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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:359371..361165 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00930.1 vs.
Match: XP_005856297.1 (hypothetical protein NGA_2103000, partial [Nannochloropsis gaditana CCMP526]; EKU20077.1 hypothetical protein NGA_2103000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 890.2 bits (2299), Expect = 3.200e-255 Identity = 440/524 (83.97%), Postives = 472/524 (90.08%), Query Frame = 0
Query: 1 MGPAKVQIKWNKQTFTDVPLDITQPALAFKQHVSELTGVPVERQKLMGKGLWKLALKDDEDLSKLIVKDGAVVMLVGTADVVKEPAEKVVFVEDMAQADQAKSGAILPAGLRNLGNTCYLNSTLQCLRYVPELRQALNLFTGTGTNQQPFLTNALKDTLNLLDGTTEPVPPMQFVMLLRQQFPQFAQQSRGHFMQQDADEFLNELLTSLAANLREAYVLPTLEDAGNFVDALLGMEVEDTLTCAETEAEPAVLKRDQVRKLVCNIQGGAGSDVKINYLHEGVKLALEGTIEKQSAVLGRNAVWNKTTRISRLPRYLCVQFMRFFWKATPDSQDHAGVKCKSLRTVTFPETLDMFDFCNKTLQDRLMITREKEVDEILGKGLDK--EDMGDESKDIAVADAGVADVEDEEEKAALRAALAMSMAESANAVVSPTPCGPGLPLDFKGIYELFGVVTHKGRTADGGHYMGWVRQKGDNWLVFDDEDVSECKTSEVLQLSGGGDWHMAYLCFYRYKGTGGVEDEKASA 523
M P KVQIKWNKQTF++VPLD T AL FKQHV ELTGVPV RQKLM KG WKLALKDD+DLSKL +KDGA V L+GTADVVKEP EKVVFVEDMAQADQAK+GAILPAGLRNLGNTCYLNSTLQCLRYVPELRQALN +TGTG N+QPFLTNALKDT NLLDG TEPVPPMQFVMLLRQQFPQFAQQSRGHFMQQDADEF+NELLTSLAANLR+AY LP+LEDAGNFVDAL GMEVEDTL+CAE+EAE V+KRD VRKLVCNIQGGAGSDVKINYLHEGVKLALEGTIEKQS VLGR+AVWNKTTRI+RLPRYLCVQFMRFFWKATPDSQDHAGVKCKSLRTVTFPETLDMFDFCNKTLQDRLMITR +EVD+ILGK K + +G + D + EE+AAL+AALAMSMA+SA+A V P PCGPGLP+DFKG+YELFGVVTHKGRTADGGHYMGWVRQKGD+WLVFDDEDVSECKT+EVLQLSGGGDWHMAYLCFYR+KGTGGV DEK S+
Sbjct: 13 MAPTKVQIKWNKQTFSEVPLDTTGTALTFKQHVYELTGVPVPRQKLMCKGAWKLALKDDDDLSKLSIKDGAAVTLIGTADVVKEPVEKVVFVEDMAQADQAKTGAILPAGLRNLGNTCYLNSTLQCLRYVPELRQALNRYTGTGANEQPFLTNALKDTFNLLDGNTEPVPPMQFVMLLRQQFPQFAQQSRGHFMQQDADEFMNELLTSLAANLRDAYGLPSLEDAGNFVDALFGMEVEDTLSCAESEAEKPVVKRDHVRKLVCNIQGGAGSDVKINYLHEGVKLALEGTIEKQSEVLGRDAVWNKTTRIARLPRYLCVQFMRFFWKATPDSQDHAGVKCKSLRTVTFPETLDMFDFCNKTLQDRLMITRGREVDDILGKDSKKKGDGLGGDGGDPEAKGEESSGNGSSEEEAALQAALAMSMADSADAAVPPAPCGPGLPMDFKGLYELFGVVTHKGRTADGGHYMGWVRQKGDDWLVFDDEDVSECKTAEVLQLSGGGDWHMAYLCFYRFKGTGGVADEKGSS 536
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00930.1 ID=NO11G00930.1|Name=NO11G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
