGGAAGATAGAGTGTAAGCTGATCGGGG
AGAAAGAGAGGTAACCATCCCAAAATGATCTCGACAGGATCACTCTATCG
CGAAACAGAATGCATGACGCATCACTCTTTACATGCACACATAGACACAC
ATAGACACGCCAGTCCACAAAAGGTGAAAGGA
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protein sequence of NO11G01160.2

>NO11G01160.2-protein ID=NO11G01160.2-protein|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MTRRGGKPPRAFVQTFFLAQQENNETHYYLLNDVFRTLEEPPVTTRSPTP
TPPAAISLSSSIVKTAAGAASVSLSPKCETVAVVQEEGDKERKEGGQDMG
AEGEEQQLQEQQQQQTLQRKIEEGEGALAMNGIREEAQGKKKDKKKKAVE
ERGLSPEASSFTTSSSSTGDPPLVPVATHTPPLLVGEAAPPPQQQQQPQG
VEKEKGNVVEHKHQKQQKDDSGRRESGPSAAAAPAAPAAAPAAAPAHTLA
PLSGPPPSWSAIVGKKGEEEEHREVKISGSSSSSRSGGVRGRGRGDSPAH
SRGGSSSPSKKGRREGGAGGREGGQVYVHGSAGVGAGAAGGVGLDEPPTA
VYVKCKAAEGAELGTHQDELCALLLGMAVEGDSVLSYKVNKSQFSVFVEF
EKPESVARIMAASRAEPKRFFLVNSVQGRSRFNLYLDVKRPPGQPGVSHV
MGSREGGFRVVGGAGQDHGDQQGGVGRRGGGGGMGGRGGGEKGGYQYSSG
SSSNITTNTTTSNNKDRPAGPNGAGRSRVRREAQKREK*
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mRNA from alignment at chr11:418772..422033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01160.2 ID=NO11G01160.2|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3262bp|location=Sequence derived from alignment at chr11:418772..422033+ (Nannochloropsis oceanica)
TCTCGCCGTCATGATGCATCGCCGCGTGCCTTATCTTGTCCTCTCACCTC TGGCTTGTCCATGTCTCCCACAAAACACAACACCAACTTGATCGGGAATG GCAAAAAATACAGCACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCG GTCTTGTCGGGTCGTTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTG ACATTGCACCATCTTAATCTAGACCTGAACCAAAACAACGACAAGCCAAG CACACGTCCAAACCAATGACTGTCAACCACGACGTGCTGTGGGAGCTCCA GCGCCAGTACGCACGTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCAT CCCCACTTAAGCAACTCATTCGTTCCACTCATGCACACGAACACAGGCGG AGAGACGGAGACGAAGACGATGGCCTCAACGAGCAGCAGCACGACTGGCA TTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATG AGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAA GTTAGTAACAAGTCTCTCCCTTTGCATCCTAAATTTGTTTCCTTTTCCTC ATTCAAGAGCATCAAATATTCACCATCAAACAGTCAATGCACTTCTCATT TTCTAACCGTGCTCATTCTACATTTTGAAGGTTCATTTTAGCATACTATC CCGTCATGTCCAAAAGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGAT TCCTCCTTCTCTCATACTAACATAGCGGAAGGTACGTCGTAGACTCGACT TTAGCAAAGAAGGGGAATAGGAGTAGGAGAGTAAAGGATCAGGAAGATAG ATTTGTTTTGACGTCTTTTCGTTTTTGCTCAGGCTGATGACTTGTCTGCT AACATGCCTGTCGTCTCTGATACTTCTTTTCTCTTACTGATACTTTCCCC CTTTTGTGTATTTTACCCCATTTTCTCTGCAACTTGTGAAAATTTCTCCT GTCACCTTCCCTTTCTCTTATCCCCATCAAAACCTCTACTCTCAAGTCAC CGAGGGCCAAGACAACAAACCCGCCTACGGCCTCGACCAAATCCGGGCCC GCATCGATGCTCTGGATCTGGGCGGGGCCGTCGTAGACATTACGAGTGTG GACGTGCAGTCCTCAAAAGACGGCGCTGTCCTCATCCTCGTCCAAGGCGT CATGACCCGGCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCT TCCTGGCCCAGCAGGAGAACAACGAGACGCATTACTATCTGCTCAACGAC GTGTTCCGTACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCC TACCCCACCAGCAGCCATCTCCTTATCATCCTCTATTGTCAAAACGGCCG CTGGGGCCGCGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTC GTTCAAGAGGAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGG AGCGGAAGGAGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACAT TGCAGAGAAAGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATA AGGGAGGAAGCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGA GGAGAGAGGCCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTT CTACTGGCGATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTG CTAGTGGGGGAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGG GGTGGAGAAGGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGC AAAAGGATGACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCT CCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGC TCCTTTATCCGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGG GCGAGGAAGAGGAGCATAGAGAAGTGAAGATCAGCGGCAGTAGCAGCAGC AGCAGGTCGGGCGGAGTACGGGGTAGAGGCAGGGGCGACAGTCCAGCACA CAGCCGTGGTGGGTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCG GAGCAGGAGGTAGAGAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGC GTTGGTGCTGGTGCTGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGC GGTGTACGTGAAATGTAAAGCGGCTGAAGGGGCAGAACTGGGGACACACC AAGACGAGCTGTGTGCCTTGTTGCTGGGGATGGCGGTCGAGGGGGACTCG GTGCTGAGCTATAAGGTGAATAAGAGCCAGTTTTCCGTGTTCGTGGAGTT CGAGAAGCCAGAGTCAGTTGCGCGAATCATGGCGGCGTCGAGGGCGGAGC CGAAGCGATTTTTCTTAGTGAATAGCGTGCAGGGGAGGAGCAGGTTTAAT CTGTATCTGGACGTGAAGCGGCCGCCGGGACAGCCGGGCGTGAGCCATGT GATGGGAAGCAGGGAGGGAGGGTTTAGGGTTGTGGGGGGAGCGGGACAGG ATCACGGAGACCAACAGGGAGGGGTCGGAAGAAGAGGAGGAGGAGGAGGG ATGGGCGGAAGAGGGGGAGGAGAAAAGGGGGGATATCAGTACAGCAGCGG CAGCAGCAGCAACATCACGACTAACACCACCACAAGCAACAATAAGGATC GGCCAGCAGGGCCGAATGGCGCGGGGCGGAGCCGTGTCCGCCGGGAGGCA CAAAAGCGAGAAAAGTAATTTAAAGTAGAATGAAGTTACCGCTTTGACTG AAGAAGTGAAACGATTGAAGTGTGGCAGAGTAAGTGTGTAAGGAGCTGGG TGTTCAGAAATGCGTATATATATATGTGCCTCTGCCTCCTGCTGGAAGGA GAAGGAGTAGGATATATTATAGGGTAGAAGAGAAGGAAAAGAGACAAGTT GAATGTGTGTGATTCGGAACCTGTGAGCGTGTGCGAAGAAGCGAGAGGAT GGCACAAGGGTAGAAAAAAAGGAAACAACAATATTGGACCGGTAACGTGT TGGGGAAGATAGAGTGTAAGCTGATCGGGGAGAAAGAGAGGTAACCATCC CAAAATGATCTCGACAGGATCACTCTATCGCGAAACAGAATGCATGACGC ATCACTCTTTACATGCACACATAGACACACATAGACACGCCAGTCCACAA AAGGTGAAAGGA
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Coding sequence (CDS) from alignment at chr11:418772..422033+

>NO11G01160.2 ID=NO11G01160.2|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr11:418772..422033+ (Nannochloropsis oceanica)
ATGACCCGGCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCTT
CCTGGCCCAGCAGGAGAACAACGAGACGCATTACTATCTGCTCAACGACG
TGTTCCGTACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCCT
ACCCCACCAGCAGCCATCTCCTTATCATCCTCTATTGTCAAAACGGCCGC
TGGGGCCGCGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTCG
TTCAAGAGGAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGGA
GCGGAAGGAGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACATT
GCAGAGAAAGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATAA
GGGAGGAAGCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGAG
GAGAGAGGCCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTTC
TACTGGCGATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTGC
TAGTGGGGGAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGGG
GTGGAGAAGGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGCA
AAAGGATGACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCTC
CTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGCT
CCTTTATCCGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGGG
CGAGGAAGAGGAGCATAGAGAAGTGAAGATCAGCGGCAGTAGCAGCAGCA
GCAGGTCGGGCGGAGTACGGGGTAGAGGCAGGGGCGACAGTCCAGCACAC
AGCCGTGGTGGGTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCGG
AGCAGGAGGTAGAGAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGCG
TTGGTGCTGGTGCTGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGCG
GTGTACGTGAAATGTAAAGCGGCTGAAGGGGCAGAACTGGGGACACACCA
AGACGAGCTGTGTGCCTTGTTGCTGGGGATGGCGGTCGAGGGGGACTCGG
TGCTGAGCTATAAGGTGAATAAGAGCCAGTTTTCCGTGTTCGTGGAGTTC
GAGAAGCCAGAGTCAGTTGCGCGAATCATGGCGGCGTCGAGGGCGGAGCC
GAAGCGATTTTTCTTAGTGAATAGCGTGCAGGGGAGGAGCAGGTTTAATC
TGTATCTGGACGTGAAGCGGCCGCCGGGACAGCCGGGCGTGAGCCATGTG
ATGGGAAGCAGGGAGGGAGGGTTTAGGGTTGTGGGGGGAGCGGGACAGGA
TCACGGAGACCAACAGGGAGGGGTCGGAAGAAGAGGAGGAGGAGGAGGGA
TGGGCGGAAGAGGGGGAGGAGAAAAGGGGGGATATCAGTACAGCAGCGGC
AGCAGCAGCAACATCACGACTAACACCACCACAAGCAACAATAAGGATCG
GCCAGCAGGGCCGAATGGCGCGGGGCGGAGCCGTGTCCGCCGGGAGGCAC
AAAAGCGAGAAAAGTAA
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Synonyms
Publications