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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:345201..348737 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00870.1 vs.
Match: EWM25106.1 (Peroxisome membrane anchor protein Pex14p [Nannochloropsis gaditana]) HSP 1 Score: 159.5 bits (402), Expect = 1.100e-35 Identity = 104/207 (50.24%), Postives = 130/207 (62.80%), Query Frame = 0
Query: 11 KDLSRAVAFLALERVQQSSDDTRMAFLIGKGFTKDEIVEATRQAENV--RRSTSST---SNDGHQTFGGATALAVPLTTIGHV-TEPGAKFSTRVMLGGGSISFVSLASGPDDGIITPQAQLNTLLARF-NTLLASAPS-------PRDKADVAVIYLSVKGLARCEEEVHKALDCWVDAHAPPMRFLVE-QTGKRNMVNLMAVVRG 203
KDLSRAVAFL LERVQ +SD + FL+GKGFT DEI +A QA +V +R+ S+ S G+QTFG A P+++I HV EP AK S+ V L GG++SFV+L S P DG +P + LL TL+A P+ RDKADVAVI LSV GL CE ++H LD WVD APP RF+V T KR+ L+A+VRG
Sbjct: 12 KDLSRAVAFLTLERVQGTSDKLKTDFLLGKGFTTDEISDAMLQARDVIEKRNKSAARVHSVGGNQTFGAAA--PTPVSSIAHVLPEPNAKASSLVTLRGGALSFVALGSKPYDGNTSPSFIVENLLKDLERTLVAPVPADGGQRDIARDKADVAVICLSVYGLQDCENDIHAILDKWVDPQAPPARFVVSAPTEKRHAAQLLAIVRG 216
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00870.1 ID=NO11G00870.1|Name=NO11G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3415bp
GTTGTTGTTGTCGTTGTTGTTGTTTTTGACGTTGTTTTCATTGTTGTTGT
TGCTGCTGTTGCTTGTGCTGCTGCTGCTAGCAGACCCGTCAATCGGCACC
ACCAACACGATCTGTGAGACGGGATCAATCTTGCGAAAGGCGGATGGAGC
CTCTCTTGAAAACCGGAATGAGATGGAATAACGGCCGGGAGTCTTGAACT
GCGGGACTCGGAAGTAGAAAAGTCCGCCGACAGTAGACTGGCCTGCCTCG
TCGTACAGCACCTACAACGGAATGAGGAAGAAAGGGAAAGAGCGAGAAGG
GGGTGGGGATAATTCCGTGAGTCTAATAGATTGTGGTAATGGTGGCTGTG
GAATTGTAAAACAAATACCTCTTCCGTGTTGATCTCCTCTCCCTTACTGT
CCAGTTTACTCGCGAGGGCAGCAATGCGATAGCGAAGCGGCACGTCTTTA
TAAAGCTCGGGCAGGATCCTTTCGCCCTTGACGCTCATGAGGGCCAAAGC
AAAAAAATTGTCCCCACGGTGAGACCACCCAAAAGCCTTCGTTCGCACGT
CGGGGTTTTTGATCCGAATGGTCGCGTTGAGCAAGGTGCCCTTTGAATGT
CGATCCGCCACAAGTTCGAGACGCTTGGGTGCCTCCGACACATAGTGACT
TTTTTTGTATGTACTTTTTTTGGCATTTATGTCATAAGTGGCACTAGATT
GGCCGCCTGCCGAATTATTGCCACCGCCGGCATCTCCCGTATTTGCGATG
CTGGTACTGCTGCTGCGGGAGGTCAGTTTTGCAAACGCTGCCGCTGCCCG
