NO11G00700.1, NO11G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00700.1
Unique NameNO11G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2739
Alignment locationchr11:290288..293298 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:290288..293298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00700.1 vs.
Match: EWM25099.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 3.200e-29
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 0 
Query:    1 MGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIF 77
            MGLACLMAFSAVNGILKIAQ +LDT FVALYMFIFA+ILFFFELCQFKYVA+IDNVFRRNFGFMYGSRGKALYIIF
Sbjct:   44 MGLACLMAFSAVNGILKIAQLQLDTFFVALYMFIFAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIF 119
The following BLAST results are available for this feature:
BLAST of NO11G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25099.13.200e-2993.42Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00700NO11G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00700.1NO11G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00700.1.cds1NO11G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00700.1.cds2NO11G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00700.1.cds3NO11G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00700.1 ID=NO11G00700.1|Name=NO11G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp
GCCCAATCTAATGCGAGTCTTGCTTTCGAAATTTCTTTTAACCTGCACCA
CTTTTTCAGTGTTCCGCCCTCCATTGCATCCTCCTGGTTAAGATAATTGC
CTAAATCTTCCTCCTTCCATTTCCCCTTTTCCCCCCACTCTGAATCCCTT
CATCATCCCATATCAACCTTCCTCTCCGCTTTTCCACGCTGGCACCTGAT
GGATTGCCTTCATCCCCTTTCATTGGATAATGCCATCATGACCCGATTTA
CACCTTTTCGTCCTCTATCAACTCTTAGCAGACCTCACTCCCAGCTCATG
ACTCCCCTTTTCCTCCCTCCATAAACCTACTCACACATACACAAGCTACG
CCTTGGACGCTTTGGTGCTCTCCACCTTGGTCCCCCCCATGTACTCTGAC
AACAGTCTTGGCGTGTTAAACCAGGAAGACAGTCCTAATCCTCCGTCCAC
CGGTAACAACGTCCCCGTCATGTAGGAGGAGGCGGGCGAGGCAAGAAACA
ACACGGCTTGTGCCACTTCTTCCGGCGTGCCATTTCGACCCATCGGGATC
GCATTAGCGCGCAACGAGGCATATTCACCAAGATCGCGGCCTTTTTTCAC
GGCCATTACGTCCAATGCTTTGGTGTGGATGCATCCGGGCAGCACCCCAT
TCACGCGGAAACCGTCTTGTCGATGCTTGAACGCCAGAGTCTCAACCAAT
GCGTTCTGTGCCGCCTTGGCCAGATTAAAAGGAGCAGTGTCAGGCCATGG
ACAGTGCGCGGCAAGGGAGCTGACCATCACTACAGACCCGCCACCGTTGG
GGGCCTGGCTGAGAAAGGGGGCGGCGGCCGCGACAAGAAACATTGGGGAG
AGCACGGCCATGTCGTACATGAGATGATAGCTCGCGGCATCCGTCGGATC
CAGTCCCAAGTACTCTGAGTAGCCATTTCCCCCACTGACAATTAATACAT
CTAGCCCCCCACCAAGCTTATCGACGGCGGCTCCGACAAGCTCTGCCATC
GTCTCGGGCTTTTTCAGATTGCCTTCCAAGCCCGACAAGCCTGCGGGGAC
GGCGCTACCCATCTTGGCAAGGTCCCGGCCAACCACGACGACATGCACGG
CGCCCGCAGCCAGACAAGCCAAAGCTGAGACGTAGCCAACGGATGCGGGT
TCAGTCCCGCCGGTCACGAGGCAGCGTTTGCCCTTGAGATCCGGGGCCAT
ACTGGTTGAAGGAATAGGGAGCAAGCCCAGGCAGGCTTGTACTAGGTAAC
TGTGTTCTTGTGTTTTTTGTGGGCTTAGGGCAAGATAAGTGATTTGACAT
CAAGCATATTGGCAAAGAGGCTCTGACGCTTGACGCTTGACACAAATGGG
TAGGGCATCTTTGCTATTTATTTTCGTTGGCTACGCCAGCAATAGGGCTC
GAACATGGACTGTCTCGGTGGTCGAGCAGGAGAAGCGAGGCGGTCAAACA
CCACTATCACTCATCCAAAACAAACTAAAAAAAAATCTTGATACATATCA
CGCAATTACACATTATATCGCATCCTTCGACTGAGGACTCTCTTGCTTGG
GCGTGCCGTCCTTAAGGAACACATGGACTTTACAGCCGTTGCCCACAACT
