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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:277826..280578 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00650.1 vs.
Match: ETL89450.1 (hypothetical protein L917_11630 [Phytophthora parasitica]) HSP 1 Score: 136.0 bits (341), Expect = 4.300e-28 Identity = 139/486 (28.60%), Postives = 197/486 (40.53%), Query Frame = 0
Query: 148 HLSLVLDINKTILLEDPAGGKDVQALLNEIVSEIAYGRVDQLKPQHKQQQSRKWSADLSMSLHVGPRPPGTPPSLVSYASFVHDTYP--DLPAINLKQMKAIRDGLKGTFTLPGQPGHRFASEITMLTEALRLPPGLSPGLMKAAGLEGQKRVGILPAFFHFLLRLQAEQETQQQQEEEGGRGSDTFSTSFSKSPSS-ISPAS------QQKKEASSWRFAVQFRTFGEDLPRVIQEFNLFVRGNHPLFPGQRLGTEGEEGREDEMVDYAFDMVGDPECFGCMFRDAEGPPVLLLGTLHPPSCRADLRHLLQAHKGKQQLLSQKQQQQQQQQQQQQQQHQQQQQQRQQSPRRILEGIPAIHAFMQQRQASLRPSLAIRDYWPWWRQNLEASEAGKLVPLPCLKGEREGGEEGRGTEEEEWFTVVIDDNIEHTRAHIIDLRCGETGEEVPFEEGVEGGHLVRAEPYLAIRNPENYFWDCLKASLKRR 625
H+ L D+NKT ++ DP GK + +LN++++E A GRV + Q W D +L G +LVSY +F+ +P P I K+ K +R L+ FT G PG SE L + H LL L E Q ++ S+SP I PA QK E +F + FRTFG+DL RV QEFN F G HP FP + +G +G D + G+ FG R AEG L++GT P D L+ Q+ +I++G+ IH + +R + +LA+RD++P+W +N E AGKL+ L + + G + DDNI AHI+D R + F E E HL+R EP L + E YF D + SL+RR
Sbjct: 6 HVLLYFDVNKTAIMHDPVQGKTLPHILNDLLTERALGRVIDVPGGDSQ-----WVWDGEKALGEGALDAREDDNLVSYGAFLRAKFPLSGDPKI-AKEHKHMRKVLRQDFTATGNPGEGLKSEHDELLQ-------------------------------HLLLPLTGASEAQLEE------------VGLSESPYCFIVPAFFRFLEYLQKNEV---KFNLIFRTFGDDLHRVAQEFNCFCEGRHPCFPLVK-PMDGSDGGVDRRIHLHEMPDGEMPRFGTFLR-AEGTTALVMGTFKQPKTVDDAEPLVF-------------------------------YSTQRETVQIVQGLSQIHDLLTRRWRDSQATLALRDFYPYWFRNREDPTAGKLLVL-------DPTDSAEGVH-----AMFFDDNILPHDAHIVDARYAHNDSALSFAETRE-LHLMRVEP-LDVIQSETYFIDRFQMSLERR 392
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00650.1 ID=NO11G00650.1|Name=NO11G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2753bp
TTACACATATTGCTGTGTGTGTCTTCTTTCATATCTCAAGGCAGTATGTC
GGTACAGACACATTATCTTTCCTATTCGCAGTATTATAATGCTGTAGTTC
TCCGACGACAAGCTGTATGTGTACACAGAGGTTCCTCCTAGAAAACCCTT
GTTTCGCATCTTCCTCTGCTTGGCATCCTCAACGCCCATACCGTGTCCTC
CACACCGTTTGAAAACATGCTCACACTTTGCAATGATGCTGTTCCAACCA
CTGCCTCTCGCATCGAAACCCAAATGCACCTTCAACCCATCCTAAAAGAG
ATGAGGGGGGGAAAATAATTGCGGGTATTGTGGTGGGAAAGGCGAAGAAG
