NO11G00830.1, NO11G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00830.1
Unique NameNO11G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2694
Alignment locationchr11:329067..331928 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:329067..331928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00830.1 vs.
Match: EWM25114.1 (Peroxisome membrane anchor protein Pex14p [Nannochloropsis gaditana])

HSP 1 Score: 267.3 bits (682), Expect = 1.600e-67
Identity = 136/166 (81.93%), Postives = 151/166 (90.96%), Query Frame = 0 
Query:  588 GKEKVVPNIYPSWEAATHNPVTNKGSDDALPWFKTIASGRVQKHLMRFVNNFISQQDLEDELGLYMADIFYETETGPTMMALFDKLICRVAERCPSRLQEFREEALKSLAQLMQACEEREEQQERGREALKTSGQRGKPVRNAAKRLGKSRTEARKLGAMIAHYRS 754
            GK+K   + +P+ + +THN +T++GSDDALPWFKTIASGRVQKHLMRFVNNFISQQDLEDELGLYMADIFYETETGPTMMAL+DKL  RV+ERCP  L  FREEAL+SL QLMQACEEREEQQE+GR+ALK+SGQRGKPVRNAAKRLGKSRTE RKLGAMIAHYRS
Sbjct:  447 GKDKRESSNHPTPDTSTHNTITSQGSDDALPWFKTIASGRVQKHLMRFVNNFISQQDLEDELGLYMADIFYETETGPTMMALYDKLERRVSERCPGHLTTFREEALQSLHQLMQACEEREEQQEQGRKALKSSGQRGKPVRNAAKRLGKSRTEGRKLGAMIAHYRS 612
The following BLAST results are available for this feature:
BLAST of NO11G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25114.11.600e-6781.93Peroxisome membrane anchor protein Pex14p [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00830NO11G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00830.1NO11G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00830.1.cds1NO11G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00830.1.cds2NO11G00830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00830.1 ID=NO11G00830.1|Name=NO11G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp
AGGAGACAGGTAGGAGAACTTGGCGCGATCTCTGACAGGATCGGTGCAGG
ACCAAAGGCAAGAGGCCAACGTGCGAAGCAGGCGGATCGACACACACGAA
ATATCAACGGCTTGGCTCCGGGCGGGTCACGATTGCAGGGACACTGTGGT
GTGGCAATGAACACAGGAAGGGCCGTAGCGGACGAAAATGCAGAGGATGA
TTGCGCCAGCTCGTTCGGGGGTGGGGAAGACTCGACGGCCCTGGAATTTC
TGACGGTTCCTATCGTGGCCCAGATGCACGTGTCCTCTCGCATCACCTTC
CTCGAGAGCAAGGGCTTCAACGAGACGGAGATCAGCGCTGCCTTGCACCT
GACCGACGAGGAATTTCAAAGAAATCCACACATAATGCATCGCAGCCCAC
AGACGGGCCCGGGAGCAGCAGTGGGAGAAGGACGAGAAGGAGACATGACG
ACAAAAGAAGTAGCTGAGGGGTCGCACGCAGGCGACCAGTCCTGGAGCCC
GTCCAGTCCCAGCGCTAATTCGTGGTCGCATCTGATGGATGGGGGAACGC
AACATACCGCGCCTTGGGGGGAGTCGTTGGCGCTGCAATGTCAGGCTCAA
TCCCAGACGCTGTCCCTCGTCCCTGCTGCAGGCTTCATCCCTTCGCGCTC