CACAACCAGTACTCCAAGCCCCTACAGTCAAACACGCACAATGGGGCCTG
CCAAGGTACAGATTAAGTGGAACAAACAGACTTTTACGGATGTCCCATTG
GACATCACTCAGCCCGCCTTGGCTTTCAAACAGCATGTCTCCGAGCTGAC
AGGCGTGCCCGTGGAGCGGCAAAAGCTCATGGGAAAGGGTTTGTGGAAGC
TAGCCCTCAAAGATGACGAGGACCTTTCCAAGCTCATCGTCAAGGACGGA
GCGGTAGTTATGCTGGTGGGAACGGCAGACGTGGTCAAAGAACCCGCGGA
GAAGGTAGTTTTTGTGGAGGACATGGCACAGGCCGATCAGGCCAAGTCTG
GTGCAATTCTCCCCGCGGGCCTGCGCAATCTCGGCAACACTTGCTATCTC
AACTCTACACTGCAGTGCTTGCGATACGTGCCGGAGCTCCGACAAGCTCT
GAACCTGTTCACGGGCACGGGCACCAACCAACAACCCTTCTTGACGAACG
CCCTCAAGGACACGCTCAACCTGCTGGACGGTACTACCGAGCCCGTACCG
CCGATGCAGTTCGTCATGCTTCTGCGCCAGCAATTTCCGCAATTCGCCCA
GCAATCTCGGGGCCACTTTATGCAGCAGGATGCGGATGAGTTTTTGAATG
AGCTGCTAACCTCGCTGGCCGCTAATCTGCGCGAGGCGTACGTGCTGCCC
ACGCTGGAGGACGCGGGAAACTTCGTGGACGCTCTGCTGGGCATGGAGGT
GGAGGACACCCTGACCTGTGCTGAGACGGAGGCAGAGCCGGCTGTGCTTA
AACGCGACCAAGTGCGTAAGCTGGTGTGCAACATTCAGGGCGGTGCGGGC
AGCGACGTGAAGATAAACTACCTGCATGAGGGCGTCAAGCTAGCGCTGGA
GGGCACCATCGAGAAGCAGAGCGCGGTGCTGGGCCGGAACGCGGTCTGGA
ACAAGACAACGCGCATTTCACGCTTGCCCCGCTACCTGTGCGTACAGTTT
ATGCGCTTCTTCTGGAAGGCTACTCCGGACAGCCAGGACCACGCCGGTGT
CAAATGCAAGTCCCTTCGCACCGTTACCTTTCCCGAGACCCTGGACATGT
TCGACTTCTGCAACAAGACGCTGCAGGATCGGCTTATGATCACGCGTGAG
AAGGAAGTAGACGAAATCTTGGGTAAGGGTCTGGATAAGGAGGACATGGG
CGATGAAAGCAAGGACATTGCCGTGGCCGACGCTGGGGTTGCCGACGTTG
AGGACGAGGAGGAGAAGGCCGCGCTGCGAGCGGCGCTAGCCATGTCCATG
GCGGAGTCGGCGAACGCGGTTGTGTCTCCTACACCGTGCGGACCCGGACT
GCCTCTGGATTTCAAGGGCATTTACGAGCTATTCGGCGTGGTGACGCACA
AGGGTCGGACAGCAGACGGCGGACACTACATGGGCTGGGTCCGGCAGAAG
GGCGATAACTGGCTAGTCTTCGACGACGAGGACGTGTCGGAGTGCAAGAC
GTCTGAAGTACTACAGCTCTCAGGGGGCGGGGACTGGCATATGGCGTACC
TCTGCTTCTATCGCTACAAGGGCACAGGAGGTGTCGAAGACGAGAAGGCC
TCTGCGGCAGCGGCTGAGAAGTGAAACACTTGTAAGGGCGACGGAAGCTT
GGAGAGCGAAATATTCGAGAACTATGGCAGGAACTACAGTTTCAAAAGCA
GGCCGCTGTTTATGTAGGATACTTGAATGGAAAACGGCTGAAATAGGTCA
GGACCAGCACGCGAAGAGAAGGAAAGTTACGATAAACGAATGAGA back to topprotein sequence of NO11G00930.1 >NO11G00930.1-protein ID=NO11G00930.1-protein|Name=NO11G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MGPAKVQIKWNKQTFTDVPLDITQPALAFKQHVSELTGVPVERQKLMGKG
LWKLALKDDEDLSKLIVKDGAVVMLVGTADVVKEPAEKVVFVEDMAQADQ
AKSGAILPAGLRNLGNTCYLNSTLQCLRYVPELRQALNLFTGTGTNQQPF
