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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:418772..422033 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01160.2 vs.
Match: EWM25128.1 (ran protein binding protein [Nannochloropsis gaditana]) HSP 1 Score: 94.7 bits (234), Expect = 9.100e-16 Identity = 89/219 (40.64%), Postives = 111/219 (50.68%), Query Frame = 0
Query: 318 AGGREGGQVYVHGSAGVGAGAAGGVGLDE-PPTAVYVKCKAAEGAELGTHQDELCALLLGMAVEGDSVLSYKVNKSQFSVFVEFEKPESVARIMAASRAEPKRFFLVNSVQGRSRFNLYLDVKRPPGQPGVSHVMGSREGGFRVVGGAGQDHGDQQGGVGRRGGGGGMGGRGGGEKGGYQYSSGSSSNITTNTTTSNNKDRPAGPNGAGRSRVRREAQK 536
A +EG A G G VG+ E T + +A EGAELG H+ EL ALL+G+ G V Y+VNKSQ+SVFVE ESVAR+M RA+PKRF L + + L+LDVKRPPGQ G HG G GRRGG G G GGGE+G + +S + + K RP GP+GAGR R R + +K
Sbjct: 199 AAEKEGAMAIARVQAEAMRGQEG-VGVQERKETKEEEEEEAEEGAELGMHEAELTALLVGVGGAGTVVRDYRVNKSQYSVFVELGDAESVARVMGVVRADPKRFHLRD-----GQIPLFLDVKRPPGQLG--------------------PHG---GASGRRGGIG--RGLGGGERGSLLNNGSNSRGGGNENSEHSKKGRPLGPDGAGRGRRREKGEK 386
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01160.2 ID=NO11G01160.2|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp TCTCGCCGTCATGATGCATCGCCGCGTGCCTTATCTTGTCCTCTCACCTC TGGCTTGTCCATGTCTCCCACAAAACACAACACCAACTTGATCGGGAATG GCAAAAAATACAGCACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCG GTCTTGTCGGGTCGTTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTG ACATTGCACCATCTTAATCTAGACCTGAACCAAAACAACGACAAGCCAAG CACACGTCCAAACCAATGACTGTCAACCACGACGTGCTGTGGGAGCTCCA GCGCCAGTACGCACGTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCAT CCCCACTTAAGCAACTCATTCGTTCCACTCATGCACACGAACACAGGCGG AGAGACGGAGACGAAGACGATGGCCTCAACGAGCAGCAGCACGACTGGCA TTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATG AGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAA GTTCATTTTAGCATACTATCCCGTCATGTCCAAAAGTGCGGAGGAGCTCA TCAAGTTCTACAAGGAGGATTCCTCCTTCTCTCATACTAACATAGCGGAA GGTACGTCGTAGACTCGACTTTAGCAAAGAAGGGGAATAGGAGTAGGAGA GTAAAGGATCAGGAAGATAGATTTGTTTTGACGTCTTTTCGTTTTTGCTC AGGCTGATGACTTGTCTGCTAACATGCCTGTCGTCTCTGATACTTCTTTT CTCTTACTGATACTTTCCCCCTTTTGTGTATTTTACCCCATTTTCTCTGC AACTTGTGAAAATTTCTCCTGTCACCTTCCCTTTCTCTTATCCCCATCAA AACCTCTACTCTCAAGTCACCGAGGGCCAAGACAACAAACCCGCCTACGG CCTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGGGGCCG TCGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCGCTGTC CTCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCGCCTCG TGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGAGACGC ATTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGCCTGTG ACCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTATCATC CTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTCCCCCA AATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAAGGAAG GAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTGCAGGA GCAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGAAGGAG CATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGAAGGAT AAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCTTCATC TTTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCCTGTGG CTACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGCCTCAG CAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTGGTGGA GCATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGAAAGTG GCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTGCTGCT GCTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGCTGGAG CGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGAGCATAGAGAAGTGAAGA TCAGCGGCAGTAGCAGCAGCAGCAGGTCGGGCGGAGTACGGGGTAGAGGC AGGGGCGACAGTCCAGCACACAGCCGTGGTGGGTCCTCTTCTCCCTCGAA AAAGGGACGCAGGGAAGGCGGAGCAGGAGGTAGAGAAGGTGGGCAAGTAT ACGTGCATGGGTCAGCCGGCGTTGGTGCTGGTGCTGCTGGTGGTGTGGGT TTGGACGAGCCACCGACTGCGGTGTACGTGAAATGTAAAGCGGCTGAAGG GGCAGAACTGGGGACACACCAAGACGAGCTGTGTGCCTTGTTGCTGGGGA TGGCGGTCGAGGGGGACTCGGTGCTGAGCTATAAGGTGAATAAGAGCCAG TTTTCCGTGTTCGTGGAGTTCGAGAAGCCAGAGTCAGTTGCGCGAATCAT GGCGGCGTCGAGGGCGGAGCCGAAGCGATTTTTCTTAGTGAATAGCGTGC AGGGGAGGAGCAGGTTTAATCTGTATCTGGACGTGAAGCGGCCGCCGGGA CAGCCGGGCGTGAGCCATGTGATGGGAAGCAGGGAGGGAGGGTTTAGGGT TGTGGGGGGAGCGGGACAGGATCACGGAGACCAACAGGGAGGGGTCGGAA GAAGAGGAGGAGGAGGAGGGATGGGCGGAAGAGGGGGAGGAGAAAAGGGG GGATATCAGTACAGCAGCGGCAGCAGCAGCAACATCACGACTAACACCAC CACAAGCAACAATAAGGATCGGCCAGCAGGGCCGAATGGCGCGGGGCGGA GCCGTGTCCGCCGGGAGGCACAAAAGCGAGAAAAGTAATTTAAAGTAGAA TGAAGTTACCGCTTTGACTGAAGAAGTGAAACGATTGAAGTGTGGCAGAG TAAGTGTGTAAGGAGCTGGGTGTTCAGAAATGCGTATATATATATGTGCC TCTGCCTCCTGCTGGAAGGAGAAGGAGTAGGATATATTATAGGGTAGAAG AGAAGGAAAAGAGACAAGTTGAATGTGTGTGATTCGGAACCTGTGAGCGT GTGCGAAGAAGCGAGAGGATGGCACAAGGGTAGAAAAAAAGGAAACAACA ATATTGGACCGGTAACGTGTTGGGGAAGATAGAGTGTAAGCTGATCGGGG AGAAAGAGAGGTAACCATCCCAAAATGATCTCGACAGGATCACTCTATCG CGAAACAGAATGCATGACGCATCACTCTTTACATGCACACATAGACACAC ATAGACACGCCAGTCCACAAAAGGTGAAAGGA back to topprotein sequence of NO11G01160.2 >NO11G01160.2-protein ID=NO11G01160.2-protein|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp MTRRGGKPPRAFVQTFFLAQQENNETHYYLLNDVFRTLEEPPVTTRSPTP TPPAAISLSSSIVKTAAGAASVSLSPKCETVAVVQEEGDKERKEGGQDMG AEGEEQQLQEQQQQQTLQRKIEEGEGALAMNGIREEAQGKKKDKKKKAVE ERGLSPEASSFTTSSSSTGDPPLVPVATHTPPLLVGEAAPPPQQQQQPQG VEKEKGNVVEHKHQKQQKDDSGRRESGPSAAAAPAAPAAAPAAAPAHTLA PLSGPPPSWSAIVGKKGEEEEHREVKISGSSSSSRSGGVRGRGRGDSPAH SRGGSSSPSKKGRREGGAGGREGGQVYVHGSAGVGAGAAGGVGLDEPPTA VYVKCKAAEGAELGTHQDELCALLLGMAVEGDSVLSYKVNKSQFSVFVEF EKPESVARIMAASRAEPKRFFLVNSVQGRSRFNLYLDVKRPPGQPGVSHV MGSREGGFRVVGGAGQDHGDQQGGVGRRGGGGGMGGRGGGEKGGYQYSSG SSSNITTNTTTSNNKDRPAGPNGAGRSRVRREAQKREK* back to topmRNA from alignment at chr11:418772..422033+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01160.2 ID=NO11G01160.2|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3262bp|location=Sequence derived from alignment at chr11:418772..422033+ (Nannochloropsis oceanica) TCTCGCCGTCATGATGCATCGCCGCGTGCCTTATCTTGTCCTCTCACCTC
TGGCTTGTCCATGTCTCCCACAAAACACAACACCAACTTGATCGGGAATG
GCAAAAAATACAGCACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCG
GTCTTGTCGGGTCGTTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTG
ACATTGCACCATCTTAATCTAGACCTGAACCAAAACAACGACAAGCCAAG
CACACGTCCAAACCAATGACTGTCAACCACGACGTGCTGTGGGAGCTCCA
GCGCCAGTACGCACGTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCAT
CCCCACTTAAGCAACTCATTCGTTCCACTCATGCACACGAACACAGGCGG
AGAGACGGAGACGAAGACGATGGCCTCAACGAGCAGCAGCACGACTGGCA
TTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATG
AGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAA
GTTAGTAACAAGTCTCTCCCTTTGCATCCTAAATTTGTTTCCTTTTCCTC
ATTCAAGAGCATCAAATATTCACCATCAAACAGTCAATGCACTTCTCATT
TTCTAACCGTGCTCATTCTACATTTTGAAGGTTCATTTTAGCATACTATC
CCGTCATGTCCAAAAGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGAT
TCCTCCTTCTCTCATACTAACATAGCGGAAGGTACGTCGTAGACTCGACT
TTAGCAAAGAAGGGGAATAGGAGTAGGAGAGTAAAGGATCAGGAAGATAG
ATTTGTTTTGACGTCTTTTCGTTTTTGCTCAGGCTGATGACTTGTCTGCT
AACATGCCTGTCGTCTCTGATACTTCTTTTCTCTTACTGATACTTTCCCC
CTTTTGTGTATTTTACCCCATTTTCTCTGCAACTTGTGAAAATTTCTCCT
GTCACCTTCCCTTTCTCTTATCCCCATCAAAACCTCTACTCTCAAGTCAC
CGAGGGCCAAGACAACAAACCCGCCTACGGCCTCGACCAAATCCGGGCCC
GCATCGATGCTCTGGATCTGGGCGGGGCCGTCGTAGACATTACGAGTGTG
GACGTGCAGTCCTCAAAAGACGGCGCTGTCCTCATCCTCGTCCAAGGCGT
CATGACCCGGCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCT
TCCTGGCCCAGCAGGAGAACAACGAGACGCATTACTATCTGCTCAACGAC
GTGTTCCGTACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCC
TACCCCACCAGCAGCCATCTCCTTATCATCCTCTATTGTCAAAACGGCCG
CTGGGGCCGCGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTC
GTTCAAGAGGAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGG
AGCGGAAGGAGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACAT
TGCAGAGAAAGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATA
AGGGAGGAAGCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGA
GGAGAGAGGCCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTT
CTACTGGCGATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTG
CTAGTGGGGGAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGG
GGTGGAGAAGGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGC
AAAAGGATGACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCT
CCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGC
TCCTTTATCCGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGG
GCGAGGAAGAGGAGCATAGAGAAGTGAAGATCAGCGGCAGTAGCAGCAGC
AGCAGGTCGGGCGGAGTACGGGGTAGAGGCAGGGGCGACAGTCCAGCACA
CAGCCGTGGTGGGTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCG
GAGCAGGAGGTAGAGAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGC
GTTGGTGCTGGTGCTGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGC
GGTGTACGTGAAATGTAAAGCGGCTGAAGGGGCAGAACTGGGGACACACC
AAGACGAGCTGTGTGCCTTGTTGCTGGGGATGGCGGTCGAGGGGGACTCG
GTGCTGAGCTATAAGGTGAATAAGAGCCAGTTTTCCGTGTTCGTGGAGTT
CGAGAAGCCAGAGTCAGTTGCGCGAATCATGGCGGCGTCGAGGGCGGAGC
CGAAGCGATTTTTCTTAGTGAATAGCGTGCAGGGGAGGAGCAGGTTTAAT
CTGTATCTGGACGTGAAGCGGCCGCCGGGACAGCCGGGCGTGAGCCATGT
GATGGGAAGCAGGGAGGGAGGGTTTAGGGTTGTGGGGGGAGCGGGACAGG