GCTGCGGCCGCCAGCTTTGAGAGGCCCGGTCCAAGATGACCGAGGCATAG
GTGTGTTGTCGACCATGATGGCGGCCGTAGAGGTGGAGAAGCTGACGTTG
CAGAGCAGAAATTCTTTTCGGGCGGAGATTGGGGGATGCCGTTTCCCGCA
TCAACACCCGCTGCAATCATTGTCGCAGCAGCATCAGCAGCAGCAAGAGA
CTTCACGCCCAGTGTCTCCCTCCGTCCCTGCACAGCACCCTTGCAATCAG
CAGCAGCAACAGAAAATGCAGCAGCTACAGCAACAACAACAGAAAATGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGA
AAATGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGTGGAA
ATGCAGCAGCATCAGCAGCATCAGCAGCAAGTGCAGCAAATGCAGCACGG
TGGAGGAGGACAGCGAGGATTCACCTTGTACCCTCCCTACCACCACCACC
ACCACCTCCCGTCCCATCATCGTCACAAACACGCGTACGGCTCTCGCAGC
GTGCCCCGAGGTCGCATACATTACCCCCACCATCCCCAGCAGACGCAGCG
GCAGGACCAACAACGCCTCCTCTTCCACCTGAAACGTCAACAACAACAAC
AACAACAACAACAACAAGAACAAGAACAAGAACAAGAACAGCAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACCACAACAACAACAACAACCACTACTCCAACAACAACCGCTGGCTG
TGCCGCAAGTAGGAAGGCAGGAATGTCACAGCGGCTGTGAAGGTTTATCT
TCGCCTTACTTCATTCCGCCTCAGCTGCACCCCCACCACCAAGAGCACCA
GATCTCGTTGGGTGGATACTATGATGGATCAAGGGGCATTCCGGCGGCGG
ATATTGGCTTTCCATGGCATGCCCGTCGGCGTGAGACGCGCTGTACTCAC
AAAATTTACAACATCGGAGAGCCCGACTATTTCTACAGGTATGACACAAG
CAGCAGCACAAGCAGCAGCAGCAGTAGCAGCAAGAACAATAGTAATTTCA
ACCCCGAGCCTACCAGCACCAGCAGTACCCGCACCCGCAGCAGCAGCACC
CGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGGCAGTACAGGCATTGTTC
AGCGGGCGGAGAGCAGCTGGAAGGTGCCAGCAGCAGCCCAACGCTGGAGG
CAGGCGGGGCTGGTGGTGGGAAGGAGAAGGTCGTGCCCAATATCTACCCG
TCTTGGGAGGCAGCGACACACAACCCGGTCACCAATAAGGGGAGTGACGA
TGCCTTGCCCTGGTTTAAGACCATCGCCAGTGGTCGCGTCCAGAAGCATT
TGATGCGGTTCGTGAACAATTTCATCTCCCAGCAGGACCTGGAGGACGAG
TTGGGGTTGTATATGGCCGACATTTTCTACGAGACAGAGACCGGGCCGAC
CATGATGGCACTCTTCGACAAGCTAATATGTCGCGTAGCTGAGCGTTGCC
CCAGCCGCCTTCAGGAATTTCGGGAGGAAGCCTTAAAGAGCCTGGCGCAG
CTCATGCAGGCTTGCGAAGAGCGGGAGGAGCAGCAGGAGCGGGGTCGTGA
GGCGCTCAAGACTTCGGGTCAGCGCGGTAAGCCTGTGCGAAACGCTGCCA
AGCGCTTGGGGAAGTCGCGCACCGAGGCTCGTAAACTTGGTGCTATGATT
GCTCACTACCGATCCTTGCCTAGCGAGGATGGGGAAGACGAGAAGGGAGG
ACAGATTGGTGGGACAGGGGAGGATGAGATGAGTGTGCTGAAAGGGCTTC
CATTTAACCCTGTGCCAATGATGGGCAGCAACCTCAACGAGGACAAGGGC
GGACAGCAAGACGGAGCCGGGGAGGCGAAGGGGCGGCAGGCCCGTTTGCA
CTTTTTGGAGGACGAAGAGGACCAGAATGAGGAGGAGGACGTGTGGGATG
ACGACTATGATTTGGAGGAGGTGGAGGACGAGGAGAAGAAATAA
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protein sequence of NO11G00830.1

>NO11G00830.1-protein ID=NO11G00830.1-protein|Name=NO11G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=846bp