AAGCCCCAGTCCATGATGGCACATGCCTTCCTTCCGTGCCCCATTCCGCA
CGGGCAATAATTAATCATCCAACATGAGTATTACCCACCCACCGACCATG
CCACACAACTTATCTTGGTCATATCCATCTACTCATACCTTTCGATGCAT
AAATTATATGGTGTCGCCACAAAAATCACGCCCTCGCCTGGCGTCTGGAA
TGCGATGAAGAAGAAGCCGCCATTGGGGGGTCCGTCTCGCAAATCCTCCT
CATCTCTTCACATTCCTTCCCGTGGCTGAAGCAGTTCCATTCGCATACAT
GTTTGGTCCAGATGAATTCTTTTCTGATGAGGTGATCAAAGTGTCTGGCG
CCTCATTCGGGTCTGTTGCAGCTCATTTTGACCGATTTCTTTCTTTTCCG
TTTGCAGGGCAATTACCGGTGGTTGGTTCCGTCAATCCACCGCGCATGCA
CCGGCCATTCGAGCTTCAATTTATGCTTTTACTACTTTTCATGCCTTTTC
TGTGCGATGCTTTTACGGTAACCCATCGGCGATGCCGTACAAGCTTCCTC
CTTCCAGCCATTGTCCGTCACCCCACGGCTGCCGCAAGGGTACGGATCAG
GCAGCTCGATCCGCAAGCCAACCACCTCTCATCCTTCTACTTTTCCTCCT
CCTCCTCTTTCTTCTTCCTCTCCTCTCTACGCTCCGCCTCCATCTGTTCG
TCCTCCACCACCACCATCGCCAACTCAGTTCCATTGCCGCACCTCTCCCT
CGTTTTGGACATAAACAAAACCATCCTTCTGGAGGATCCCGCCGGCGGCA
AAGATGTCCAAGCCCTCCTCAATGAGATCGTTTCCGAAATTGCATACGGC
CGTGTGGATCAGCTAAAGCCGCAGCACAAACAGCAACAGTCGCGAAAATG
GTCGGCCGATCTAAGCATGTCTTTGCACGTGGGTCCCAGGCCACCAGGCA
CACCTCCCTCCCTTGTTTCCTACGCATCCTTCGTTCACGATACCTACCCC
GACCTACCTGCAATCAATCTGAAGCAAATGAAAGCCATCCGAGACGGGCT
AAAAGGCACATTTACACTTCCGGGGCAACCGGGCCATCGTTTTGCATCGG
AGATCACGATGCTTACAGAGGCGCTCCGTCTACCACCGGGACTCTCCCCT
GGCTTGATGAAGGCTGCAGGCTTGGAGGGGCAGAAGCGAGTGGGTATTCT
TCCAGCTTTCTTCCATTTCCTCCTTAGACTACAAGCAGAGCAGGAGACGC
AGCAACAGCAGGAAGAGGAGGGAGGAAGAGGAAGTGATACCTTCTCCACA
TCATTTTCCAAATCACCCTCTTCAATCTCACCTGCAAGTCAACAGAAGAA
GGAGGCCTCATCTTGGCGATTTGCAGTGCAATTCCGCACTTTCGGTGAAG
ACTTGCCGAGGGTTATCCAGGAATTCAACTTGTTTGTGCGTGGAAATCAC
CCGCTGTTTCCCGGACAACGTCTAGGGACGGAGGGGGAGGAAGGGAGGGA
AGACGAGATGGTGGACTATGCATTTGACATGGTGGGCGATCCGGAGTGTT
TTGGATGTATGTTTCGTGATGCTGAAGGACCGCCTGTCCTCCTTCTCGGT
ACCTTACACCCTCCCTCCTGCCGCGCCGATCTCCGGCATCTCCTCCAAGC
ACACAAGGGAAAACAGCAGCTCCTGTCACAGAAGCAGCAGCAGCAGCAGC
AGCAACAACAACAACAACAACAACAACACCAACAACAACAACAACAACGA
CAACAATCACCACGTCGCATTCTAGAGGGGATCCCTGCCATCCATGCATT
TATGCAACAGCGGCAAGCAAGCCTAAGGCCTTCGCTCGCCATCCGCGACT
ACTGGCCTTGGTGGCGTCAGAACCTGGAGGCAAGCGAAGCAGGAAAATTG
GTGCCCTTACCTTGTTTGAAGGGAGAGAGGGAGGGAGGAGAGGAAGGGAG
GGGAACTGAAGAGGAGGAGTGGTTTACCGTGGTGATAGATGATAATATCG
AGCATACTCGGGCCCATATAATTGACTTGCGTTGTGGTGAGACGGGTGAG
GAGGTGCCGTTTGAGGAAGGGGTGGAGGGAGGGCACCTTGTGCGAGCAGA