GCCAGGCCTCTCTTCCTTCACGATCGGCACTACCGGTACTTCAACTTGTA
CTCCTTCTCGTGAGTTATATGATTTTTGTCCCTCCTGTTTGATGGTCAAA
GGGCCGTTGCCACTGCTACTGCTTGCCGTGGGGGCGCTGCTGCTGCCCCC
CCCCCGCGTAGTACGCCGGCGCAGTCCTGGCGCAGCCTCTACTCCGCTTA
TCTCCTCCCTACAATGTTTTTTATTGTTGATGGTTGAGGCAATCGCATGC
CCAGCGGCCTCGCTACTCTTTTCTACAATACTTTGCGGCGACTTCTCCTC
TTCTTGCGCGGTGATGGTGTGTTGTTGGTGGGCTGGCGACAGGGCCGTGA
AACCAGCCTGTTTGCTTCGCGTCCTATTTGCTGGCCGTGCCATGGCCGTA
TCATCTTGCATCACTAGCTGCGACGAGTGTGCTATGCATGAGTTGTGAGT
CTTGGAAGATTGCAGGATTGAGTTTGCTAGTGGCTGCCACAGTGTGGCGG
GAGAAAAATCGGCGACCGTCGTGATGACGAGAGAGCGAGGCACATGAGAA
AGTGTGCATTCGTCAAGTAACCCACGCCCTCCTGGAAAACTCACGTTATT
TTCAGGCAACATTAGTAACGCCAGCCCGTTCTGCAACGGGGCGGAAACAA
AAGAGCCTGCCTGTCTGCCAGCATTTGCCATCTCTAAGTCTTTCTGCTGG
GGATCAAGCCCTCGGCAAAAACTCAAGTTTACGGAGACATTTTGGTAGAC
CAATGCCTTACAAGCGCCTCAAAGCCTCTTACAGGCGCCTGAGGAATCTC
ATCCCACCTCTTCAAACACTTAGCCTCGCCGTCCTGTATTCTGACTGCCT
CCGAGGCCTTACCATACCATCCTATAGCGGGCTTCCTGAAGAGCGAGGGT
GGCGGCGAAGGTCGCAACACTTCAATCGGCTTGTGTGAGATATGCTAGGT
TTACAATGAGCAGCGCCTCTCCCAAACGAAGCACTAAAGACCTGAGTCGC
GCGGTAGCTTTCCTGGCCCTGGAACGAGTTCAGCAGTCCTCGGACGATAC
CAGAATGGCCTTTTTGATCGGGAAGGGGTTCACAAAAGACGAAATTGTTG
AGGCCACGCGCCAAGCGGAAAATGTGAGGCGATCGACGAGTTCAACGTCT
AATGATGGGCATCAGACCTTTGGTGGAGCTACAGCACTAGCCGTGCCCCT
CACGACTATTGGCCACGTCACAGAGCCAGGGGCCAAATTCAGTACGCGTG
TGATGCTCGGAGGTGGGAGCATCTCCTTCGTCTCACTCGCAAGCGGACCT
GATGACGGCATTATCACTCCGCAAGCTCAGTTGAATACATTATTGGCACG
TTTCAATACTTTGCTTGCATCCGCACCGTCACCACGAGACAAGGCAGACG
TTGCTGTCATTTATCTATCTGTGAAAGGACTGGCGAGGTGCGAGGAGGAG
GTCCACAAAGCTTTGGATTGCTGGGTAGATGCCCATGCCCCACCCATGCG
CTTCTTGGTTGAGCAAACGGGTAAACGAAATATGGTTAATTTGATGGCAG
TCGTAAGGGGATAGCATAAGAGGGGGGAACAGCAGAACGTTTACAGGCCA
CATAAAAGGTTAGATAAATGAAGAAGCCAGTAGAAGAGAGTAGAGACGAT
TGTTGATAATCAAGTGTTGGAGGAAGACAGTGACAAAGCTATTTAATCGG
ACGATATTTCGTCTCCTTTCCTTAACGGGGGATGTTTAAGAGGGGAGGCA
TAATGGGAATACAACGCTTCACCCGGCAAATTTGGATTGTCCTTCTTTGG
CCTCTAAAAAAGCACGCACTTTCCGTTCGACTTCCTACCCATTCTCCTCG
CCTGATCAAATCCAATTTCTCTCCATACTTTGGGGTCGAAGATTCCTCAG