MNTGRAVADENAEDDCASSFGGGEDSTALEFLTVPIVAQMHVSSRITFLE
SKGFNETEISAALHLTDEEFQRNPHIMHRSPQTGPGAAVGEGREGDMTTK
EVAEGSHAGDQSWSPSSPSANSWSHLMDGGTQHTAPWGESLALQCQAQSQ
TLSLVPAAGFIPSRSLRPPALRGPVQDDRGIGVLSTMMAAVEVEKLTLQS
RNSFRAEIGGCRFPHQHPLQSLSQQHQQQQETSRPVSPSVPAQHPCNQQQ
QQKMQQLQQQQQKMQQQQQQQQQQQQQQQQQKMQQQEEEEEEEEKEVEMQ
QHQQHQQQVQQMQHGGGGQRGFTLYPPYHHHHHLPSHHRHKHAYGSRSVP
RGRIHYPHHPQQTQRQDQQRLLFHLKRQQQQQQQQQQEQEQEQEQQQQQQ
QQQQQQQQQQQQQQQQPQQQQQPLLQQQPLAVPQVGRQECHSGCEGLSSP
YFIPPQLHPHHQEHQISLGGYYDGSRGIPAADIGFPWHARRRETRCTHKI
YNIGEPDYFYRYDTSSSTSSSSSSSKNNSNFNPEPTSTSSTRTRSSSTRS
SSSSSSTSRQYRHCSAGGEQLEGASSSPTLEAGGAGGGKEKVVPNIYPSW
EAATHNPVTNKGSDDALPWFKTIASGRVQKHLMRFVNNFISQQDLEDELG
LYMADIFYETETGPTMMALFDKLICRVAERCPSRLQEFREEALKSLAQLM
QACEEREEQQERGREALKTSGQRGKPVRNAAKRLGKSRTEARKLGAMIAH
YRSLPSEDGEDEKGGQIGGTGEDEMSVLKGLPFNPVPMMGSNLNEDKGGQ
QDGAGEAKGRQARLHFLEDEEDQNEEEDVWDDDYDLEEVEDEEKK*
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mRNA from alignment at chr11:329067..331928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00830.1 ID=NO11G00830.1|Name=NO11G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2862bp|location=Sequence derived from alignment at chr11:329067..331928+ (Nannochloropsis oceanica)
AGGAGACAGGTAGGAGAACTTGGCGCGATCTCTGACAGGATCGGTGCAGG
ACCAAAGGCAAGAGGCCAACGTGCGAAGCAGGCGGATCGACACACACGAA
ATATCAACGGCTTGGCTCCGGGCGGGTCACGATTGCAGGGACACTGTGGT
GTGGCAATGAACACAGGAAGGGCCGTAGCGGACGAAAATGCAGAGGATGA
TTGCGCCAGCTCGTTCGGGGGTGGGGAAGACTCGACGGCCCTGGAATTTC
TGACGGTTCCTATCGTGGCCCAGATGCACGTGTCCTCTCGCATCACCTTC
CTCGAGAGCAAGGGCTTCAACGAGACGGAGATCAGCGCTGCCTTGCACCT
GACCGACGAGGAATTTCAAAGAAATCCACACATAATGCATCGCAGCCCAC
AGACGGGCCCGGGAGCAGCAGTGGGAGAAGGACGAGAAGGAGACATGACG
ACAAAAGAAGTAGCTGAGGGGTCGCACGCAGGCGACCAGTCCTGGAGCCC
GTCCAGTCCCAGCGCTAATTCGTGGTCGCATCTGATGGATGGGGGAACGC
AACATACCGCGCCTTGGGGGGAGTCGTTGGCGCTGCAATGTCAGGCTCAA
TCCCAGACGCTGTCCCTCGTCCCTGCTGCAGGCTTCATCCCTTCGCGCTC
GCTGCGGCCGCCAGCTTTGAGAGGCCCGGTCCAAGATGACCGAGGCATAG
GTGTGTTGTCGACCATGATGGCGGCCGTAGAGGTGGAGAAGCTGACGTTG
CAGAGCAGAAATTCTTTTCGGGCGGAGATTGGGGGATGCCGTTTCCCGCA
TCAACACCCGCTGCAATCATTGTCGCAGCAGCATCAGCAGCAGCAAGAGA
CTTCACGCCCAGTGTCTCCCTCCGTCCCTGCACAGCACCCTTGCAATCAG
CAGCAGCAACAGAAAATGCAGCAGCTACAGCAACAACAACAGAAAATGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGA
AAATGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGTGGAA
ATGCAGCAGCATCAGCAGCATCAGCAGCAAGTGCAGCAAATGCAGCACGG
TGGAGGAGGACAGCGAGGATTCACCTTGTACCCTCCCTACCACCACCACC
