NO11G00790.1, NO11G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00790.1
Unique NameNO11G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr11:318607..320229 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:318607..320229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00790.1 vs.
Match: EWM25156.1 (hypothetical protein Naga_100016g61 [Nannochloropsis gaditana])

HSP 1 Score: 825.1 bits (2130), Expect = 1.300e-235
Identity = 421/538 (78.25%), Postives = 457/538 (84.94%), Query Frame = 0 
Query:    1 MADKQAIVEANVAAMSGREGYDVVIVCCSGEKQADYWQARLSAVRGQVLPASCKVLAVFEDWGGDGAGNGLGTLYAYQKAVIKAKSLYDGYELHAELVAKRASAALYHTAGKGTRLAPLPGAENNNKPGVKLPATLSVGGHDVPMTILEAVLKQTGVYAPMRKGRLSVFWGDQVFVPTVPVAAYAPAHHTDILCSLGPMPSAEEWEAKGLEKYGLIAVNSNEEAAQIEKVTHATAKRLLGSFGAVTKVGVSLGSFSLSASILVTLLEEFKTELIEKTAKLDTDPGLWMAFTLSKKAYIQLLEAKKIPPSESGPHFDRMQAMLARFRAARTGGEESGMDLFGAVDIGLGAYWWDYGQLKLYFMNNISVTHTDEESRLYRAFLGVPVGRRVRAEVGEGVGVDEESVLSAVRVKGGTIANSVLTNVSAKVVEAEGAVLVNVTARKVVAGRGAVLYNVVDDSDEGLVLGEGEVLVGVFDEAGRQQQMASHAEKDGGVWWKKEIRSGQPTFEQVYLANREVDVALIEAKSQAAHAKLREALFA 539
            M   Q  + ANVAAMSG EG+D VIVCCSGEKQA+YWQ+RL  VRGQVLPA+CKVLAVFEDW GDGAGNG GTLYAYQ A+ KAKSLY+GY+LHA+++AK+ S  LYHTAGKGTRLAPLPGAENNNKPGVKLPATLSVGG  VPMTILEAVLKQTGVYAPMRKGRLSVFWGDQVFVPTVPVAAY P HH DILCSLGPMPSAEEWEAKGL+KYGLIAVN++ EAAQIEKV HATA+ LL  FG VT+VGVSLGSFSLSA +LV  L+EF+ EL EKTAKLDTDPG+WMA TLSK +YIQLLEAKK P +ESGPHFDRM AM+ARFRA   G       LFGAVDIG GAYWWDYGQLKLYF NNISVTHTDEESRLYRAFLGVP  RR  A++ E V VD  SV+SA RV GGTI  SVLTNVSA  VEAEGAVLVNVTARKVVAGRGAVLYNVVD+S+EGLVLG  EVLVGVFD  G+QQ M S  EKDGGVWWKKEIR GQP+FE VYLANR+VDVAL+EA +   HA LR A+F+
Sbjct:    1 MTSGQTNLAANVAAMSGLEGFDAVIVCCSGEKQAEYWQSRLMTVRGQVLPATCKVLAVFEDWAGDGAGNGFGTLYAYQNAMTKAKSLYNGYDLHADMLAKKVSVGLYHTAGKGTRLAPLPGAENNNKPGVKLPATLSVGGEQVPMTILEAVLKQTGVYAPMRKGRLSVFWGDQVFVPTVPVAAYTPTHHADILCSLGPMPSAEEWEAKGLDKYGLIAVNADGEAAQIEKVKHATARALLADFGEVTRVGVSLGSFSLSAYLLVAFLDEFQKELTEKTAKLDTDPGMWMALTLSKDSYIQLLEAKKTPAAESGPHFDRMHAMVARFRATTEGAG----GLFGAVDIGQGAYWWDYGQLKLYFANNISVTHTDEESRLYRAFLGVPESRRTHAKIAEVVDVDPWSVISAARVDGGTIKQSVLTNVSAVSVEAEGAVLVNVTARKVVAGRGAVLYNVVDESEEGLVLGPKEVLVGVFDAHGKQQLMTSSFEKDGGVWWKKEIRDGQPSFEAVYLANRDVDVALVEATAHDMHATLRNAMFS 534
The following BLAST results are available for this feature:
BLAST of NO11G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25156.11.300e-23578.25hypothetical protein Naga_100016g61 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00790NO11G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00790.1NO11G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00790.1.cds1NO11G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00790.1 ID=NO11G00790.1|Name=NO11G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ATGGCCGACAAGCAAGCCATCGTGGAGGCCAACGTGGCGGCGATGAGTGG
GCGGGAGGGCTACGACGTGGTGATTGTGTGTTGCTCGGGTGAGAAGCAGG
CCGATTACTGGCAAGCCCGCTTGTCCGCTGTCCGAGGCCAAGTGCTACCG
GCGTCCTGCAAAGTTTTGGCTGTGTTTGAGGACTGGGGTGGGGACGGGGC
AGGTAACGGGCTTGGGACGTTGTATGCATACCAGAAGGCCGTGATCAAGG
CGAAGTCATTGTATGACGGCTATGAACTGCACGCCGAGCTGGTGGCGAAG
CGGGCGAGCGCTGCACTCTACCACACGGCCGGCAAGGGCACCCGCCTGGC
TCCCCTGCCAGGGGCGGAGAATAACAATAAACCGGGCGTAAAACTACCGG
CTACACTCTCGGTGGGTGGTCATGACGTGCCTATGACTATTTTGGAGGCA
GTGCTGAAGCAGACGGGTGTGTACGCGCCCATGCGCAAGGGCCGCTTGTC
CGTCTTCTGGGGAGATCAAGTGTTTGTCCCGACTGTGCCTGTCGCTGCAT
ATGCGCCCGCTCATCATACTGATATTTTGTGTTCTTTGGGCCCGATGCCC
TCGGCGGAAGAGTGGGAAGCGAAGGGTCTTGAGAAGTACGGGCTCATTGC
TGTTAATTCGAATGAGGAGGCGGCTCAGATTGAGAAGGTCACGCATGCCA
CGGCCAAGAGATTGCTTGGAAGCTTTGGGGCCGTGACGAAAGTGGGAGTA
TCGCTTGGTTCGTTCTCGTTGAGCGCTTCGATATTGGTGACGTTGCTGGA
GGAGTTCAAGACCGAGTTGATTGAGAAGACAGCGAAGCTGGACACAGACC
CGGGGCTGTGGATGGCATTCACCCTTTCTAAAAAGGCGTATATTCAGCTG
CTTGAAGCGAAGAAGATACCGCCTTCAGAGTCGGGGCCACATTTTGATCG
AATGCAGGCAATGCTGGCGAGATTCCGGGCAGCGAGAACGGGAGGGGAGG
AGAGCGGAATGGATTTGTTTGGTGCTGTGGACATTGGGCTAGGTGCTTAT
TGGTGGGATTACGGGCAATTGAAACTCTACTTCATGAACAATATAAGTGT
CACACACACGGATGAGGAGTCTCGGTTGTATCGTGCGTTTTTGGGCGTCC
CGGTGGGGAGGCGTGTGAGGGCGGAGGTAGGGGAGGGGGTGGGGGTGGAT
GAGGAGTCGGTGCTGTCGGCTGTCCGGGTGAAAGGCGGGACCATCGCAAA
CAGTGTGCTAACAAATGTGAGCGCCAAGGTAGTGGAGGCAGAGGGGGCGG
TCCTCGTGAACGTGACGGCGAGGAAGGTGGTGGCGGGGAGGGGGGCAGTG
CTTTATAACGTCGTGGACGACTCGGATGAGGGCTTGGTGCTGGGGGAGGG
AGAAGTGTTGGTGGGTGTTTTCGACGAGGCGGGGAGGCAGCAGCAGATGG
CTAGTCACGCTGAGAAGGATGGTGGTGTGTGGTGGAAGAAGGAGATTCGT
TCTGGCCAACCTACGTTTGAGCAGGTCTACCTGGCCAATCGCGAGGTGGA
TGTGGCGCTGATCGAGGCCAAATCGCAGGCGGCGCATGCCAAGCTACGGG
AGGCGTTGTTTGCTGAGGTGTAA
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protein sequence of NO11G00790.1