ATCACGGAGACCAACAGGGAGGGGTCGGAAGAAGAGGAGGAGGAGGAGGG
ATGGGCGGAAGAGGGGGAGGAGAAAAGGGGGGATATCAGTACAGCAGCGG
CAGCAGCAGCAACATCACGACTAACACCACCACAAGCAACAATAAGGATC
GGCCAGCAGGGCCGAATGGCGCGGGGCGGAGCCGTGTCCGCCGGGAGGCA
CAAAAGCGAGAAAAGTAATTTAAAGTAGAATGAAGTTACCGCTTTGACTG
AAGAAGTGAAACGATTGAAGTGTGGCAGAGTAAGTGTGTAAGGAGCTGGG
TGTTCAGAAATGCGTATATATATATGTGCCTCTGCCTCCTGCTGGAAGGA
GAAGGAGTAGGATATATTATAGGGTAGAAGAGAAGGAAAAGAGACAAGTT
GAATGTGTGTGATTCGGAACCTGTGAGCGTGTGCGAAGAAGCGAGAGGAT
GGCACAAGGGTAGAAAAAAAGGAAACAACAATATTGGACCGGTAACGTGT
TGGGGAAGATAGAGTGTAAGCTGATCGGGGAGAAAGAGAGGTAACCATCC
CAAAATGATCTCGACAGGATCACTCTATCGCGAAACAGAATGCATGACGC
ATCACTCTTTACATGCACACATAGACACACATAGACACGCCAGTCCACAA
AAGGTGAAAGGA back to topCoding sequence (CDS) from alignment at chr11:418772..422033+ >NO11G01160.2 ID=NO11G01160.2|Name=NO11G01160.2|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr11:418772..422033+ (Nannochloropsis oceanica) ATGACCCGGCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCTT CCTGGCCCAGCAGGAGAACAACGAGACGCATTACTATCTGCTCAACGACG TGTTCCGTACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCCT ACCCCACCAGCAGCCATCTCCTTATCATCCTCTATTGTCAAAACGGCCGC TGGGGCCGCGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTCG TTCAAGAGGAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGGA GCGGAAGGAGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACATT GCAGAGAAAGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATAA GGGAGGAAGCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGAG GAGAGAGGCCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTTC TACTGGCGATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTGC TAGTGGGGGAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGGG GTGGAGAAGGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGCA AAAGGATGACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCTC CTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGCT CCTTTATCCGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGGG CGAGGAAGAGGAGCATAGAGAAGTGAAGATCAGCGGCAGTAGCAGCAGCA GCAGGTCGGGCGGAGTACGGGGTAGAGGCAGGGGCGACAGTCCAGCACAC AGCCGTGGTGGGTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCGG AGCAGGAGGTAGAGAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGCG TTGGTGCTGGTGCTGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGCG GTGTACGTGAAATGTAAAGCGGCTGAAGGGGCAGAACTGGGGACACACCA AGACGAGCTGTGTGCCTTGTTGCTGGGGATGGCGGTCGAGGGGGACTCGG TGCTGAGCTATAAGGTGAATAAGAGCCAGTTTTCCGTGTTCGTGGAGTTC GAGAAGCCAGAGTCAGTTGCGCGAATCATGGCGGCGTCGAGGGCGGAGCC GAAGCGATTTTTCTTAGTGAATAGCGTGCAGGGGAGGAGCAGGTTTAATC TGTATCTGGACGTGAAGCGGCCGCCGGGACAGCCGGGCGTGAGCCATGTG ATGGGAAGCAGGGAGGGAGGGTTTAGGGTTGTGGGGGGAGCGGGACAGGA TCACGGAGACCAACAGGGAGGGGTCGGAAGAAGAGGAGGAGGAGGAGGGA TGGGCGGAAGAGGGGGAGGAGAAAAGGGGGGATATCAGTACAGCAGCGGC AGCAGCAGCAACATCACGACTAACACCACCACAAGCAACAATAAGGATCG GCCAGCAGGGCCGAATGGCGCGGGGCGGAGCCGTGTCCGCCGGGAGGCAC AAAAGCGAGAAAAGTAA back to top
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