NO11G00770.1, NO11G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00770.1
Unique NameNO11G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length321
Alignment locationchr11:314104..314424 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:314104..314424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00770.1 vs.
Match: EWM25087.1 (transmembrane protein 14 [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 1.700e-35
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 0 
Query:    1 MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            MGGSAHA+YAVG +LCAGGLAG+VR +SKPSL AGVGLG++M+VSG +IQ G+D RGHT ALI SGLVV GTLPRA+KTQK+VP A+AL GLVS  YQG+KV EW
Sbjct:    1 MGGSAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
The following BLAST results are available for this feature:
BLAST of NO11G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25087.11.700e-3574.29transmembrane protein 14 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00770NO11G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00770.1NO11G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00770.1.cds1NO11G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00770.1 ID=NO11G00770.1|Name=NO11G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=321bp
ATGGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGC
AGGAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTG
CTGGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAG
GATGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATT
GGTGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGC
CTGCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAA
AAGGTTCGGGAGTGGCGTTGA
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protein sequence of NO11G00770.1

>NO11G00770.1-protein ID=NO11G00770.1-protein|Name=NO11G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQ
DGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQ
KVREWR*
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mRNA from alignment at chr11:314104..314424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00770.1 ID=NO11G00770.1|Name=NO11G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=321bp|location=Sequence derived from alignment at chr11:314104..314424+ (Nannochloropsis oceanica)
ATGGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGC
AGGAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTG
CTGGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAG
GATGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATT
GGTGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGC
CTGCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAA
AAGGTTCGGGAGTGGCGTTGA
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Coding sequence (CDS) from alignment at chr11:314104..314424+

>NO11G00770.1 ID=NO11G00770.1|Name=NO11G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at chr11:314104..314424+ (Nannochloropsis oceanica)
ATGGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGC
AGGAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTG
CTGGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAG
GATGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATT
GGTGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGC
CTGCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAA
AAGGTTCGGGAGTGGCGTTGA
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Synonyms
Publications