LTNALKDTLNLLDGTTEPVPPMQFVMLLRQQFPQFAQQSRGHFMQQDADE
FLNELLTSLAANLREAYVLPTLEDAGNFVDALLGMEVEDTLTCAETEAEP
AVLKRDQVRKLVCNIQGGAGSDVKINYLHEGVKLALEGTIEKQSAVLGRN
AVWNKTTRISRLPRYLCVQFMRFFWKATPDSQDHAGVKCKSLRTVTFPET
LDMFDFCNKTLQDRLMITREKEVDEILGKGLDKEDMGDESKDIAVADAGV
ADVEDEEEKAALRAALAMSMAESANAVVSPTPCGPGLPLDFKGIYELFGV
VTHKGRTADGGHYMGWVRQKGDNWLVFDDEDVSECKTSEVLQLSGGGDWH
MAYLCFYRYKGTGGVEDEKASAAAAEK* back to topmRNA from alignment at chr11:359371..361165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00930.1 ID=NO11G00930.1|Name=NO11G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at chr11:359371..361165- (Nannochloropsis oceanica)
CACAACCAGTACTCCAAGCCCCTACAGTCAAACACGCACAATGGGGCCTG
CCAAGGTACAGATTAAGTGGAACAAACAGACTTTTACGGATGTCCCATTG
GACATCACTCAGCCCGCCTTGGCTTTCAAACAGCATGTCTCCGAGCTGAC
AGGCGTGCCCGTGGAGCGGCAAAAGCTCATGGGAAAGGGTTTGTGGAAGC
TAGCCCTCAAAGATGACGAGGACCTTTCCAAGCTCATCGTCAAGGACGGA
GCGGTAGTTATGCTGGTGGGAACGGCAGACGTGGTCAAAGAACCCGCGGA
GAAGGTAGTTTTTGTGGAGGACATGGCACAGGCCGATCAGGCCAAGTCTG
GTGCAATTCTCCCCGCGGGCCTGCGCAATCTCGGCAACACTTGCTATCTC
AACTCTACACTGCAGTGCTTGCGATACGTGCCGGAGCTCCGACAAGCTCT
GAACCTGTTCACGGGCACGGGCACCAACCAACAACCCTTCTTGACGAACG
CCCTCAAGGACACGCTCAACCTGCTGGACGGTACTACCGAGCCCGTACCG
CCGATGCAGTTCGTCATGCTTCTGCGCCAGCAATTTCCGCAATTCGCCCA
GCAATCTCGGGGCCACTTTATGCAGCAGGATGCGGATGAGTTTTTGAATG
AGCTGCTAACCTCGCTGGCCGCTAATCTGCGCGAGGCGTACGTGCTGCCC
ACGCTGGAGGACGCGGGAAACTTCGTGGACGCTCTGCTGGGCATGGAGGT
GGAGGACACCCTGACCTGTGCTGAGACGGAGGCAGAGCCGGCTGTGCTTA
AACGCGACCAAGTGCGTAAGCTGGTGTGCAACATTCAGGGCGGTGCGGGC
AGCGACGTGAAGATAAACTACCTGCATGAGGGCGTCAAGCTAGCGCTGGA
GGGCACCATCGAGAAGCAGAGCGCGGTGCTGGGCCGGAACGCGGTCTGGA
ACAAGACAACGCGCATTTCACGCTTGCCCCGCTACCTGTGCGTACAGTTT
ATGCGCTTCTTCTGGAAGGCTACTCCGGACAGCCAGGACCACGCCGGTGT
CAAATGCAAGTCCCTTCGCACCGTTACCTTTCCCGAGACCCTGGACATGT
TCGACTTCTGCAACAAGACGCTGCAGGATCGGCTTATGATCACGCGTGAG
AAGGAAGTAGACGAAATCTTGGGTAAGGGTCTGGATAAGGAGGACATGGG
CGATGAAAGCAAGGACATTGCCGTGGCCGACGCTGGGGTTGCCGACGTTG
AGGACGAGGAGGAGAAGGCCGCGCTGCGAGCGGCGCTAGCCATGTCCATG
GCGGAGTCGGCGAACGCGGTTGTGTCTCCTACACCGTGCGGACCCGGACT
GCCTCTGGATTTCAAGGGCATTTACGAGCTATTCGGCGTGGTGACGCACA
AGGGTCGGACAGCAGACGGCGGACACTACATGGGCTGGGTCCGGCAGAAG
GGCGATAACTGGCTAGTCTTCGACGACGAGGACGTGTCGGAGTGCAAGAC