CCCGTGACAAAGTCCACTCAGTATACATCCCAGCATCTGTCTTTCCTCGT
TCCTCGAGCGATCTTACCCTCTTGCGCCATACCCTTTTTCCTTTCTCCCT
CCTCCCCTGAATCTTTTCCTCTTCTCTATCTTGGCCTTAATTCCTAAATC
TGCGAGAATTTCTGAGGGAGGAGGGCGCACAACAAAGACGGAAAATACAC
GATGTCCTTGTTGAAACTATTTCCTTTTCTTCGGGAGGAGTGAGGTGCCC
TGGGAATTCACTCTCAATCTGTATGAAGACAACATCAGAGGTTGCACACG
GTGGTGACTACTAGATAGCACAGGCTGTCTCATAGGCCACGAAACAAATT
CGAGTGGGCTTTTCTTGGCGTTGGCTTGTTAGTTTCTTGCTGCTAGCGCC
CTCTAGCGGGGGGGTACACGCGCGCCAGAGACATATTACGAGTTCATATG
TTGTATGTGAACAGAAGTCCGCATTCGAGGGGCCAGGGGCATACAGGCAT
ATATATACCCTCAGCTTGGTCCCAGCGTAAGGAAATATGCGCATTTTGAA
TTCTTTTTCGATGGCTACATGGAAATACCACACAATACACCAATACACGC
AATAAATCAAGCTGGAGGTTGAAGCGCTAACACCGTCTTCTTCCTATCTC
ATAAGCCACAATCGTATCCGGGAAGATGAAGATCACCCTGTGCCCTTCCC
GGCAGCTCATCCTCG back to topprotein sequence of NO11G00870.1 >NO11G00870.1-protein ID=NO11G00870.1-protein|Name=NO11G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSSASPKRSTKDLSRAVAFLALERVQQSSDDTRMAFLIGKGFTKDEIVEA
TRQAENVRRSTSSTSNDGHQTFGGATALAVPLTTIGHVTEPGAKFSTRVM
LGGGSISFVSLASGPDDGIITPQAQLNTLLARFNTLLASAPSPRDKADVA
VIYLSVKGLARCEEEVHKALDCWVDAHAPPMRFLVEQTGKRNMVNLMAVV
RG* back to topmRNA from alignment at chr11:345201..348737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00870.1 ID=NO11G00870.1|Name=NO11G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3537bp|location=Sequence derived from alignment at chr11:345201..348737- (Nannochloropsis oceanica)
GTTGTTGTTGTCGTTGTTGTTGTTTTTGACGTTGTTTTCATTGTTGTTGT
TGCTGCTGTTGCTTGTGCTGCTGCTGCTAGCAGACCCGTCAATCGGCACC
ACCAACACGATCTGTGAGACGGGATCAATCTTGCGAAAGGCGGATGGAGC
CTCTCTTGAAAACCGGAATGAGATGGAATAACGGCCGGGAGTCTTGAACT
GCGGGACTCGGAAGTAGAAAAGTCCGCCGACAGTAGACTGGCCTGCCTCG
TCGTACAGCACCTACAACGGAATGAGGAAGAAAGGGAAAGAGCGAGAAGG
GGGTGGGGATAATTCCGTGAGTCTAATAGATTGTGGTAATGGTGGCTGTG
GAATTGTAAAACAAATACCTCTTCCGTGTTGATCTCCTCTCCCTTACTGT
CCAGTTTACTCGCGAGGGCAGCAATGCGATAGCGAAGCGGCACGTCTTTA
TAAAGCTCGGGCAGGATCCTTTCGCCCTTGACGCTCATGAGGGCCAAAGC
AAAAAAATTGTCCCCACGGTGAGACCACCCAAAAGCCTTCGTTCGCACGT
