NO11G00690.1, NO11G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00690.1
Unique NameNO11G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1132
Alignment locationchr11:288867..290273 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:288867..290273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00690.1 vs.
Match: EWM25144.1 (peptidylprolyl isomerase [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 5.500e-86
Identity = 166/208 (79.81%), Postives = 185/208 (88.94%), Query Frame = 0
Query:    1 MRFEAVLLVLAACTPAASFMM-PISRRASGQVVKAAVAFRPFGSQATLKRGAPQMKELVSRQEHLRAATLGSLLGGLALFASGGGPARADDSGFQVSESGLKSKIIKEGTGAIPSAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 208
            M     L+++A+ T  +SFMM P+SR A+G +VKAAVA RP  SQ  ++RG+PQMKEL++RQ+HLR ATLGSLLGG ALFASGGG ARA+D GF+ + SGLK KI+KEGTGAIP+AGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG
Sbjct:   38 MHLPTFLVLIASLTSTSSFMMTPLSRHAAGHLVKAAVACRPGISQMAVRRGSPQMKELINRQQHLRRATLGSLLGGFALFASGGGVARAED-GFETTSSGLKYKILKEGTGAIPAAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRAGVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFTMELKSIG 244          
The following BLAST results are available for this feature:
BLAST of NO11G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25144.15.500e-8679.81peptidylprolyl isomerase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00690NO11G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00690.1NO11G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00690.1.cds1NO11G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00690.1.cds2NO11G00690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00690.1.cds3NO11G00690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00690.1 ID=NO11G00690.1|Name=NO11G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp
CTGGTAGCGGCGGCATATCTGTCTTTTTGGATGCGTTGTGTGTAGTTTGG
TGTGAATGCCACCGAAGAAGCACAACAACTCGTGCCGACTCGCGGTTTTG
CGTGTTGTGTCTTTTTCAAGGAAACCGCTGCTTTATCAGAGACCGCACGC
CAACCAGCGCCTTGTTTGTTTTCTGCGTGAGTGCTTGCATTTCACACCTG
TAGACACATGAGTTTGTTACTTTGCTTGGTCGTCGGTCTGAACTTCTATA
ACCGTAACACCCAAAAATAGATGCGTTTTGAAGCTGTATTATTGGTCCTT
GCTGCCTGCACACCCGCAGCTAGCTTCATGATGCCCATTAGCCGTCGTGC
CTCAGGCCAGGTCGTCAAGGCCGCCGTGGCCTTCCGCCCCTTCGGCTCTC
AGGCGACGCTGAAGCGTGGTGCACCCCAGATGAAAGAGCTGGTCAGCCGC
CAGGAGCACCTACGCGCAGCCACATTGGGCTCCTTGCTGGGGGGCCTTGC
GCTCTTCGCGTCGGGGGGTGGACCTGCTCGCGCGGATGACTCTGGGTTCC
AGGTATCCGAGTCGGGCCTCAAGTCCAAGATCATTAAGGAAGGCACGGGC
GCCATTCCTTCTGCTGGGCAATCCGTTAAGGTTCACTACACGGGTTGGTT
GGACGACTTCGAGTCTCCCAAGAAGTTCGACTCTTCCTACGACCGTGGAA
AGCCCTTGTCCTTCCGCGCGGGCGTCGGGCAGGTCATCGCGGGTTGGGAT
GAGGCCTTGCTGCAGATGAAGATTGGAGAGAAGAGGAATGTGATCATTCC
CCCTGGATTGGGGTACGGTGCGCGAGGGGCGGGGGGAGTGATTCCTCCGA
ATGCCACGCTCTACTTCACGATGGAGTTGAAAAGCATCGGTTAAGGTGGT
AAAAAAGCAGGAGAATGGATGGATCGAATCGTGCGTCCCATTAGCACTTG
AAGTGCCTAGAGGGGGAGAAAAAGAGTGGGAAACATTGAGGAAGCAGCGT
ATTGGAGCCTGCCAGCAGGTCTCTGAAGGGAGACAAGAGGGAAGAGAGAA
CTTTGATAGACGAAGCAAGATGGCGTATGCTTGCATGCATTAATGCTGAA
GAAAAAAGAAGAAAACAACAACATAAGCGCGA
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protein sequence of NO11G00690.1