>NO11G00790.1-protein ID=NO11G00790.1-protein|Name=NO11G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MADKQAIVEANVAAMSGREGYDVVIVCCSGEKQADYWQARLSAVRGQVLP
ASCKVLAVFEDWGGDGAGNGLGTLYAYQKAVIKAKSLYDGYELHAELVAK
RASAALYHTAGKGTRLAPLPGAENNNKPGVKLPATLSVGGHDVPMTILEA
VLKQTGVYAPMRKGRLSVFWGDQVFVPTVPVAAYAPAHHTDILCSLGPMP
SAEEWEAKGLEKYGLIAVNSNEEAAQIEKVTHATAKRLLGSFGAVTKVGV
SLGSFSLSASILVTLLEEFKTELIEKTAKLDTDPGLWMAFTLSKKAYIQL
LEAKKIPPSESGPHFDRMQAMLARFRAARTGGEESGMDLFGAVDIGLGAY
WWDYGQLKLYFMNNISVTHTDEESRLYRAFLGVPVGRRVRAEVGEGVGVD
EESVLSAVRVKGGTIANSVLTNVSAKVVEAEGAVLVNVTARKVVAGRGAV
LYNVVDDSDEGLVLGEGEVLVGVFDEAGRQQQMASHAEKDGGVWWKKEIR
SGQPTFEQVYLANREVDVALIEAKSQAAHAKLREALFAEV*
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mRNA from alignment at chr11:318607..320229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00790.1 ID=NO11G00790.1|Name=NO11G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at chr11:318607..320229+ (Nannochloropsis oceanica)
ATGGCCGACAAGCAAGCCATCGTGGAGGCCAACGTGGCGGCGATGAGTGG
GCGGGAGGGCTACGACGTGGTGATTGTGTGTTGCTCGGGTGAGAAGCAGG
CCGATTACTGGCAAGCCCGCTTGTCCGCTGTCCGAGGCCAAGTGCTACCG
GCGTCCTGCAAAGTTTTGGCTGTGTTTGAGGACTGGGGTGGGGACGGGGC
AGGTAACGGGCTTGGGACGTTGTATGCATACCAGAAGGCCGTGATCAAGG
CGAAGTCATTGTATGACGGCTATGAACTGCACGCCGAGCTGGTGGCGAAG
CGGGCGAGCGCTGCACTCTACCACACGGCCGGCAAGGGCACCCGCCTGGC
TCCCCTGCCAGGGGCGGAGAATAACAATAAACCGGGCGTAAAACTACCGG
CTACACTCTCGGTGGGTGGTCATGACGTGCCTATGACTATTTTGGAGGCA
GTGCTGAAGCAGACGGGTGTGTACGCGCCCATGCGCAAGGGCCGCTTGTC
CGTCTTCTGGGGAGATCAAGTGTTTGTCCCGACTGTGCCTGTCGCTGCAT
ATGCGCCCGCTCATCATACTGATATTTTGTGTTCTTTGGGCCCGATGCCC
TCGGCGGAAGAGTGGGAAGCGAAGGGTCTTGAGAAGTACGGGCTCATTGC
TGTTAATTCGAATGAGGAGGCGGCTCAGATTGAGAAGGTCACGCATGCCA
CGGCCAAGAGATTGCTTGGAAGCTTTGGGGCCGTGACGAAAGTGGGAGTA
TCGCTTGGTTCGTTCTCGTTGAGCGCTTCGATATTGGTGACGTTGCTGGA
GGAGTTCAAGACCGAGTTGATTGAGAAGACAGCGAAGCTGGACACAGACC
CGGGGCTGTGGATGGCATTCACCCTTTCTAAAAAGGCGTATATTCAGCTG
CTTGAAGCGAAGAAGATACCGCCTTCAGAGTCGGGGCCACATTTTGATCG
AATGCAGGCAATGCTGGCGAGATTCCGGGCAGCGAGAACGGGAGGGGAGG
AGAGCGGAATGGATTTGTTTGGTGCTGTGGACATTGGGCTAGGTGCTTAT
TGGTGGGATTACGGGCAATTGAAACTCTACTTCATGAACAATATAAGTGT
CACACACACGGATGAGGAGTCTCGGTTGTATCGTGCGTTTTTGGGCGTCC
CGGTGGGGAGGCGTGTGAGGGCGGAGGTAGGGGAGGGGGTGGGGGTGGAT
GAGGAGTCGGTGCTGTCGGCTGTCCGGGTGAAAGGCGGGACCATCGCAAA
CAGTGTGCTAACAAATGTGAGCGCCAAGGTAGTGGAGGCAGAGGGGGCGG
TCCTCGTGAACGTGACGGCGAGGAAGGTGGTGGCGGGGAGGGGGGCAGTG