CGGGGTTTTTGATCCGAATGGTCGCGTTGAGCAAGGTGCCCTTTGAATGT
CGATCCGCCACAAGTTCGAGACGCTTGGGTGCCTCCGACACATAGTGACT
TTTTTTGTATGTACTTTTTTTGGCATTTATGTCATAAGTGGCACTAGATT
GGCCGCCTGCCGAATTATTGCCACCGCCGGCATCTCCCGTATTTGCGATG
CTGGTACTGCTGCTGCGGGAGGTCAGTTTTGCAAACGCTGCCGCTGCCCG
GCCAGGCCTCTCTTCCTTCACGATCGGCACTACCGGTACTTCAACTTGTA
CTCCTTCTCGTGAGTTATATGATTTTTGTCCCTCCTGTTTGATGGTCAAA
GGGCCGTTGCCACTGCTACTGCTTGCCGTGGGGGCGCTGCTGCTGCCCCC
CCCCCGCGTAGTACGCCGGCGCAGTCCTGGCGCAGCCTCTACTCCGCTTA
TCTCCTCCCTACAATGTTTTTTATTGTTGATGGTTGAGGCAATCGCATGC
CCAGCGGCCTCGCTACTCTTTTCTACAATACTTTGCGGCGACTTCTCCTC
TTCTTGCGCGGTGATGGTGTGTTGTTGGTGGGCTGGCGACAGGGCCGTGA
AACCAGCCTGTTTGCTTCGCGTCCTATTTGCTGGCCGTGCCATGGCCGTA
TCATCTTGCATCACTAGCTGCGACGAGTGTGCTATGCATGAGTTGTGAGT
CTTGGAAGATTGCAGGATTGAGTTTGCTAGTGGCTGCCACAGTGTGGCGG
GAGAAAAATCGGCGACCGTCGTGATGACGAGAGAGCGAGGCACATGAGAA
AGTGTGCATTCGTCAAGTAACCCACGCCCTCCTGGAAAACTCACGTTATT
TTCAGGCAACATTAGTAACGCCAGCCCGTTCTGCAACGGGGCGGAAACAA
AAGAGCCTGCCTGTCTGCCAGCATTTGCCATCTCTAAGTCTTTCTGCTGG
GGATCAAGCCCTCGGCAAAAACTCAAGTTTACGGAGACATTTTGGTAGAC
CAATGCCTTACAAGCGCCTCAAAGCCTCTTACAGGCGCCTGAGGAATCTC
ATCCCACCTCTTCAAACACTTAGCCTCGCCGTCCTGTATTCTGACTGCCT
CCGAGGCCTTACCATACCATCCTATAGCGGGCTTCCTGAAGAGCGAGGGT
GGCGGCGAAGGTCGCAACACTTCAATCGGCTTGTGTGAGATATGCTAGGT
ATTTTTCGACCCAATATCTATGCACACCAGAAAATCCATTGCTTTATTCT
TGCTCGATGGTGGTGGTATATTTTCATGTCGAGATTTACGCATCCCGAAC
CTCCCCCTACATGTACGCAGGTTTACAATGAGCAGCGCCTCTCCCAAACG
AAGCACTAAAGACCTGAGTCGCGCGGTAGCTTTCCTGGCCCTGGAACGAG
TTCAGCAGTCCTCGGACGATACCAGAATGGCCTTTTTGATCGGGAAGGGG
TTCACAAAAGACGAAATTGTTGAGGCCACGCGCCAAGCGGAAAATGTGAG
GCGATCGACGAGTTCAACGTCTAATGATGGGCATCAGACCTTTGGTGGAG
CTACAGCACTAGCCGTGCCCCTCACGACTATTGGCCACGTCACAGAGCCA
GGGGCCAAATTCAGTACGCGTGTGATGCTCGGAGGTGGGAGCATCTCCTT
CGTCTCACTCGCAAGCGGACCTGATGACGGCATTATCACTCCGCAAGCTC
AGTTGAATACATTATTGGCACGTTTCAATACTTTGCTTGCATCCGCACCG
TCACCACGAGACAAGGCAGACGTTGCTGTCATTTATCTATCTGTGAAAGG
ACTGGCGAGGTGCGAGGAGGAGGTCCACAAAGCTTTGGATTGCTGGGTAG
ATGCCCATGCCCCACCCATGCGCTTCTTGGTTGAGCAAACGGGTAAACGA
AATATGGTTAATTTGATGGCAGTCGTAAGGGGATAGCATAAGAGGGGGGA