ACCACCTCCCGTCCCATCATCGTCACAAACACGCGTACGGCTCTCGCAGC
GTGCCCCGAGGTCGCATACATTACCCCCACCATCCCCAGCAGACGCAGCG
GCAGGACCAACAACGCCTCCTCTTCCACCTGAAACGTCAACAACAACAAC
AACAACAACAACAACAAGAACAAGAACAAGAACAAGAACAGCAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACCACAACAACAACAACAACCACTACTCCAACAACAACCGCTGGCTG
TGCCGCAAGTAGGAAGGCAGGAATGTCACAGCGGCTGTGAAGGTTTATCT
TCGCCTTACTTCATTCCGCCTCAGCTGCACCCCCACCACCAAGAGCACCA
GATCTCGTTGGGTGGATACTATGATGGATCAAGGGGCATTCCGGCGGCGG
ATATTGGCTTTCCATGGGTATGTTGTGATCGTTGGTCGAATGGGAGTAAA
GGTGAAGAAGAAAGGAGGGCGGGGAGAGGAGAAGAATGAATTCTACCATG
TGTAAATGGCATGGAATGGGATTATCCCTTTGAAAACATGCATAACTCAC
TTTCTCTTTCTATTCATGCGTACATCTGATCACAGCATGCCCGTCGGCGT
GAGACGCGCTGTACTCACAAAATTTACAACATCGGAGAGCCCGACTATTT
CTACAGGTATGACACAAGCAGCAGCACAAGCAGCAGCAGCAGTAGCAGCA
AGAACAATAGTAATTTCAACCCCGAGCCTACCAGCACCAGCAGTACCCGC
ACCCGCAGCAGCAGCACCCGCAGCAGCAGCAGCAGCAGCAGCACCAGCAG
GCAGTACAGGCATTGTTCAGCGGGCGGAGAGCAGCTGGAAGGTGCCAGCA
GCAGCCCAACGCTGGAGGCAGGCGGGGCTGGTGGTGGGAAGGAGAAGGTC
GTGCCCAATATCTACCCGTCTTGGGAGGCAGCGACACACAACCCGGTCAC
CAATAAGGGGAGTGACGATGCCTTGCCCTGGTTTAAGACCATCGCCAGTG
GTCGCGTCCAGAAGCATTTGATGCGGTTCGTGAACAATTTCATCTCCCAG
CAGGACCTGGAGGACGAGTTGGGGTTGTATATGGCCGACATTTTCTACGA
GACAGAGACCGGGCCGACCATGATGGCACTCTTCGACAAGCTAATATGTC
GCGTAGCTGAGCGTTGCCCCAGCCGCCTTCAGGAATTTCGGGAGGAAGCC
TTAAAGAGCCTGGCGCAGCTCATGCAGGCTTGCGAAGAGCGGGAGGAGCA
GCAGGAGCGGGGTCGTGAGGCGCTCAAGACTTCGGGTCAGCGCGGTAAGC
CTGTGCGAAACGCTGCCAAGCGCTTGGGGAAGTCGCGCACCGAGGCTCGT
AAACTTGGTGCTATGATTGCTCACTACCGATCCTTGCCTAGCGAGGATGG
GGAAGACGAGAAGGGAGGACAGATTGGTGGGACAGGGGAGGATGAGATGA
GTGTGCTGAAAGGGCTTCCATTTAACCCTGTGCCAATGATGGGCAGCAAC
CTCAACGAGGACAAGGGCGGACAGCAAGACGGAGCCGGGGAGGCGAAGGG
GCGGCAGGCCCGTTTGCACTTTTTGGAGGACGAAGAGGACCAGAATGAGG
AGGAGGACGTGTGGGATGACGACTATGATTTGGAGGAGGTGGAGGACGAG
GAGAAGAAATAA
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Coding sequence (CDS) from alignment at chr11:329067..331928+

>NO11G00830.1 ID=NO11G00830.1|Name=NO11G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at chr11:329067..331928+ (Nannochloropsis oceanica)
ATGAACACAGGAAGGGCCGTAGCGGACGAAAATGCAGAGGATGATTGCGC
CAGCTCGTTCGGGGGTGGGGAAGACTCGACGGCCCTGGAATTTCTGACGG
TTCCTATCGTGGCCCAGATGCACGTGTCCTCTCGCATCACCTTCCTCGAG
AGCAAGGGCTTCAACGAGACGGAGATCAGCGCTGCCTTGCACCTGACCGA
CGAGGAATTTCAAAGAAATCCACACATAATGCATCGCAGCCCACAGACGG
GCCCGGGAGCAGCAGTGGGAGAAGGACGAGAAGGAGACATGACGACAAAA
