NO11G01090.1, NO11G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01090.1
Unique NameNO11G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1012
Alignment locationchr11:403568..404579 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:403568..404579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01090.1 vs.
Match: OQR96956.1 (plectin-like protein [Achlya hypogyna])

HSP 1 Score: 74.3 bits (181), Expect = 6.600e-10
Identity = 78/263 (29.66%), Postives = 123/263 (46.77%), Query Frame = 0 
Query:   18 TLLEEMMMAATITTGSRLLPPPKSTKADNASFGSSLKAGFLTKSSSRDA-QYHNSSSSGSSSSSSSSNSSSSSDNNTQIAVS-MSSPSSASAELLAEKILSSPLLRKALENPRFQVIFTDLGSDPQATLVRYQHDNAAMGFLRGLMGALGEHFEELGKQQQQQSGQNKTNAACPLMQAALEKADKQKIQPVNDLEQDKAEQEAVNRILRDPELRNLLLDPTMQTVLQSFSESDKNRGSVLHKYIPYPIIAAKLGKLADAGLIQ 279
            ++++EM+ AA      +        +    SFG  LK GF + +    A +   + +    +  + S  SS      Q A+  + S    + E L +K+   P L  AL+NPRF     ++ S+P+  + +YQ+D      L+  M  +G HFE+LGK  + +  Q +        + ALE A            Q   EQ  V RIL DPEL+ +L DP MQ VL++  E       VL +++  P++ AK+ KL  AGL+Q
Sbjct:   18 SVMDEMLAAAMHAKAQKAAIKAADDQKRAVSFGQGLKKGFFSAAPRTKATKTPKAKADDIPTIRAKSTRSSLEIPEVQSAMQGLQSKDWMTPEFL-DKLSKDPKLCTALQNPRFTAAIQEMSSNPEKAVAKYQNDPGVAAMLKDFMQFMGAHFEQLGKDMEAKELQAR-------QRQALESA-----------AQTPEEQAQVQRILSDPELQAILSDPAMQAVLRACQEP-----GVLLRHLADPVVGAKIRKLQAAGLVQ 256
The following BLAST results are available for this feature:
BLAST of NO11G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR96956.16.600e-1029.66plectin-like protein [Achlya hypogyna][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01090NO11G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01090.1NO11G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01090.1.cds1NO11G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01090.1 ID=NO11G01090.1|Name=NO11G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp
CACCCATACACAAAAGTATGCATTCAATTGCACAGAAATGTATTGAGACT
GACGACAGCAGCGCTCTTACGCTCCTGGAAGAAATGATGATGGCGGCCAC
CATCACCACGGGGTCTAGGCTATTACCACCCCCTAAGTCCACAAAAGCTG
ACAATGCCTCTTTTGGTAGCAGTTTAAAGGCGGGCTTCCTCACCAAGTCT
TCCTCGCGAGATGCACAGTATCATAACAGCAGTAGTAGCGGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCGACAACAACACCCAAA
TCGCTGTTTCCATGTCCTCGCCCTCGTCTGCATCAGCAGAGTTATTGGCT
GAGAAGATCTTGTCTTCCCCTTTGCTTCGAAAGGCCCTCGAGAATCCTCG
CTTCCAAGTCATTTTTACCGACCTCGGCTCCGACCCGCAAGCTACCCTTG
TCCGCTATCAGCATGACAACGCCGCCATGGGTTTCCTGAGAGGGCTCATG
GGGGCTTTAGGCGAGCATTTTGAAGAGTTGGGAAAGCAGCAGCAGCAGCA
GTCAGGCCAGAACAAGACCAACGCCGCATGTCCCTTGATGCAGGCAGCTC
TCGAGAAGGCAGATAAGCAGAAAATTCAGCCGGTGAATGATCTCGAACAA
GACAAGGCAGAGCAAGAGGCCGTCAATCGCATTTTGCGTGACCCAGAGCT
GCGGAACCTTCTTCTCGATCCAACGATGCAGACGGTACTTCAAAGCTTTT
CAGAGAGCGATAAGAATAGGGGCTCGGTGTTACACAAGTACATTCCATAC
CCGATCATCGCCGCCAAGCTGGGTAAGCTTGCTGATGCGGGCCTTATTCA
GACTAAATGATAACATGCGAAGTGACAGGAAGATAGCTCTGAATGTAGGC
GACAGAGGCACTGTAAGCGCAATCTTTTGTGGAAGCAATAAATTGCTTTT
AACACAGTTACCAGCACCTAACCGAGACAATCCTGTTAAAAAGAATGTCG
CCTCGCTTCCCC
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protein sequence of NO11G01090.1

