NO11G00600.1, NO11G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00600.1
Unique NameNO11G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1065
Alignment locationchr11:256013..257449 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:256013..257449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00600.1 vs.
Match: EWM25100.1 (mitochondrial substrate carrier family protein [Nannochloropsis gaditana])

HSP 1 Score: 399.8 bits (1026), Expect = 8.700e-108
Identity = 202/261 (77.39%), Postives = 228/261 (87.36%), Query Frame = 0 
Query:   94 MQAATAGQASGAAIAVAGVAKMNAAQLLKSTIKHEGFLALYRGASSRVVGSALANSVLFGANGAFKKLFDADTALPLSGAFILASACTGAAEAAIWTPMDLLKTRCQVEYGKTVNVTPWKVAKQLIKEHGIIRGLYAGGGPTLMREVVGNMIYFTVYQTTKQAIMRARGLHEGDTLTFILAGGCAGTSYWFSILPLDTVKSIVQAQETRVTGMHVARDLYIKNGVAAFYRGVGPAMLRAFPACAATWTTFEYSLLALQRLE 355
            MQAA AGQA G  +A +GVAKM+A +LL+STIKHEG LALYRGASSRV+GSAL NSVLFGANGAF + F A+TA PLSGAF+LASA TG AEAAIWTPMDLLKTRCQVEYGK V+VTP +VA+QL ++ G+ R LYAGGGPTL+RE+VGN IYFTVYQ  KQA+M+ RGL EGD  TF++AGGCAGT+YWFSI PLDTVKSIVQAQE  +TGM VARDLY K GVAAFY+GVGPAMLRAFPACAATWTTFEYSL+AL+RLE
Sbjct:    1 MQAAAAGQAGGTVLA-SGVAKMSALELLRSTIKHEGVLALYRGASSRVLGSALGNSVLFGANGAFLQAFQANTAQPLSGAFVLASAFTGVAEAAIWTPMDLLKTRCQVEYGKKVDVTPLRVARQLFQDRGV-RALYAGGGPTLLREIVGNAIYFTVYQVIKQALMQFRGLREGDAATFVVAGGCAGTAYWFSIFPLDTVKSIVQAQEAHITGMQVARDLYAKGGVAAFYKGVGPAMLRAFPACAATWTTFEYSLMALKRLE 259
The following BLAST results are available for this feature:
BLAST of NO11G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25100.18.700e-10877.39mitochondrial substrate carrier family protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00600NO11G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00600.1NO11G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00600.1.cds1NO11G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00600.1.cds2NO11G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00600.1.cds3NO11G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00600.1 ID=NO11G00600.1|Name=NO11G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
ATGACGTCGTTGTCCTCGACCATGGCAGCGGGAGGGCCATCTTCGTACCC
CCGCATCCTGGCCATCAGCATAGGCGGCCGCTCCTCAAACATCAGTAGCA
ACGGCAGCAGCACTGATGGCAGCACAAGCCTTTCAATATCTTCGAAAAGA
AAGTTGACGGGGAAGGGGCATGACACAGCGGGAGCGTTGTGGTTCATGGC
GAAAAATTTCATTGCGGGGACCGCAGCGGGTGTTGCCGAATGCTTCGTGG