ACCTTATCTGGCGATCCGGAATCCGGAAAATTATTTTTGGGATTGTCTGA
AAGCGTCTTTGAAGAGGAGGAAGGAGAGGAGGAGGCGGAGTAGGAAGGAC
GAGGGAAGGAACGCCGGGCAATCGCCGGCAGGAGGATAGTAAAGCATGGA
TGCGATCCTTATGTGTTGTCGATATAGTGAACTAAGTCGTAATTGAAATT
AGCAAATTGAGTGGAAAATTGAGCGGATAATGCGAAAATTATAAAATGAT
CGAATGAGCACGGGTTTCGAAGCCATCAGAGGACAAAGTGTGTCCTCGCA
CAC back to topprotein sequence of NO11G00650.1 >NO11G00650.1-protein ID=NO11G00650.1-protein|Name=NO11G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MFGPDEFFSDEVIKVSGASFGSVAAHFDRFLSFPFAGQLPVVGSVNPPRM
HRPFELQFMLLLLFMPFLCDAFTVTHRRCRTSFLLPAIVRHPTAAARVRI
RQLDPQANHLSSFYFSSSSSFFFLSSLRSASICSSSTTTIANSVPLPHLS
LVLDINKTILLEDPAGGKDVQALLNEIVSEIAYGRVDQLKPQHKQQQSRK
WSADLSMSLHVGPRPPGTPPSLVSYASFVHDTYPDLPAINLKQMKAIRDG
LKGTFTLPGQPGHRFASEITMLTEALRLPPGLSPGLMKAAGLEGQKRVGI
LPAFFHFLLRLQAEQETQQQQEEEGGRGSDTFSTSFSKSPSSISPASQQK
KEASSWRFAVQFRTFGEDLPRVIQEFNLFVRGNHPLFPGQRLGTEGEEGR
EDEMVDYAFDMVGDPECFGCMFRDAEGPPVLLLGTLHPPSCRADLRHLLQ
AHKGKQQLLSQKQQQQQQQQQQQQQQHQQQQQQRQQSPRRILEGIPAIHA
FMQQRQASLRPSLAIRDYWPWWRQNLEASEAGKLVPLPCLKGEREGGEEG
RGTEEEEWFTVVIDDNIEHTRAHIIDLRCGETGEEVPFEEGVEGGHLVRA
EPYLAIRNPENYFWDCLKASLKRRKERRRRSRKDEGRNAGQSPAGG* back to topmRNA from alignment at chr11:277826..280578- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00650.1 ID=NO11G00650.1|Name=NO11G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2753bp|location=Sequence derived from alignment at chr11:277826..280578- (Nannochloropsis oceanica)
TTACACATATTGCTGTGTGTGTCTTCTTTCATATCTCAAGGCAGTATGTC
GGTACAGACACATTATCTTTCCTATTCGCAGTATTATAATGCTGTAGTTC
TCCGACGACAAGCTGTATGTGTACACAGAGGTTCCTCCTAGAAAACCCTT
GTTTCGCATCTTCCTCTGCTTGGCATCCTCAACGCCCATACCGTGTCCTC
CACACCGTTTGAAAACATGCTCACACTTTGCAATGATGCTGTTCCAACCA
CTGCCTCTCGCATCGAAACCCAAATGCACCTTCAACCCATCCTAAAAGAG
ATGAGGGGGGGAAAATAATTGCGGGTATTGTGGTGGGAAAGGCGAAGAAG
AAGCCCCAGTCCATGATGGCACATGCCTTCCTTCCGTGCCCCATTCCGCA
CGGGCAATAATTAATCATCCAACATGAGTATTACCCACCCACCGACCATG
CCACACAACTTATCTTGGTCATATCCATCTACTCATACCTTTCGATGCAT
AAATTATATGGTGTCGCCACAAAAATCACGCCCTCGCCTGGCGTCTGGAA
TGCGATGAAGAAGAAGCCGCCATTGGGGGGTCCGTCTCGCAAATCCTCCT
CATCTCTTCACATTCCTTCCCGTGGCTGAAGCAGTTCCATTCGCATACAT
GTTTGGTCCAGATGAATTCTTTTCTGATGAGGTGATCAAAGTGTCTGGCG
CCTCATTCGGGTCTGTTGCAGCTCATTTTGACCGATTTCTTTCTTTTCCG
