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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:307113..310103 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00750.1 vs.
Match: CBJ28314.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 229.6 bits (584), Expect = 3.100e-56 Identity = 157/425 (36.94%), Postives = 215/425 (50.59%), Query Frame = 0
Query: 40 EIELSEQDSEITG----GDQRIPSTSFG--TLASSSSKAASSHLV------GASSNDSTPPTRRPSLQLMISHDDEDTSSRTPITEPRRLTFAEYRDHVVASFSRGLRLYNLSPRSARA---EALADSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWHIGAFILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITLRVILATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVIGGGLIFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCLSELLRRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFIIPVLQVFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPRQTT 450
E L+E S TG D R S G LAS SS ++SSH G + + PP R EY +H R N+SP E A+ E +SS H ++ P E M W++GA +L+ GS+ F SF +APQS+LA+LGSVQF+SNV F + +L E +T R+IL T II G L + +SPH+ + H L A YD + + + + I + Y+ +K+ K +GR H+D V+P+ YA+ SA++GT SV+ AKCLSELL T G+NQL +T+ V +WL T+FWL RMN AL +F G+FIIP LQVFWT F+++ GG YF+EF F GVL++F GV LL+PR T
Sbjct: 174 EESLTESPSSTTGVSTSSDDRAAQHSRGRKALASPSSSSSSSHTAKRPPPKGGHAKGTGPPKRA----------------------------GEYDEHPGVR----KRPLNISPNQGGGGGEEGFAEKGGLEASGSSSSGGHGHGG------GAWEQPPTTPPEWMATALWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFQGENQLGSIFTYLVFAIWLGTTIFWLVRMNQALAMFHGLFIIPALQVFWTFFSVIDGGFYFEEFHTLHVLGGLGFAVGVLVVFCGVYLLAPRTQT 560
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00750.1 ID=NO11G00750.1|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2749bp ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT CTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAACAGCAGCACCGGCGGAGC CAGGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTT GGGGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAA TTTAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCG AATTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGCGCATCCCT TCCACTTCTTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTC ACACCTGGTGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCC CCTCCTTGCAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGT ACCCCCATTACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCA TGTTGTGGCATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCC GCTCTGCCCGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGAC GACGGGACCAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACT GTTATCCAGTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAA AGAAGTTCTGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGT ACCTTTGTCTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGG CTCCGTCCAATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAG AGAAAATCACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGC CAGATCCTGATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGC ACACTCCCTCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCG TTTTGGTAGTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAA AAAAGGAAGGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCC GGTGACGTATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGC AGGCCAAGTGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAAC CAGCTCAAGTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTT GACAGTGTTCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATG GTATTTTTATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATT ATGACAGGGGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAAT GTTGGCATTGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCC TCCTTTCCCCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAG ATTCTCGACGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGA AGAAAGCAGCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCG ACAAAGTAAACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGAC GGGCATGGGAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGC GGCGCACCAGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGG CTATGACGAATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCG CATCTGATAGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGG AGACATGGCTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATG CCGATTATAGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCT AAGCCGCTACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGT AATTACTGGATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACA AAAATAATTCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAAC GACCAAGATCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTC CGAGGATCCCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGA CGCCCATGGGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGAC TGTGTTGGCATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTT CTGCATCTGTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAAT CGCAATATCATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATAT CGACTGTGACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAA AGGATCGATGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAA ACTGTGTAGGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGT AGAGACGTGGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCC AGCGAACGTTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCAGTA back to topprotein sequence of NO11G00750.1 >NO11G00750.1-protein ID=NO11G00750.1-protein|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp MGVPTWSVGVIINVIGSISINFGTNLMKFAHNEKNRQRKEIELSEQDSEI TGGDQRIPSTSFGTLASSSSKAASSHLVGASSNDSTPPTRRPSLQLMISH DDEDTSSRTPITEPRRLTFAEYRDHVVASFSRGLRLYNLSPRSARAEALA DSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWHIGAF ILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITLRVIL ATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVIGGGL IFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCLSELL RRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFIIPVLQ VFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPRQTTV EAEELFEEILDEEGASSWRGMDTEEESSPSSSNSPPPPSTGDKVNSLDDP GQINKGHDGHGKGSGRQQQAPQALAAHQANIIHPLRGISAAAMTNGDCTG EEEYPWPSHLIGISRSPFQALVADGDMADAADAAASDSGGDADYSNMTLS SRGGESPSKPLPPQIQSKPPTNTKVITGSAACRASSLDVLDKNNSCLFSF CTLPFIANDQDLTNFLAHVTPTLLSEDPTSTRSVCSSSHRTTPMGECEKG GQANVVPDCVGINFSCVA* back to topmRNA from alignment at chr11:307113..310103+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00750.1 ID=NO11G00750.1|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2991bp|location=Sequence derived from alignment at chr11:307113..310103+ (Nannochloropsis oceanica) ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT
CTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG
ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT
GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAGTGAGTCCTTCTTCCAATT
CTTTCTTGTGGTCAACGGGTTTTCCGATCTCAATGCGGTAGCATTCCGGC
CAGGCAATGCGGAGATACAGACTGATATGCACACATTCCCGCGCGTTAAC
GCCACTGTACTATCTTCATTCATCATAAGACAGCAGCACCGGCGGAGCCA
GGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTTGG
GGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAATT
TAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCGAA
TTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGGTATGAATAAC
GAAACGAATAGACAGACCACTGTCTTCCAACACTTGTGCTATATTACTTT
TCATTCTCGTTCACACACTCCAACAACCCACAGCGCATCCCTTCCACTTC
TTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTCACACCTGG
TGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCCCCTCCTTG
CAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCAT
TACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGG
CATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCC
CGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGAC
CAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCA
GTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTC
TGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGT
CTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCC
AATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATC
ACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCT
GATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCC
TCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTA
GTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAA
GGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGT
ATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAG
TGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAA
GTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGT
TCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTT
ATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGG
GGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCAT
TGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCC
CCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGA
CGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCA
GCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTA
AACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGG
GAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACC
AGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACG
AATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGAT
AGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGG
CTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTAT
AGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCT
ACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTG
GATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAAT
TCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGA
TCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATC
CCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATG
GGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGG
CATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTTCTGCATCT
GTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAATCGCAATAT
CATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATATCGACTGTG
ACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAAAGGATCGA
TGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAAACTGTGTA
GGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGTAGAGACGT
GGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCCAGCGAACG
TTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCAGTA back to topCoding sequence (CDS) from alignment at chr11:307113..310103+ >NO11G00750.1 ID=NO11G00750.1|Name=NO11G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at chr11:307113..310103+ (Nannochloropsis oceanica) ATGGGGGTCCCAACATGGAGCGTTGGGGTGATTATCAACGTCATAGGGTC CATCTCAATCAATTTCGGGACCAATTTAATGAAGTTTGCGCACAATGAGA AGAATCGACAGCGAAAAGAAATCGAATTGTCCGAGCAAGACAGTGAAATC ACAGGCGGTGACCAGCGCATCCCTTCCACTTCTTTCGGCACTCTTGCATC CAGTAGCAGCAAGGCCGCCAGTTCACACCTGGTGGGTGCAAGCAGCAACG ACTCTACCCCACCAACCAGGCGCCCCTCCTTGCAATTAATGATCAGCCAC GACGACGAGGACACGTCGTCGCGTACCCCCATTACCGAGCCTCGAAGACT GACCTTTGCAGAGTATCGAGATCATGTTGTGGCATCCTTTAGTCGAGGCC TGCGGCTTTACAACCTTAGTCCCCGCTCTGCCCGAGCGGAGGCCTTGGCC GACAGCAGCAACGGTGAGCCGGACGACGGGACCAGCAGCTCTACATCTCG ACATTATTGGAGGCCAAGACGACTGTTATCCAGTTATGTTACTCCAAGTG GAGATGTCAAGGAATTGATGCGAAAGAAGTTCTGGCACATCGGCGCCTTC ATCCTCTTGGTTGGCAGCATCTGTACCTTTGTCTCCTTCTCCTACGCCCC CCAGTCCATGCTCGCGGCGTTGGGCTCCGTCCAATTCCTGAGTAATGTTT TTTTTGCCCGGTTCGTCCTCTCAGAGAAAATCACGCTTCGAGTTATCCTG GCCACGTGTATCATCATCGCAGGCCAGATCCTGATTGTGGTCTACTCTCC CCATAAGAGCCGTGAATACGATGCACACTCCCTCATAGCTCTCTATGACC GGATCTTCCTCATCTACATGGGCGTTTTGGTAGTGATAGGAGGAGGCTTA ATCTTCATTTATCGACATTACAAAAAAAGGAAGGTGGAGGGAAGGGAGCT GTCCCACACAGACACGGTGTTGCCGGTGACGTATGCGATGACCTCAGCCA TGATCGGCACCTTCAGTGTGCTGCAGGCCAAGTGCCTGTCCGAATTGTTG AGGCGGACCTTAAATGGAGACAACCAGCTCAAGTTCTTTTATACTTGGTT TGTGCTATTGGTATGGTTGTTCTTGACAGTGTTCTGGTTGCATCGGATGA ACACAGCTTTGCGCCTGTTCGATGGTATTTTTATCATTCCCGTGCTGCAG GTCTTCTGGACTCTATTTGCCATTATGACAGGGGGCATTTATTTCCAGGA ATTTCAAGAATACAGCTCCAAAATGTTGGCATTGTTTGTTTTCGGCGTCT TGATCATCTTTTCAGGCGTTGCCCTCCTTTCCCCCCGGCAGACGACGGTG GAGGCAGAGGAGTTGTTCGAGGAGATTCTCGACGAGGAAGGCGCATCCTC CTGGAGAGGCATGGACACAGAGGAAGAAAGCAGCCCTTCTTCATCCAATA GCCCTCCTCCCCCGTCAACGGGCGACAAAGTAAACTCCCTTGACGACCCA GGGCAGATAAATAAGGGGCATGACGGGCATGGGAAGGGCAGCGGCAGGCA GCAGCAAGCACCACAGGCGCTGGCGGCGCACCAGGCCAACATCATCCATC CATTGCGTGGTATATCGGCAGCGGCTATGACGAATGGTGATTGCACCGGA GAGGAGGAATATCCATGGCCATCGCATCTGATAGGCATTTCTCGATCCCC CTTTCAAGCACTCGTCGCCGATGGAGACATGGCTGATGCTGCTGATGCTG CCGCCAGTGATTCTGGTGGGGATGCCGATTATAGTAATATGACTCTTTCC TCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCTACCACCTCAGATCCAGAG CAAGCCCCCTACAAACACGAAAGTAATTACTGGATCGGCGGCGTGCAGAG CATCGAGCCTCGACGTACTAGACAAAAATAATTCGTGTCTTTTCTCCTTC TGCACCCTGCCCTTTATTGCCAACGACCAAGATCTCACCAACTTTTTGGC CCACGTAACCCCTACCCTGCTGTCCGAGGATCCCACCTCAACCCGTTCAG TCTGCTCTTCTTCGCATCGGACGACGCCCATGGGTGAATGCGAAAAGGGT GGGCAAGCAAATGTGGTCCCCGACTGTGTTGGCATCAACTTTTCGTGTGT CGCGTGA back to top
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