NO11G00750.1, NO11G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00750.1
Unique NameNO11G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2749
Alignment locationchr11:307113..310103 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:307113..310103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00750.1 vs.
Match: CBJ28314.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 229.6 bits (584), Expect = 3.100e-56
Identity = 157/425 (36.94%), Postives = 215/425 (50.59%), Query Frame = 0
Query:   40 EIELSEQDSEITG----GDQRIPSTSFG--TLASSSSKAASSHLV------GASSNDSTPPTRRPSLQLMISHDDEDTSSRTPITEPRRLTFAEYRDHVVASFSRGLRLYNLSPRSARA---EALADSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWHIGAFILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITLRVILATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVIGGGLIFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCLSELLRRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFIIPVLQVFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPRQTT 450
            E  L+E  S  TG     D R    S G   LAS SS ++SSH        G  +  + PP R                              EY +H         R  N+SP        E  A+    E    +SS    H         ++  P     E M    W++GA +L+ GS+  F SF +APQS+LA+LGSVQF+SNV F + +L E +T R+IL T  II G  L + +SPH+   +  H L A YD  +   + + + I   +   Y+ +K+ K +GR   H+D V+P+ YA+ SA++GT SV+ AKCLSELL  T  G+NQL   +T+ V  +WL  T+FWL RMN AL +F G+FIIP LQVFWT F+++ GG YF+EF          F  GVL++F GV LL+PR  T
Sbjct:  174 EESLTESPSSTTGVSTSSDDRAAQHSRGRKALASPSSSSSSSHTAKRPPPKGGHAKGTGPPKRA----------------------------GEYDEHPGVR----KRPLNISPNQGGGGGEEGFAEKGGLEASGSSSSGGHGHGG------GAWEQPPTTPPEWMATALWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFQGENQLGSIFTYLVFAIWLGTTIFWLVRMNQALAMFHGLFIIPALQVFWTFFSVIDGGFYFEEFHTLHVLGGLGFAVGVLVVFCGVYLLAPRTQT 560          
The following BLAST results are available for this feature:
BLAST of NO11G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28314.13.100e-5636.94conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00750NO11G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00750.1NO11G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00750.1.cds1NO11G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00750.1.cds2NO11G00750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00750.1 ID=NO11G00750.1|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2749bp
ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT
CTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG
ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT
GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAACAGCAGCACCGGCGGAGC
CAGGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTT
GGGGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAA
TTTAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCG
AATTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGCGCATCCCT
TCCACTTCTTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTC
ACACCTGGTGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCC
CCTCCTTGCAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGT
ACCCCCATTACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCA
TGTTGTGGCATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCC
GCTCTGCCCGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGAC
GACGGGACCAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACT
GTTATCCAGTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAA
AGAAGTTCTGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGT
ACCTTTGTCTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGG
CTCCGTCCAATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAG
AGAAAATCACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGC
CAGATCCTGATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGC
ACACTCCCTCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCG
TTTTGGTAGTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAA
AAAAGGAAGGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCC
GGTGACGTATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGC
AGGCCAAGTGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAAC
CAGCTCAAGTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTT
GACAGTGTTCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATG
GTATTTTTATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATT
ATGACAGGGGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAAT
GTTGGCATTGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCC
TCCTTTCCCCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAG
ATTCTCGACGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGA
AGAAAGCAGCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCG
ACAAAGTAAACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGAC
GGGCATGGGAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGC
GGCGCACCAGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGG
CTATGACGAATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCG
CATCTGATAGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGG
AGACATGGCTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATG
CCGATTATAGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCT
AAGCCGCTACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGT
AATTACTGGATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACA
AAAATAATTCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAAC
GACCAAGATCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTC
CGAGGATCCCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGA
CGCCCATGGGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGAC
TGTGTTGGCATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTT
CTGCATCTGTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAAT
CGCAATATCATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATAT
CGACTGTGACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAA
AGGATCGATGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAA
ACTGTGTAGGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGT
AGAGACGTGGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCC
AGCGAACGTTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCAGTA
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protein sequence of NO11G00750.1

>NO11G00750.1-protein ID=NO11G00750.1-protein|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MGVPTWSVGVIINVIGSISINFGTNLMKFAHNEKNRQRKEIELSEQDSEI
TGGDQRIPSTSFGTLASSSSKAASSHLVGASSNDSTPPTRRPSLQLMISH
DDEDTSSRTPITEPRRLTFAEYRDHVVASFSRGLRLYNLSPRSARAEALA
DSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWHIGAF
ILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITLRVIL
ATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVIGGGL
IFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCLSELL
RRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFIIPVLQ
VFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPRQTTV
EAEELFEEILDEEGASSWRGMDTEEESSPSSSNSPPPPSTGDKVNSLDDP
GQINKGHDGHGKGSGRQQQAPQALAAHQANIIHPLRGISAAAMTNGDCTG
EEEYPWPSHLIGISRSPFQALVADGDMADAADAAASDSGGDADYSNMTLS
SRGGESPSKPLPPQIQSKPPTNTKVITGSAACRASSLDVLDKNNSCLFSF
CTLPFIANDQDLTNFLAHVTPTLLSEDPTSTRSVCSSSHRTTPMGECEKG
GQANVVPDCVGINFSCVA*
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mRNA from alignment at chr11:307113..310103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00750.1 ID=NO11G00750.1|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2991bp|location=Sequence derived from alignment at chr11:307113..310103+ (Nannochloropsis oceanica)
ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT CTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAGTGAGTCCTTCTTCCAATT CTTTCTTGTGGTCAACGGGTTTTCCGATCTCAATGCGGTAGCATTCCGGC CAGGCAATGCGGAGATACAGACTGATATGCACACATTCCCGCGCGTTAAC GCCACTGTACTATCTTCATTCATCATAAGACAGCAGCACCGGCGGAGCCA GGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTTGG GGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAATT TAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCGAA TTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGGTATGAATAAC GAAACGAATAGACAGACCACTGTCTTCCAACACTTGTGCTATATTACTTT TCATTCTCGTTCACACACTCCAACAACCCACAGCGCATCCCTTCCACTTC TTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTCACACCTGG TGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCCCCTCCTTG CAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCAT TACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGG CATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCC CGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGAC CAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCA GTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTC TGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGT CTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCC AATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATC ACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCT GATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCC TCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTA GTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAA GGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGT ATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAG TGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAA GTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGT TCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTT ATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGG GGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCAT TGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCC CCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGA CGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCA GCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTA AACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGG GAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACC AGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACG AATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGAT AGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGG CTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTAT AGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCT ACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTG GATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAAT TCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGA TCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATC CCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATG GGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGG CATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTTCTGCATCT GTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAATCGCAATAT CATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATATCGACTGTG ACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAAAGGATCGA TGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAAACTGTGTA GGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGTAGAGACGT GGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCCAGCGAACG TTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCAGTA
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Coding sequence (CDS) from alignment at chr11:307113..310103+

>NO11G00750.1 ID=NO11G00750.1|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at chr11:307113..310103+ (Nannochloropsis oceanica)
ATGGGGGTCCCAACATGGAGCGTTGGGGTGATTATCAACGTCATAGGGTC
CATCTCAATCAATTTCGGGACCAATTTAATGAAGTTTGCGCACAATGAGA
AGAATCGACAGCGAAAAGAAATCGAATTGTCCGAGCAAGACAGTGAAATC
ACAGGCGGTGACCAGCGCATCCCTTCCACTTCTTTCGGCACTCTTGCATC
CAGTAGCAGCAAGGCCGCCAGTTCACACCTGGTGGGTGCAAGCAGCAACG
ACTCTACCCCACCAACCAGGCGCCCCTCCTTGCAATTAATGATCAGCCAC
GACGACGAGGACACGTCGTCGCGTACCCCCATTACCGAGCCTCGAAGACT
GACCTTTGCAGAGTATCGAGATCATGTTGTGGCATCCTTTAGTCGAGGCC
TGCGGCTTTACAACCTTAGTCCCCGCTCTGCCCGAGCGGAGGCCTTGGCC
GACAGCAGCAACGGTGAGCCGGACGACGGGACCAGCAGCTCTACATCTCG
ACATTATTGGAGGCCAAGACGACTGTTATCCAGTTATGTTACTCCAAGTG
GAGATGTCAAGGAATTGATGCGAAAGAAGTTCTGGCACATCGGCGCCTTC
ATCCTCTTGGTTGGCAGCATCTGTACCTTTGTCTCCTTCTCCTACGCCCC
CCAGTCCATGCTCGCGGCGTTGGGCTCCGTCCAATTCCTGAGTAATGTTT
TTTTTGCCCGGTTCGTCCTCTCAGAGAAAATCACGCTTCGAGTTATCCTG
GCCACGTGTATCATCATCGCAGGCCAGATCCTGATTGTGGTCTACTCTCC
CCATAAGAGCCGTGAATACGATGCACACTCCCTCATAGCTCTCTATGACC
GGATCTTCCTCATCTACATGGGCGTTTTGGTAGTGATAGGAGGAGGCTTA
ATCTTCATTTATCGACATTACAAAAAAAGGAAGGTGGAGGGAAGGGAGCT
GTCCCACACAGACACGGTGTTGCCGGTGACGTATGCGATGACCTCAGCCA
TGATCGGCACCTTCAGTGTGCTGCAGGCCAAGTGCCTGTCCGAATTGTTG
AGGCGGACCTTAAATGGAGACAACCAGCTCAAGTTCTTTTATACTTGGTT
TGTGCTATTGGTATGGTTGTTCTTGACAGTGTTCTGGTTGCATCGGATGA
ACACAGCTTTGCGCCTGTTCGATGGTATTTTTATCATTCCCGTGCTGCAG
GTCTTCTGGACTCTATTTGCCATTATGACAGGGGGCATTTATTTCCAGGA
ATTTCAAGAATACAGCTCCAAAATGTTGGCATTGTTTGTTTTCGGCGTCT
TGATCATCTTTTCAGGCGTTGCCCTCCTTTCCCCCCGGCAGACGACGGTG
GAGGCAGAGGAGTTGTTCGAGGAGATTCTCGACGAGGAAGGCGCATCCTC
CTGGAGAGGCATGGACACAGAGGAAGAAAGCAGCCCTTCTTCATCCAATA
GCCCTCCTCCCCCGTCAACGGGCGACAAAGTAAACTCCCTTGACGACCCA
GGGCAGATAAATAAGGGGCATGACGGGCATGGGAAGGGCAGCGGCAGGCA
GCAGCAAGCACCACAGGCGCTGGCGGCGCACCAGGCCAACATCATCCATC
CATTGCGTGGTATATCGGCAGCGGCTATGACGAATGGTGATTGCACCGGA
GAGGAGGAATATCCATGGCCATCGCATCTGATAGGCATTTCTCGATCCCC
CTTTCAAGCACTCGTCGCCGATGGAGACATGGCTGATGCTGCTGATGCTG
CCGCCAGTGATTCTGGTGGGGATGCCGATTATAGTAATATGACTCTTTCC
TCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCTACCACCTCAGATCCAGAG
CAAGCCCCCTACAAACACGAAAGTAATTACTGGATCGGCGGCGTGCAGAG
CATCGAGCCTCGACGTACTAGACAAAAATAATTCGTGTCTTTTCTCCTTC
TGCACCCTGCCCTTTATTGCCAACGACCAAGATCTCACCAACTTTTTGGC
CCACGTAACCCCTACCCTGCTGTCCGAGGATCCCACCTCAACCCGTTCAG
TCTGCTCTTCTTCGCATCGGACGACGCCCATGGGTGAATGCGAAAAGGGT
GGGCAAGCAAATGTGGTCCCCGACTGTGTTGGCATCAACTTTTCGTGTGT
CGCGTGA
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Synonyms
Publications