GTCTGAAGTACTACAGCTCTCAGGGGGCGGGGACTGGCATATGGCGTACC
TCTGCTTCTATCGCTACAAGGGCACAGGAGGTGTCGAAGACGAGAAGGCC
TCTGCGGCAGCGGCTGAGAAGTGAAACACTTGTAAGGGCGACGGAAGCTT
GGAGAGCGAAATATTCGAGAACTATGGCAGGAACTACAGTTTCAAAAGCA
GGCCGCTGTTTATGTAGGATACTTGAATGGAAAACGGCTGAAATAGGTCA
GGACCAGCACGCGAAGAGAAGGAAAGTTACGATAAACGAATGAGA back to topCoding sequence (CDS) from alignment at chr11:359371..361165- >NO11G00930.1 ID=NO11G00930.1|Name=NO11G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at chr11:359371..361165- (Nannochloropsis oceanica)
ATGGGGCCTGCCAAGGTACAGATTAAGTGGAACAAACAGACTTTTACGGA
TGTCCCATTGGACATCACTCAGCCCGCCTTGGCTTTCAAACAGCATGTCT
CCGAGCTGACAGGCGTGCCCGTGGAGCGGCAAAAGCTCATGGGAAAGGGT
TTGTGGAAGCTAGCCCTCAAAGATGACGAGGACCTTTCCAAGCTCATCGT
CAAGGACGGAGCGGTAGTTATGCTGGTGGGAACGGCAGACGTGGTCAAAG
AACCCGCGGAGAAGGTAGTTTTTGTGGAGGACATGGCACAGGCCGATCAG
GCCAAGTCTGGTGCAATTCTCCCCGCGGGCCTGCGCAATCTCGGCAACAC
TTGCTATCTCAACTCTACACTGCAGTGCTTGCGATACGTGCCGGAGCTCC
GACAAGCTCTGAACCTGTTCACGGGCACGGGCACCAACCAACAACCCTTC
TTGACGAACGCCCTCAAGGACACGCTCAACCTGCTGGACGGTACTACCGA
GCCCGTACCGCCGATGCAGTTCGTCATGCTTCTGCGCCAGCAATTTCCGC
AATTCGCCCAGCAATCTCGGGGCCACTTTATGCAGCAGGATGCGGATGAG
TTTTTGAATGAGCTGCTAACCTCGCTGGCCGCTAATCTGCGCGAGGCGTA
CGTGCTGCCCACGCTGGAGGACGCGGGAAACTTCGTGGACGCTCTGCTGG
GCATGGAGGTGGAGGACACCCTGACCTGTGCTGAGACGGAGGCAGAGCCG
GCTGTGCTTAAACGCGACCAAGTGCGTAAGCTGGTGTGCAACATTCAGGG
CGGTGCGGGCAGCGACGTGAAGATAAACTACCTGCATGAGGGCGTCAAGC
TAGCGCTGGAGGGCACCATCGAGAAGCAGAGCGCGGTGCTGGGCCGGAAC
GCGGTCTGGAACAAGACAACGCGCATTTCACGCTTGCCCCGCTACCTGTG
CGTACAGTTTATGCGCTTCTTCTGGAAGGCTACTCCGGACAGCCAGGACC
ACGCCGGTGTCAAATGCAAGTCCCTTCGCACCGTTACCTTTCCCGAGACC
CTGGACATGTTCGACTTCTGCAACAAGACGCTGCAGGATCGGCTTATGAT
CACGCGTGAGAAGGAAGTAGACGAAATCTTGGGTAAGGGTCTGGATAAGG
AGGACATGGGCGATGAAAGCAAGGACATTGCCGTGGCCGACGCTGGGGTT
GCCGACGTTGAGGACGAGGAGGAGAAGGCCGCGCTGCGAGCGGCGCTAGC
CATGTCCATGGCGGAGTCGGCGAACGCGGTTGTGTCTCCTACACCGTGCG
GACCCGGACTGCCTCTGGATTTCAAGGGCATTTACGAGCTATTCGGCGTG
GTGACGCACAAGGGTCGGACAGCAGACGGCGGACACTACATGGGCTGGGT
CCGGCAGAAGGGCGATAACTGGCTAGTCTTCGACGACGAGGACGTGTCGG
AGTGCAAGACGTCTGAAGTACTACAGCTCTCAGGGGGCGGGGACTGGCAT
ATGGCGTACCTCTGCTTCTATCGCTACAAGGGCACAGGAGGTGTCGAAGA
CGAGAAGGCCTCTGCGGCAGCGGCTGAGAAGTGA back to top
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