TTTGCAGGGCAATTACCGGTGGTTGGTTCCGTCAATCCACCGCGCATGCA
CCGGCCATTCGAGCTTCAATTTATGCTTTTACTACTTTTCATGCCTTTTC
TGTGCGATGCTTTTACGGTAACCCATCGGCGATGCCGTACAAGCTTCCTC
CTTCCAGCCATTGTCCGTCACCCCACGGCTGCCGCAAGGGTACGGATCAG
GCAGCTCGATCCGCAAGCCAACCACCTCTCATCCTTCTACTTTTCCTCCT
CCTCCTCTTTCTTCTTCCTCTCCTCTCTACGCTCCGCCTCCATCTGTTCG
TCCTCCACCACCACCATCGCCAACTCAGTTCCATTGCCGCACCTCTCCCT
CGTTTTGGACATAAACAAAACCATCCTTCTGGAGGATCCCGCCGGCGGCA
AAGATGTCCAAGCCCTCCTCAATGAGATCGTTTCCGAAATTGCATACGGC
CGTGTGGATCAGCTAAAGCCGCAGCACAAACAGCAACAGTCGCGAAAATG
GTCGGCCGATCTAAGCATGTCTTTGCACGTGGGTCCCAGGCCACCAGGCA
CACCTCCCTCCCTTGTTTCCTACGCATCCTTCGTTCACGATACCTACCCC
GACCTACCTGCAATCAATCTGAAGCAAATGAAAGCCATCCGAGACGGGCT
AAAAGGCACATTTACACTTCCGGGGCAACCGGGCCATCGTTTTGCATCGG
AGATCACGATGCTTACAGAGGCGCTCCGTCTACCACCGGGACTCTCCCCT
GGCTTGATGAAGGCTGCAGGCTTGGAGGGGCAGAAGCGAGTGGGTATTCT
TCCAGCTTTCTTCCATTTCCTCCTTAGACTACAAGCAGAGCAGGAGACGC
AGCAACAGCAGGAAGAGGAGGGAGGAAGAGGAAGTGATACCTTCTCCACA
TCATTTTCCAAATCACCCTCTTCAATCTCACCTGCAAGTCAACAGAAGAA
GGAGGCCTCATCTTGGCGATTTGCAGTGCAATTCCGCACTTTCGGTGAAG
ACTTGCCGAGGGTTATCCAGGAATTCAACTTGTTTGTGCGTGGAAATCAC
CCGCTGTTTCCCGGACAACGTCTAGGGACGGAGGGGGAGGAAGGGAGGGA
AGACGAGATGGTGGACTATGCATTTGACATGGTGGGCGATCCGGAGTGTT
TTGGATGTATGTTTCGTGATGCTGAAGGACCGCCTGTCCTCCTTCTCGGT
ACCTTACACCCTCCCTCCTGCCGCGCCGATCTCCGGCATCTCCTCCAAGC
ACACAAGGGAAAACAGCAGCTCCTGTCACAGAAGCAGCAGCAGCAGCAGC
AGCAACAACAACAACAACAACAACAACACCAACAACAACAACAACAACGA
CAACAATCACCACGTCGCATTCTAGAGGGGATCCCTGCCATCCATGCATT
TATGCAACAGCGGCAAGCAAGCCTAAGGCCTTCGCTCGCCATCCGCGACT
ACTGGCCTTGGTGGCGTCAGAACCTGGAGGCAAGCGAAGCAGGAAAATTG
GTGCCCTTACCTTGTTTGAAGGGAGAGAGGGAGGGAGGAGAGGAAGGGAG
GGGAACTGAAGAGGAGGAGTGGTTTACCGTGGTGATAGATGATAATATCG
AGCATACTCGGGCCCATATAATTGACTTGCGTTGTGGTGAGACGGGTGAG
GAGGTGCCGTTTGAGGAAGGGGTGGAGGGAGGGCACCTTGTGCGAGCAGA
ACCTTATCTGGCGATCCGGAATCCGGAAAATTATTTTTGGGATTGTCTGA
AAGCGTCTTTGAAGAGGAGGAAGGAGAGGAGGAGGCGGAGTAGGAAGGAC
GAGGGAAGGAACGCCGGGCAATCGCCGGCAGGAGGATAGTAAAGCATGGA
TGCGATCCTTATGTGTTGTCGATATAGTGAACTAAGTCGTAATTGAAATT
AGCAAATTGAGTGGAAAATTGAGCGGATAATGCGAAAATTATAAAATGAT
CGAATGAGCACGGGTTTCGAAGCCATCAGAGGACAAAGTGTGTCCTCGCA
CAC back to topCoding sequence (CDS) from alignment at chr11:277826..280578- >NO11G00650.1 ID=NO11G00650.1|Name=NO11G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1941bp|location=Sequence derived from alignment at chr11:277826..280578- (Nannochloropsis oceanica)