GCTGAATCGCCAACCAGCGGCTTCTTGCCCAGCAGTCATTCTGACTGCAC
GCATGATTATAAAATATCCCCACGCCCTCATTCACACGCGCACACATTCA
CAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCATGGCGAAC
GCACCGTCATGGCTCGATGTACGTACAAAAGGAACACGTTATCGACGATG
TAATCGTCATCATCCTCCCTCCCTTCCTTTCCCTACACCGAAACCCACAG
CAAGACCAACAACAAGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCTC
CTCACCCACACCCAGCATTCAAGAAAGAGTTGAAAACTATCTGTAAGTGA
GTCGCTTCTCCTCCTCTACAGACGGGGGGGGGAAAGAGAAAGAGGAGCGA
AAGGAGACAGAAACTGGCTTCAGAGTTTTGACGAGGAGAAAAAGGGGGCA
GTGAGCATCAAATTTCTGGAAAAGGGTCCTCGAAGAACGATGGATAGCTG
AGATATCACCGACGCCGCTCAACACCCCTTCCCTTCCCGTCGTCTCCCTC
CAACCCCAGACCGGCCTGTGCTAAATACGTCATTCCCTTGTCAAGGGTTA
TCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCAATGGCATT
TTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCCTTATACAT
GTTCATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCAGTTCAAAT
ACGTCGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCTTCATGTAT
GGGTCCAGAGGCAAGGCTCTGTACATCATCTTCATTGCCTTTCTCAACTT
CGGCCTAGTCAGCACGGGTGTCCTCCAATTTGCGACTGGCATCGTGCTGG
CTGTCGATGGGTGCCTTATGCTTTTTGCTACCTTTAGATACCCGTCGCTC
TTTGCAGGAAATACACCAGCACAGCCGTCGGCAAGCTCGTCGCACCCAGC
GGCGGCAGCCTCGAAGGGACCAGGGCAGGTGTAGAGAGGCCGGGAAGTGG
GAGAGAGGAAAGGGAGGAAGGGAGGGCATTGTTGTTGGAATGTAAATTTA
AAGAACAGAAAAATTAAGAAAGAAGGGCATGAGGCATTG
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protein sequence of NO11G00700.1

>NO11G00700.1-protein ID=NO11G00700.1-protein|Name=NO11G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MGLACLMAFSAVNGILKIAQFRLDTSFVALYMFIFASILFFFELCQFKYV
AWIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGVLQFATGIVLAV
DGCLMLFATFRYPSLFAGNTPAQPSASSSHPAAAASKGPGQV*
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mRNA from alignment at chr11:290288..293298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00700.1 ID=NO11G00700.1|Name=NO11G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=3011bp|location=Sequence derived from alignment at chr11:290288..293298+ (Nannochloropsis oceanica)
GCCCAATCTAATGCGAGTCTTGCTTTCGAAATTTCTTTTAACCTGCACCA
CTTTTTCAGTGTTCCGCCCTCCATTGCATCCTCCTGGTTAAGATAATTGC
CTAAATCTTCCTCCTTCCATTTCCCCTTTTCCCCCCACTCTGAATCCCTT
CATCATCCCATATCAACCTTCCTCTCCGCTTTTCCACGCTGGCACCTGAT
GGATTGCCTTCATCCCCTTTCATTGGATAATGCCATCATGACCCGATTTA
CACCTTTTCGTCCTCTATCAACTCTTAGCAGACCTCACTCCCAGCTCATG
ACTCCCCTTTTCCTCCCTCCATAAACCTACTCACACATACACAAGCTACG
CCTTGGACGCTTTGGTGCTCTCCACCTTGGTCCCCCCCATGTACTCTGAC
AACAGTCTTGGCGTGTTAAACCAGGAAGACAGTCCTAATCCTCCGTCCAC
CGGTAACAACGTCCCCGTCATGTAGGAGGAGGCGGGCGAGGCAAGAAACA
ACACGGCTTGTGCCACTTCTTCCGGCGTGCCATTTCGACCCATCGGGATC
GCATTAGCGCGCAACGAGGCATATTCACCAAGATCGCGGCCTTTTTTCAC
GGCCATTACGTCCAATGCTTTGGTGTGGATGCATCCGGGCAGCACCCCAT
TCACGCGGAAACCGTCTTGTCGATGCTTGAACGCCAGAGTCTCAACCAAT
GCGTTCTGTGCCGCCTTGGCCAGATTAAAAGGAGCAGTGTCAGGCCATGG
ACAGTGCGCGGCAAGGGAGCTGACCATCACTACAGACCCGCCACCGTTGG
GGGCCTGGCTGAGAAAGGGGGCGGCGGCCGCGACAAGAAACATTGGGGAG
AGCACGGCCATGTCGTACATGAGATGATAGCTCGCGGCATCCGTCGGATC
CAGTCCCAAGTACTCTGAGTAGCCATTTCCCCCACTGACAATTAATACAT
CTAGCCCCCCACCAAGCTTATCGACGGCGGCTCCGACAAGCTCTGCCATC
GTCTCGGGCTTTTTCAGATTGCCTTCCAAGCCCGACAAGCCTGCGGGGAC