>NO11G00690.1-protein ID=NO11G00690.1-protein|Name=NO11G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MRFEAVLLVLAACTPAASFMMPISRRASGQVVKAAVAFRPFGSQATLKRG
APQMKELVSRQEHLRAATLGSLLGGLALFASGGGPARADDSGFQVSESGL
KSKIIKEGTGAIPSAGQSVKVHYTGWLDDFESPKKFDSSYDRGKPLSFRA
GVGQVIAGWDEALLQMKIGEKRNVIIPPGLGYGARGAGGVIPPNATLYFT
MELKSIG*
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mRNA from alignment at chr11:288867..290273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00690.1 ID=NO11G00690.1|Name=NO11G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at chr11:288867..290273+ (Nannochloropsis oceanica)
CTGGTAGCGGCGGCATATCTGTCTTTTTGGATGCGTTGTGTGTAGTTTGG TGTGAATGCCACCGAAGAAGCACAACAACTCGTGCCGACTCGCGGTTTTG CGTGTTGTGTCTTTTTCAAGGAAACCGCTGCTTTATCAGAGACCGCACGC CAACCAGCGCCTTGTTTGTTTTCTGCGTGAGTGCTTGCATTTCACACCTG TAGACACATGAGTTTGTTACTTTGCTTGGTCGTCGGTCTGAACTTCTATA ACCGTAACACCCAAAAATAGATGCGTTTTGAAGCTGTATTATTGGTCCTT GCTGCCTGCACACCCGCAGCTAGCTTCATGATGCCCATTAGCCGTCGTGC CTCAGGCCAGGTCGTCAAGGCCGCCGTGGCCTTCCGCCCCTTCGGCTCTC AGGTGAACATGGCGGGGAGAGAGGGTTAGAGTGTCGGGAGGGTTGGATGG TGAAAAGCAAGATGGACTGGGACGGGAGGTTTTGGAGGCCGCATCCGCAC GCATCTTAAATGTGCATTGAATTTATAAATCGACATTCACCTCTCTCTAC GACCAGGCGACGCTGAAGCGTGGTGCACCCCAGATGAAAGAGCTGGTCAG CCGCCAGGAGCACCTACGCGCAGCCACATTGGGCTCCTTGCTGGGGGGCC TTGCGCTCTTCGCGTCGGGGGGTGGACCTGCTCGCGCGGATGACTCTGGG TTCCAGGTATCCGAGTCGGGCCTCAAGTCCAAGATCATTAAGGAAGGCAC GGGCGCCATTCCTTCTGCTGGTGGGTTTTAGGCTGTCGGAAGGAAAGTGG TGTAGAGGTGTGCTGTGGCACAAGAAAAATACCTCGCCATCTACCACATA CTCACATGCCCCTCCTCCTCCTTAACCCCCTACCCTAACAGGGCAATCCG TTAAGGTTCACTACACGGGTTGGTTGGACGACTTCGAGTCTCCCAAGAAG TTCGACTCTTCCTACGACCGTGGAAAGCCCTTGTCCTTCCGCGCGGGCGT CGGGCAGGTCATCGCGGGTTGGGATGAGGCCTTGCTGCAGATGAAGATTG GAGAGAAGAGGAATGTGATCATTCCCCCTGGATTGGGGTACGGTGCGCGA GGGGCGGGGGGAGTGATTCCTCCGAATGCCACGCTCTACTTCACGATGGA GTTGAAAAGCATCGGTTAAGGTGGTAAAAAAGCAGGAGAATGGATGGATC GAATCGTGCGTCCCATTAGCACTTGAAGTGCCTAGAGGGGGAGAAAAAGA GTGGGAAACATTGAGGAAGCAGCGTATTGGAGCCTGCCAGCAGGTCTCTG AAGGGAGACAAGAGGGAAGAGAGAACTTTGATAGACGAAGCAAGATGGCG TATGCTTGCATGCATTAATGCTGAAGAAAAAAGAAGAAAACAACAACATA AGCGCGA
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Coding sequence (CDS) from alignment at chr11:288867..290273+

>NO11G00690.1 ID=NO11G00690.1|Name=NO11G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr11:288867..290273+ (Nannochloropsis oceanica)
ATGCGTTTTGAAGCTGTATTATTGGTCCTTGCTGCCTGCACACCCGCAGC
TAGCTTCATGATGCCCATTAGCCGTCGTGCCTCAGGCCAGGTCGTCAAGG
CCGCCGTGGCCTTCCGCCCCTTCGGCTCTCAGGCGACGCTGAAGCGTGGT
GCACCCCAGATGAAAGAGCTGGTCAGCCGCCAGGAGCACCTACGCGCAGC
CACATTGGGCTCCTTGCTGGGGGGCCTTGCGCTCTTCGCGTCGGGGGGTG
GACCTGCTCGCGCGGATGACTCTGGGTTCCAGGTATCCGAGTCGGGCCTC
AAGTCCAAGATCATTAAGGAAGGCACGGGCGCCATTCCTTCTGCTGGGCA
ATCCGTTAAGGTTCACTACACGGGTTGGTTGGACGACTTCGAGTCTCCCA
AGAAGTTCGACTCTTCCTACGACCGTGGAAAGCCCTTGTCCTTCCGCGCG
GGCGTCGGGCAGGTCATCGCGGGTTGGGATGAGGCCTTGCTGCAGATGAA
GATTGGAGAGAAGAGGAATGTGATCATTCCCCCTGGATTGGGGTACGGTG
CGCGAGGGGCGGGGGGAGTGATTCCTCCGAATGCCACGCTCTACTTCACG
ATGGAGTTGAAAAGCATCGGTTAA
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Synonyms
Publications