GTCACCCTTTAGATACCATCAAGGTTCGCATGCAAGCAGCCACCGCTGGT
CAGGCCTCAGGAGCAGCAATCGCTGTTGCTGGTGTCGCCAAGATGAACGC
TGCGCAACTGCTAAAAAGTACCATCAAGCATGAAGGGTTCCTCGCGCTAT
ATCGTGGAGCCTCGTCTCGGGTTGTAGGCTCAGCGTTGGCCAATTCGGTA
TTATTTGGGGCAAATGGGGCCTTCAAAAAGCTGTTTGACGCTGACACAGC
CTTGCCGCTGAGTGGAGCGTTTATCCTAGCTTCGGCCTGTACGGGGGCGG
CAGAGGCAGCGATTTGGACACCCATGGATCTTCTGAAAACTCGCTGCCAA
GTAGAATACGGCAAAACTGTCAATGTTACTCCCTGGAAAGTTGCTAAGCA
ACTCATCAAGGAGCACGGTATTATACGCGGGCTCTACGCAGGTGGAGGCC
CCACCCTCATGAGGGAAGTTGTGGGCAACATGATCTATTTTACGGTCTAC
CAAACAACTAAGCAAGCCATTATGCGTGCTCGTGGTCTTCACGAGGGTGA
CACTTTGACTTTTATACTCGCAGGGGGATGCGCAGGGACGTCGTATTGGT
TCTCCATTTTGCCGCTGGACACGGTCAAGAGCATTGTACAGGCACAAGAG
ACACGAGTGACGGGTATGCACGTCGCAAGGGACTTATACATCAAGAATGG
GGTGGCTGCATTCTACCGAGGAGTGGGGCCGGCCATGCTACGGGCGTTCC
CAGCATGTGCGGCGACGTGGACGACATTTGAGTATTCCTTGCTCGCCTTG
CAGCGATTAGAATGA
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protein sequence of NO11G00600.1

>NO11G00600.1-protein ID=NO11G00600.1-protein|Name=NO11G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MTSLSSTMAAGGPSSYPRILAISIGGRSSNISSNGSSTDGSTSLSISSKR
KLTGKGHDTAGALWFMAKNFIAGTAAGVAECFVGHPLDTIKVRMQAATAG
QASGAAIAVAGVAKMNAAQLLKSTIKHEGFLALYRGASSRVVGSALANSV
LFGANGAFKKLFDADTALPLSGAFILASACTGAAEAAIWTPMDLLKTRCQ
VEYGKTVNVTPWKVAKQLIKEHGIIRGLYAGGGPTLMREVVGNMIYFTVY
QTTKQAIMRARGLHEGDTLTFILAGGCAGTSYWFSILPLDTVKSIVQAQE
TRVTGMHVARDLYIKNGVAAFYRGVGPAMLRAFPACAATWTTFEYSLLAL
QRLE*
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mRNA from alignment at chr11:256013..257449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00600.1 ID=NO11G00600.1|Name=NO11G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr11:256013..257449- (Nannochloropsis oceanica)
ATGACGTCGTTGTCCTCGACCATGGCAGCGGGAGGGCCATCTTCGTACCC
CCGCATCCTGGCCATCAGCATAGGCGGCCGCTCCTCAAACATCAGTAGCA
ACGGCAGCAGCACTGATGGCAGCACAAGCCTTTCAATATCTTCGAAAAGA
AAGTTGACGGGGAAGGGGCATGACACAGCGGGAGCGTTGTGGTTCATGGC
GAAAAATTTCATTGCGGGGACCGCAGCGGGTACGTCGCTGTGGTGGAGCA
AAGTGGAAGATGGAGAATGAGGATCGGGTTGGAGAAGTGTTTCTATTTGT
TATTAGTTTATGTATAAAAGTTGTACTCTTTGTTTCTTGTGTGAAATGAG
ACCGGGAGAATCAGAACTTTCTTGCGAAGATGTACATACAGTCACACACA
CCTTTTTCTCGCTGTCTCTCCTTCTTCATTCCCTTCCTTCCTCCAAGGTG
TTGCCGAATGCTTCGTGGGTCACCCTTTAGATACCATCAAGGTTCGCATG
CAAGCAGCCACCGCTGGTCAGGCCTCAGGAGCAGCAATCGCTGTTGCTGG
TGTCGCCAAGATGAACGCTGCGCAACTGCTAAAAAGTACCATCAAGCATG