ACAGCAGAACGTTTACAGGCCACATAAAAGGTTAGATAAATGAAGAAGCC
AGTAGAAGAGAGTAGAGACGATTGTTGATAATCAAGTGTTGGAGGAAGAC
AGTGACAAAGCTATTTAATCGGACGATATTTCGTCTCCTTTCCTTAACGG
GGGATGTTTAAGAGGGGAGGCATAATGGGAATACAACGCTTCACCCGGCA
AATTTGGATTGTCCTTCTTTGGCCTCTAAAAAAGCACGCACTTTCCGTTC
GACTTCCTACCCATTCTCCTCGCCTGATCAAATCCAATTTCTCTCCATAC
TTTGGGGTCGAAGATTCCTCAGCCCGTGACAAAGTCCACTCAGTATACAT
CCCAGCATCTGTCTTTCCTCGTTCCTCGAGCGATCTTACCCTCTTGCGCC
ATACCCTTTTTCCTTTCTCCCTCCTCCCCTGAATCTTTTCCTCTTCTCTA
TCTTGGCCTTAATTCCTAAATCTGCGAGAATTTCTGAGGGAGGAGGGCGC
ACAACAAAGACGGAAAATACACGATGTCCTTGTTGAAACTATTTCCTTTT
CTTCGGGAGGAGTGAGGTGCCCTGGGAATTCACTCTCAATCTGTATGAAG
ACAACATCAGAGGTTGCACACGGTGGTGACTACTAGATAGCACAGGCTGT
CTCATAGGCCACGAAACAAATTCGAGTGGGCTTTTCTTGGCGTTGGCTTG
TTAGTTTCTTGCTGCTAGCGCCCTCTAGCGGGGGGGTACACGCGCGCCAG
AGACATATTACGAGTTCATATGTTGTATGTGAACAGAAGTCCGCATTCGA
GGGGCCAGGGGCATACAGGCATATATATACCCTCAGCTTGGTCCCAGCGT
AAGGAAATATGCGCATTTTGAATTCTTTTTCGATGGCTACATGGAAATAC
CACACAATACACCAATACACGCAATAAATCAAGCTGGAGGTTGAAGCGCT
AACACCGTCTTCTTCCTATCTCATAAGCCACAATCGTATCCGGGAAGATG
AAGATCACCCTGTGCCCTTCCCGGCAGCTCATCCTCG back to topCoding sequence (CDS) from alignment at chr11:345201..348737- >NO11G00870.1 ID=NO11G00870.1|Name=NO11G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr11:345201..348737- (Nannochloropsis oceanica)
ATGAGCAGCGCCTCTCCCAAACGAAGCACTAAAGACCTGAGTCGCGCGGT
AGCTTTCCTGGCCCTGGAACGAGTTCAGCAGTCCTCGGACGATACCAGAA
TGGCCTTTTTGATCGGGAAGGGGTTCACAAAAGACGAAATTGTTGAGGCC
ACGCGCCAAGCGGAAAATGTGAGGCGATCGACGAGTTCAACGTCTAATGA
TGGGCATCAGACCTTTGGTGGAGCTACAGCACTAGCCGTGCCCCTCACGA
CTATTGGCCACGTCACAGAGCCAGGGGCCAAATTCAGTACGCGTGTGATG
CTCGGAGGTGGGAGCATCTCCTTCGTCTCACTCGCAAGCGGACCTGATGA
CGGCATTATCACTCCGCAAGCTCAGTTGAATACATTATTGGCACGTTTCA
ATACTTTGCTTGCATCCGCACCGTCACCACGAGACAAGGCAGACGTTGCT
GTCATTTATCTATCTGTGAAAGGACTGGCGAGGTGCGAGGAGGAGGTCCA
CAAAGCTTTGGATTGCTGGGTAGATGCCCATGCCCCACCCATGCGCTTCT
TGGTTGAGCAAACGGGTAAACGAAATATGGTTAATTTGATGGCAGTCGTA
AGGGGATAG back to top
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