CTTTATAACGTCGTGGACGACTCGGATGAGGGCTTGGTGCTGGGGGAGGG
AGAAGTGTTGGTGGGTGTTTTCGACGAGGCGGGGAGGCAGCAGCAGATGG
CTAGTCACGCTGAGAAGGATGGTGGTGTGTGGTGGAAGAAGGAGATTCGT
TCTGGCCAACCTACGTTTGAGCAGGTCTACCTGGCCAATCGCGAGGTGGA
TGTGGCGCTGATCGAGGCCAAATCGCAGGCGGCGCATGCCAAGCTACGGG
AGGCGTTGTTTGCTGAGGTGTAA
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Coding sequence (CDS) from alignment at chr11:318607..320229+

>NO11G00790.1 ID=NO11G00790.1|Name=NO11G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr11:318607..320229+ (Nannochloropsis oceanica)
ATGGCCGACAAGCAAGCCATCGTGGAGGCCAACGTGGCGGCGATGAGTGG
GCGGGAGGGCTACGACGTGGTGATTGTGTGTTGCTCGGGTGAGAAGCAGG
CCGATTACTGGCAAGCCCGCTTGTCCGCTGTCCGAGGCCAAGTGCTACCG
GCGTCCTGCAAAGTTTTGGCTGTGTTTGAGGACTGGGGTGGGGACGGGGC
AGGTAACGGGCTTGGGACGTTGTATGCATACCAGAAGGCCGTGATCAAGG
CGAAGTCATTGTATGACGGCTATGAACTGCACGCCGAGCTGGTGGCGAAG
CGGGCGAGCGCTGCACTCTACCACACGGCCGGCAAGGGCACCCGCCTGGC
TCCCCTGCCAGGGGCGGAGAATAACAATAAACCGGGCGTAAAACTACCGG
CTACACTCTCGGTGGGTGGTCATGACGTGCCTATGACTATTTTGGAGGCA
GTGCTGAAGCAGACGGGTGTGTACGCGCCCATGCGCAAGGGCCGCTTGTC
CGTCTTCTGGGGAGATCAAGTGTTTGTCCCGACTGTGCCTGTCGCTGCAT
ATGCGCCCGCTCATCATACTGATATTTTGTGTTCTTTGGGCCCGATGCCC
TCGGCGGAAGAGTGGGAAGCGAAGGGTCTTGAGAAGTACGGGCTCATTGC
TGTTAATTCGAATGAGGAGGCGGCTCAGATTGAGAAGGTCACGCATGCCA
CGGCCAAGAGATTGCTTGGAAGCTTTGGGGCCGTGACGAAAGTGGGAGTA
TCGCTTGGTTCGTTCTCGTTGAGCGCTTCGATATTGGTGACGTTGCTGGA
GGAGTTCAAGACCGAGTTGATTGAGAAGACAGCGAAGCTGGACACAGACC
CGGGGCTGTGGATGGCATTCACCCTTTCTAAAAAGGCGTATATTCAGCTG
CTTGAAGCGAAGAAGATACCGCCTTCAGAGTCGGGGCCACATTTTGATCG
AATGCAGGCAATGCTGGCGAGATTCCGGGCAGCGAGAACGGGAGGGGAGG
AGAGCGGAATGGATTTGTTTGGTGCTGTGGACATTGGGCTAGGTGCTTAT
TGGTGGGATTACGGGCAATTGAAACTCTACTTCATGAACAATATAAGTGT
CACACACACGGATGAGGAGTCTCGGTTGTATCGTGCGTTTTTGGGCGTCC
CGGTGGGGAGGCGTGTGAGGGCGGAGGTAGGGGAGGGGGTGGGGGTGGAT
GAGGAGTCGGTGCTGTCGGCTGTCCGGGTGAAAGGCGGGACCATCGCAAA
CAGTGTGCTAACAAATGTGAGCGCCAAGGTAGTGGAGGCAGAGGGGGCGG
TCCTCGTGAACGTGACGGCGAGGAAGGTGGTGGCGGGGAGGGGGGCAGTG
CTTTATAACGTCGTGGACGACTCGGATGAGGGCTTGGTGCTGGGGGAGGG
AGAAGTGTTGGTGGGTGTTTTCGACGAGGCGGGGAGGCAGCAGCAGATGG
CTAGTCACGCTGAGAAGGATGGTGGTGTGTGGTGGAAGAAGGAGATTCGT
TCTGGCCAACCTACGTTTGAGCAGGTCTACCTGGCCAATCGCGAGGTGGA
TGTGGCGCTGATCGAGGCCAAATCGCAGGCGGCGCATGCCAAGCTACGGG
AGGCGTTGTTTGCTGAGGTGTAA
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Synonyms
Publications