GAAGTAGCTGAGGGGTCGCACGCAGGCGACCAGTCCTGGAGCCCGTCCAG
TCCCAGCGCTAATTCGTGGTCGCATCTGATGGATGGGGGAACGCAACATA
CCGCGCCTTGGGGGGAGTCGTTGGCGCTGCAATGTCAGGCTCAATCCCAG
ACGCTGTCCCTCGTCCCTGCTGCAGGCTTCATCCCTTCGCGCTCGCTGCG
GCCGCCAGCTTTGAGAGGCCCGGTCCAAGATGACCGAGGCATAGGTGTGT
TGTCGACCATGATGGCGGCCGTAGAGGTGGAGAAGCTGACGTTGCAGAGC
AGAAATTCTTTTCGGGCGGAGATTGGGGGATGCCGTTTCCCGCATCAACA
CCCGCTGCAATCATTGTCGCAGCAGCATCAGCAGCAGCAAGAGACTTCAC
GCCCAGTGTCTCCCTCCGTCCCTGCACAGCACCCTTGCAATCAGCAGCAG
CAACAGAAAATGCAGCAGCTACAGCAACAACAACAGAAAATGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAAATGC
AGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGTGGAAATGCAG
CAGCATCAGCAGCATCAGCAGCAAGTGCAGCAAATGCAGCACGGTGGAGG
AGGACAGCGAGGATTCACCTTGTACCCTCCCTACCACCACCACCACCACC
TCCCGTCCCATCATCGTCACAAACACGCGTACGGCTCTCGCAGCGTGCCC
CGAGGTCGCATACATTACCCCCACCATCCCCAGCAGACGCAGCGGCAGGA
CCAACAACGCCTCCTCTTCCACCTGAAACGTCAACAACAACAACAACAAC
AACAACAACAAGAACAAGAACAAGAACAAGAACAGCAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACC
ACAACAACAACAACAACCACTACTCCAACAACAACCGCTGGCTGTGCCGC
AAGTAGGAAGGCAGGAATGTCACAGCGGCTGTGAAGGTTTATCTTCGCCT
TACTTCATTCCGCCTCAGCTGCACCCCCACCACCAAGAGCACCAGATCTC
GTTGGGTGGATACTATGATGGATCAAGGGGCATTCCGGCGGCGGATATTG
GCTTTCCATGGCATGCCCGTCGGCGTGAGACGCGCTGTACTCACAAAATT
TACAACATCGGAGAGCCCGACTATTTCTACAGGTATGACACAAGCAGCAG
CACAAGCAGCAGCAGCAGTAGCAGCAAGAACAATAGTAATTTCAACCCCG
AGCCTACCAGCACCAGCAGTACCCGCACCCGCAGCAGCAGCACCCGCAGC
AGCAGCAGCAGCAGCAGCACCAGCAGGCAGTACAGGCATTGTTCAGCGGG
CGGAGAGCAGCTGGAAGGTGCCAGCAGCAGCCCAACGCTGGAGGCAGGCG
GGGCTGGTGGTGGGAAGGAGAAGGTCGTGCCCAATATCTACCCGTCTTGG
GAGGCAGCGACACACAACCCGGTCACCAATAAGGGGAGTGACGATGCCTT
GCCCTGGTTTAAGACCATCGCCAGTGGTCGCGTCCAGAAGCATTTGATGC
GGTTCGTGAACAATTTCATCTCCCAGCAGGACCTGGAGGACGAGTTGGGG
TTGTATATGGCCGACATTTTCTACGAGACAGAGACCGGGCCGACCATGAT
GGCACTCTTCGACAAGCTAATATGTCGCGTAGCTGAGCGTTGCCCCAGCC
GCCTTCAGGAATTTCGGGAGGAAGCCTTAAAGAGCCTGGCGCAGCTCATG
CAGGCTTGCGAAGAGCGGGAGGAGCAGCAGGAGCGGGGTCGTGAGGCGCT
CAAGACTTCGGGTCAGCGCGGTAAGCCTGTGCGAAACGCTGCCAAGCGCT
TGGGGAAGTCGCGCACCGAGGCTCGTAAACTTGGTGCTATGATTGCTCAC
TACCGATCCTTGCCTAGCGAGGATGGGGAAGACGAGAAGGGAGGACAGAT
TGGTGGGACAGGGGAGGATGAGATGAGTGTGCTGAAAGGGCTTCCATTTA
ACCCTGTGCCAATGATGGGCAGCAACCTCAACGAGGACAAGGGCGGACAG
CAAGACGGAGCCGGGGAGGCGAAGGGGCGGCAGGCCCGTTTGCACTTTTT
GGAGGACGAAGAGGACCAGAATGAGGAGGAGGACGTGTGGGATGACGACT
ATGATTTGGAGGAGGTGGAGGACGAGGAGAAGAAATAA
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Synonyms
Publications