GGCGCTACCCATCTTGGCAAGGTCCCGGCCAACCACGACGACATGCACGG
CGCCCGCAGCCAGACAAGCCAAAGCTGAGACGTAGCCAACGGATGCGGGT
TCAGTCCCGCCGGTCACGAGGCAGCGTTTGCCCTTGAGATCCGGGGCCAT
ACTGGTTGAAGGAATAGGGAGCAAGCCCAGGCAGGCTTGTACTAGGTAAC
TGTGTTCTTGTGTTTTTTGTGGGCTTAGGGCAAGATAAGTGATTTGACAT
CAAGCATATTGGCAAAGAGGCTCTGACGCTTGACGCTTGACACAAATGGG
TAGGGCATCTTTGCTATTTATTTTCGTTGGCTACGCCAGCAATAGGGCTC
GAACATGGACTGTCTCGGTGGTCGAGCAGGAGAAGCGAGGCGGTCAAACA
CCACTATCACTCATCCAAAACAAACTAAAAAAAAATCTTGATACATATCA
CGCAATTACACATTATATCGCATCCTTCGACTGAGGACTCTCTTGCTTGG
GCGTGCCGTCCTTAAGGAACACATGGACTTTACAGCCGTTGCCCACAACT
GCTGAATCGCCAACCAGCGGCTTCTTGCCCAGCAGTCATTCTGACTGCAC
GCATGATTATAAAATATCCCCACGCCCTCATTCACACGCGCACACATTCA
CAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCATGGCGAAC
GCACCGTCATGGCTCGATGTACGTACAAAAGGAACACGTTATCGACGATG
TAATCGTCATCATCCTCCCTCCCTTCCTTTCCCTACACCGAAACCCACAG
CAAGACCAACAACAAGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCTC
CTCACCCACACCCAGCATTCAAGAAAGAGTTGAAAACTATCTGTAAGTGA
GTCGCTTCTCCTCCTCTACAGACGGGGGGGGGAAAGAGAAAGAGGAGCGA
AAGGAGACAGAAACTGGCTTCAGAGTTTTGACGAGGAGAAAAAGGGGGCA
GTGAGCATCAAATTTCTGGAAAAGGGTCCTCGAAGAACGATGGATAGCTG
AGATATCACCGACGCCGCTCAACACCCCTTCCCTTCCCGTCGTCTCCCTC
CAACCCCAGACCGGCCTGTGCTAAATACGTCATTCCCTTGTCAAGGGTTA
TCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCAATGGCATT
TTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCCTTATACAT
GTTGTGAGTAGGACAGGAAAAGGAGGTGGAGGAAGGGGTGTGTGGGAGAA
GGAAGGACGTCTAGTCTGCATAACCTGATCTGCTTCTCGACCTCTTCGTG
TCCTTGCATAGGCCCTGATGATTCTTTTGTTTCTTTTCTTCTCACACAGC
ATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCAGTTCAAATACGT
CGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCTTCATGTATGGGT
CCAGAGGCAAGGCTCTGTACATCATCTTGTGAGTAAAGATCGAGGATGGC
GTGATTGAGCGGGTAGAAAAATTAAAAGTAATGGAGGTCCCGGTCACTAA
CCTCACCTGTTCTTTCCCTTTCTTTCTTCCTTCCTTCCCCTCGTCCTACA
ACAGCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAA
TTTGCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGCTTTTTGC
TACCTTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGT
CGGCAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAG
GTGTAGAGAGGCCGGGAAGTGGGAGAGAGGAAAGGGAGGAAGGGAGGGCA
TTGTTGTTGGAATGTAAATTTAAAGAACAGAAAAATTAAGAAAGAAGGGC
ATGAGGCATTG
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Coding sequence (CDS) from alignment at chr11:290288..293298+

>NO11G00700.1 ID=NO11G00700.1|Name=NO11G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at chr11:290288..293298+ (Nannochloropsis oceanica)
ATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCAATGGCATTTTAAA
AATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCCTTATACATGTTCA
TATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCAGTTCAAATACGTC
GCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCTTCATGTATGGGTC
CAGAGGCAAGGCTCTGTACATCATCTTCATTGCCTTTCTCAACTTCGGCC
TAGTCAGCACGGGTGTCCTCCAATTTGCGACTGGCATCGTGCTGGCTGTC
GATGGGTGCCTTATGCTTTTTGCTACCTTTAGATACCCGTCGCTCTTTGC
AGGAAATACACCAGCACAGCCGTCGGCAAGCTCGTCGCACCCAGCGGCGG
CAGCCTCGAAGGGACCAGGGCAGGTGTAG
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Synonyms
Publications