AAGGGTTCCTCGCGCTATATCGTGGAGCCTCGTCTCGGGTTGTAGGCTCA
GCGTTGGCCAATTCGGTATTATTTGGGGCAAATGGGGCCTTCAAAAAGCT
GTTTGACGCTGACACAGCCTTGCCGCTGAGTGGAGCGTTTATCCTAGCTT
CGGCCTGTACGGGGGCGGCAGAGGCAGCGATTTGGACACCCATGGGTAAG
GAGAAGGGAGCATAATGAAGTATGGAGAACATGATTAAGAAGGAGAGGCC
AGACAATTCTTCAAAAGCTCATATTATTTTCTTCTCACTACAACCATTAC
TCACCACTTTTCCTTCCCTCTCTCTACCCCATCCACCCACCAAAATTAGA
TCTTCTGAAAACTCGCTGCCAAGTAGAATACGGCAAAACTGTCAATGTTA
CTCCCTGGAAAGTTGCTAAGCAACTCATCAAGGAGCACGGTATTATACGC
GGGCTCTACGCAGGTGGAGGCCCCACCCTCATGAGGGAAGTTGTGGGCAA
CATGATCTATTTTACGGTCTACCAAACAACTAAGCAAGCCATTATGCGTG
CTCGTGGTCTTCACGAGGGTGACACTTTGACTTTTATACTCGCAGGGGGA
TGCGCAGGGACGTCGTATTGGTTCTCCATTTTGCCGCTGGACACGGTCAA
GAGCATTGTACAGGCACAAGAGACACGAGTGACGGGTATGCACGTCGCAA
GGGACTTATACATCAAGAATGGGGTGGCTGCATTCTACCGAGGAGTGGGG
CCGGCCATGCTACGGGCGTTCCCAGCATGTGCGGCGACGTGGACGACATT
TGAGTATTCCTTGCTCGCCTTGCAGCGATTAGAATGA
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Coding sequence (CDS) from alignment at chr11:256013..257449-

>NO11G00600.1 ID=NO11G00600.1|Name=NO11G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr11:256013..257449- (Nannochloropsis oceanica)
ATGACGTCGTTGTCCTCGACCATGGCAGCGGGAGGGCCATCTTCGTACCC
CCGCATCCTGGCCATCAGCATAGGCGGCCGCTCCTCAAACATCAGTAGCA
ACGGCAGCAGCACTGATGGCAGCACAAGCCTTTCAATATCTTCGAAAAGA
AAGTTGACGGGGAAGGGGCATGACACAGCGGGAGCGTTGTGGTTCATGGC
GAAAAATTTCATTGCGGGGACCGCAGCGGGTGTTGCCGAATGCTTCGTGG
GTCACCCTTTAGATACCATCAAGGTTCGCATGCAAGCAGCCACCGCTGGT
CAGGCCTCAGGAGCAGCAATCGCTGTTGCTGGTGTCGCCAAGATGAACGC
TGCGCAACTGCTAAAAAGTACCATCAAGCATGAAGGGTTCCTCGCGCTAT
ATCGTGGAGCCTCGTCTCGGGTTGTAGGCTCAGCGTTGGCCAATTCGGTA
TTATTTGGGGCAAATGGGGCCTTCAAAAAGCTGTTTGACGCTGACACAGC
CTTGCCGCTGAGTGGAGCGTTTATCCTAGCTTCGGCCTGTACGGGGGCGG
CAGAGGCAGCGATTTGGACACCCATGGATCTTCTGAAAACTCGCTGCCAA
GTAGAATACGGCAAAACTGTCAATGTTACTCCCTGGAAAGTTGCTAAGCA
ACTCATCAAGGAGCACGGTATTATACGCGGGCTCTACGCAGGTGGAGGCC
CCACCCTCATGAGGGAAGTTGTGGGCAACATGATCTATTTTACGGTCTAC
CAAACAACTAAGCAAGCCATTATGCGTGCTCGTGGTCTTCACGAGGGTGA
CACTTTGACTTTTATACTCGCAGGGGGATGCGCAGGGACGTCGTATTGGT
TCTCCATTTTGCCGCTGGACACGGTCAAGAGCATTGTACAGGCACAAGAG
ACACGAGTGACGGGTATGCACGTCGCAAGGGACTTATACATCAAGAATGG
GGTGGCTGCATTCTACCGAGGAGTGGGGCCGGCCATGCTACGGGCGTTCC
CAGCATGTGCGGCGACGTGGACGACATTTGAGTATTCCTTGCTCGCCTTG
CAGCGATTAGAATGA
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Synonyms
Publications