ATGTTTGGTCCAGATGAATTCTTTTCTGATGAGGTGATCAAAGTGTCTGG
CGCCTCATTCGGGTCTGTTGCAGCTCATTTTGACCGATTTCTTTCTTTTC
CGTTTGCAGGGCAATTACCGGTGGTTGGTTCCGTCAATCCACCGCGCATG
CACCGGCCATTCGAGCTTCAATTTATGCTTTTACTACTTTTCATGCCTTT
TCTGTGCGATGCTTTTACGGTAACCCATCGGCGATGCCGTACAAGCTTCC
TCCTTCCAGCCATTGTCCGTCACCCCACGGCTGCCGCAAGGGTACGGATC
AGGCAGCTCGATCCGCAAGCCAACCACCTCTCATCCTTCTACTTTTCCTC
CTCCTCCTCTTTCTTCTTCCTCTCCTCTCTACGCTCCGCCTCCATCTGTT
CGTCCTCCACCACCACCATCGCCAACTCAGTTCCATTGCCGCACCTCTCC
CTCGTTTTGGACATAAACAAAACCATCCTTCTGGAGGATCCCGCCGGCGG
CAAAGATGTCCAAGCCCTCCTCAATGAGATCGTTTCCGAAATTGCATACG
GCCGTGTGGATCAGCTAAAGCCGCAGCACAAACAGCAACAGTCGCGAAAA
TGGTCGGCCGATCTAAGCATGTCTTTGCACGTGGGTCCCAGGCCACCAGG
CACACCTCCCTCCCTTGTTTCCTACGCATCCTTCGTTCACGATACCTACC
CCGACCTACCTGCAATCAATCTGAAGCAAATGAAAGCCATCCGAGACGGG
CTAAAAGGCACATTTACACTTCCGGGGCAACCGGGCCATCGTTTTGCATC
GGAGATCACGATGCTTACAGAGGCGCTCCGTCTACCACCGGGACTCTCCC
CTGGCTTGATGAAGGCTGCAGGCTTGGAGGGGCAGAAGCGAGTGGGTATT
CTTCCAGCTTTCTTCCATTTCCTCCTTAGACTACAAGCAGAGCAGGAGAC
GCAGCAACAGCAGGAAGAGGAGGGAGGAAGAGGAAGTGATACCTTCTCCA
CATCATTTTCCAAATCACCCTCTTCAATCTCACCTGCAAGTCAACAGAAG
AAGGAGGCCTCATCTTGGCGATTTGCAGTGCAATTCCGCACTTTCGGTGA
AGACTTGCCGAGGGTTATCCAGGAATTCAACTTGTTTGTGCGTGGAAATC
ACCCGCTGTTTCCCGGACAACGTCTAGGGACGGAGGGGGAGGAAGGGAGG
GAAGACGAGATGGTGGACTATGCATTTGACATGGTGGGCGATCCGGAGTG
TTTTGGATGTATGTTTCGTGATGCTGAAGGACCGCCTGTCCTCCTTCTCG
GTACCTTACACCCTCCCTCCTGCCGCGCCGATCTCCGGCATCTCCTCCAA
GCACACAAGGGAAAACAGCAGCTCCTGTCACAGAAGCAGCAGCAGCAGCA
GCAGCAACAACAACAACAACAACAACAACACCAACAACAACAACAACAAC
GACAACAATCACCACGTCGCATTCTAGAGGGGATCCCTGCCATCCATGCA
TTTATGCAACAGCGGCAAGCAAGCCTAAGGCCTTCGCTCGCCATCCGCGA
CTACTGGCCTTGGTGGCGTCAGAACCTGGAGGCAAGCGAAGCAGGAAAAT
TGGTGCCCTTACCTTGTTTGAAGGGAGAGAGGGAGGGAGGAGAGGAAGGG
AGGGGAACTGAAGAGGAGGAGTGGTTTACCGTGGTGATAGATGATAATAT
CGAGCATACTCGGGCCCATATAATTGACTTGCGTTGTGGTGAGACGGGTG
AGGAGGTGCCGTTTGAGGAAGGGGTGGAGGGAGGGCACCTTGTGCGAGCA
GAACCTTATCTGGCGATCCGGAATCCGGAAAATTATTTTTGGGATTGTCT
GAAAGCGTCTTTGAAGAGGAGGAAGGAGAGGAGGAGGCGGAGTAGGAAGG
ACGAGGGAAGGAACGCCGGGCAATCGCCGGCAGGAGGATAG back to top
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