>NO11G01090.1-protein ID=NO11G01090.1-protein|Name=NO11G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MHSIAQKCIETDDSSALTLLEEMMMAATITTGSRLLPPPKSTKADNASFG
SSLKAGFLTKSSSRDAQYHNSSSSGSSSSSSSSNSSSSSDNNTQIAVSMS
SPSSASAELLAEKILSSPLLRKALENPRFQVIFTDLGSDPQATLVRYQHD
NAAMGFLRGLMGALGEHFEELGKQQQQQSGQNKTNAACPLMQAALEKADK
QKIQPVNDLEQDKAEQEAVNRILRDPELRNLLLDPTMQTVLQSFSESDKN
RGSVLHKYIPYPIIAAKLGKLADAGLIQTK*
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mRNA from alignment at chr11:403568..404579+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01090.1 ID=NO11G01090.1|Name=NO11G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at chr11:403568..404579+ (Nannochloropsis oceanica)
CACCCATACACAAAAGTATGCATTCAATTGCACAGAAATGTATTGAGACT
GACGACAGCAGCGCTCTTACGCTCCTGGAAGAAATGATGATGGCGGCCAC
CATCACCACGGGGTCTAGGCTATTACCACCCCCTAAGTCCACAAAAGCTG
ACAATGCCTCTTTTGGTAGCAGTTTAAAGGCGGGCTTCCTCACCAAGTCT
TCCTCGCGAGATGCACAGTATCATAACAGCAGTAGTAGCGGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCGACAACAACACCCAAA
TCGCTGTTTCCATGTCCTCGCCCTCGTCTGCATCAGCAGAGTTATTGGCT
GAGAAGATCTTGTCTTCCCCTTTGCTTCGAAAGGCCCTCGAGAATCCTCG
CTTCCAAGTCATTTTTACCGACCTCGGCTCCGACCCGCAAGCTACCCTTG
TCCGCTATCAGCATGACAACGCCGCCATGGGTTTCCTGAGAGGGCTCATG
GGGGCTTTAGGCGAGCATTTTGAAGAGTTGGGAAAGCAGCAGCAGCAGCA
GTCAGGCCAGAACAAGACCAACGCCGCATGTCCCTTGATGCAGGCAGCTC
TCGAGAAGGCAGATAAGCAGAAAATTCAGCCGGTGAATGATCTCGAACAA
GACAAGGCAGAGCAAGAGGCCGTCAATCGCATTTTGCGTGACCCAGAGCT
GCGGAACCTTCTTCTCGATCCAACGATGCAGACGGTACTTCAAAGCTTTT
CAGAGAGCGATAAGAATAGGGGCTCGGTGTTACACAAGTACATTCCATAC
CCGATCATCGCCGCCAAGCTGGGTAAGCTTGCTGATGCGGGCCTTATTCA
GACTAAATGATAACATGCGAAGTGACAGGAAGATAGCTCTGAATGTAGGC
GACAGAGGCACTGTAAGCGCAATCTTTTGTGGAAGCAATAAATTGCTTTT
AACACAGTTACCAGCACCTAACCGAGACAATCCTGTTAAAAAGAATGTCG
CCTCGCTTCCCC
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Coding sequence (CDS) from alignment at chr11:403568..404579+

>NO11G01090.1 ID=NO11G01090.1|Name=NO11G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr11:403568..404579+ (Nannochloropsis oceanica)
ATGCATTCAATTGCACAGAAATGTATTGAGACTGACGACAGCAGCGCTCT
TACGCTCCTGGAAGAAATGATGATGGCGGCCACCATCACCACGGGGTCTA
GGCTATTACCACCCCCTAAGTCCACAAAAGCTGACAATGCCTCTTTTGGT
AGCAGTTTAAAGGCGGGCTTCCTCACCAAGTCTTCCTCGCGAGATGCACA
GTATCATAACAGCAGTAGTAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAGCAGCAGCAGCGACAACAACACCCAAATCGCTGTTTCCATGTCC
TCGCCCTCGTCTGCATCAGCAGAGTTATTGGCTGAGAAGATCTTGTCTTC
CCCTTTGCTTCGAAAGGCCCTCGAGAATCCTCGCTTCCAAGTCATTTTTA
CCGACCTCGGCTCCGACCCGCAAGCTACCCTTGTCCGCTATCAGCATGAC
AACGCCGCCATGGGTTTCCTGAGAGGGCTCATGGGGGCTTTAGGCGAGCA
TTTTGAAGAGTTGGGAAAGCAGCAGCAGCAGCAGTCAGGCCAGAACAAGA
CCAACGCCGCATGTCCCTTGATGCAGGCAGCTCTCGAGAAGGCAGATAAG
CAGAAAATTCAGCCGGTGAATGATCTCGAACAAGACAAGGCAGAGCAAGA
GGCCGTCAATCGCATTTTGCGTGACCCAGAGCTGCGGAACCTTCTTCTCG
ATCCAACGATGCAGACGGTACTTCAAAGCTTTTCAGAGAGCGATAAGAAT
AGGGGCTCGGTGTTACACAAGTACATTCCATACCCGATCATCGCCGCCAA
GCTGGGTAAGCTTGCTGATGCGGGCCTTATTCAGACTAAATGA
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Synonyms
Publications