NO11G00590.1, NO11G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00590.1
Unique NameNO11G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr11:253608..255020 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:253608..255020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00590.1 vs.
Match: EWM25141.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 410.6 bits (1054), Expect = 6.500e-111
Identity = 250/460 (54.35%), Postives = 298/460 (64.78%), Query Frame = 0 
Query:   23 QPTHLATLPFPLGWQLICDNLMTPDIMRLAQTSRDHLGVGFSMVQHLVLRLDDADQDHGGN-EGTHA--ASQSVTMQLSHLLARCPHLETLSCWSLASKKSIYLGRAL------CLQPCFP--RLRVLALTNAGLGAEGLRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRG-GSGDGTTDKGGDVHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSAGAAAPPPPPLADPGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHSHACVFLEILSLDGNVLGPTGTAHLAHAFRGGACYYLRQLHLRNNDVRGEGLRELLSAFAIGACPRLAVLSLESNMFGTQGAKLLARALTSGACAELLVLNLNFTFIGEHGTRALAEAFGRGACRRIQKLYFKSACLQRAGTIDHLLAATAATVGDVGGIGGRRGERREDGREAVLVL 471
            QP  LA LP+P+GW+L+CD L T DI+ LAQT+ +HL +GFSM+QHL LR+ + D++ G   EG  +   S++V   L+  L+RC  L++LSC SL   K   LG A+      CL    P  R+RVLAL++AGL  EGL  LLPS    PALEELLLDGNALGNQGV+A +R LRG G  D     GG V     +  + Q LKVLSLA+NGIG  GA ELALLL+G G+    A        + G     S++L                   Q+Q  +  H C  LE L LDGNVLGP+GTAHLA AFR GAC  LRQLHLRNNDVRG+GL++LLSAFA GACP L VLSLESNMFGT GA+ LA AL+SGACA+L VLNLNFTFIGEHG RALAEAFG+GACRRI  LY KSACL+RA T+DHL A+T A        G R G    +    VLVL
Sbjct:   32 QPIPLARLPYPVGWRLVCDFLGTHDIIHLAQTTSEHLNMGFSMIQHLTLRIREEDENLGRKGEGCQSMCTSRAVGSHLARFLSRCVELDSLSCRSLTFSKGECLGDAMRQLRIRCLHSPSPLSRVRVLALSHAGLRVEGLLHLLPSLHLFPALEELLLDGNALGNQGVRAFSRSLRGLGWKDSD---GGRVSERFSSMGTGQCLKVLSLASNGIGTAGANELALLLSGAGNGDVRA-------WNGGDAHPASAVLE----------------TSQHQSLSQRHPCALLEALCLDGNVLGPSGTAHLARAFRRGACTQLRQLHLRNNDVRGQGLQDLLSAFASGACPHLTVLSLESNMFGTVGARWLAHALSSGACADLRVLNLNFTFIGEHGMRALAEAFGQGACRRIHTLYLKSACLRRASTLDHLQASTRA--------GEREGRGERERGYPVLVL 457
The following BLAST results are available for this feature:
BLAST of NO11G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25141.16.500e-11154.35Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00590NO11G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00590.1NO11G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00590.1.cds1NO11G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00590.1 ID=NO11G00590.1|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC
TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT
TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT
TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA
GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG
AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG
TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC
TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC
CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT
CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT
ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC
GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT
GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT
ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC
TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT
CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG
CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA
TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA
ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT
TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC
TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC
TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA
TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG
GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC
GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG
ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA
CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC
GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT
GCTAGTGTTGTAA
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protein sequence of NO11G00590.1

>NO11G00590.1-protein ID=NO11G00590.1-protein|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MWIPSTEARANTAANEPLSRLRQPTHLATLPFPLGWQLICDNLMTPDIMR
LAQTSRDHLGVGFSMVQHLVLRLDDADQDHGGNEGTHAASQSVTMQLSHL
LARCPHLETLSCWSLASKKSIYLGRALCLQPCFPRLRVLALTNAGLGAEG
LRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRGGSGDGTTDKGGD
VHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSAGAAAPPP
PPLADPGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHSHACVFLE
ILSLDGNVLGPTGTAHLAHAFRGGACYYLRQLHLRNNDVRGEGLRELLSA
FAIGACPRLAVLSLESNMFGTQGAKLLARALTSGACAELLVLNLNFTFIG
EHGTRALAEAFGRGACRRIQKLYFKSACLQRAGTIDHLLAATAATVGDVG
GIGGRRGERREDGREAVLVL*
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mRNA from alignment at chr11:253608..255020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00590.1 ID=NO11G00590.1|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr11:253608..255020- (Nannochloropsis oceanica)
ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC
TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT
TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT
TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA
GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG
AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG
TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC
TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC
CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT
CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT
ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC
GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT
GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT
ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC
TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT
CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG
CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA
TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA
ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT
TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC
TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC
TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA
TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG
GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC
GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG
ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA
CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC
GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT
GCTAGTGTTGTAA
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Coding sequence (CDS) from alignment at chr11:253608..255020-

>NO11G00590.1 ID=NO11G00590.1|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr11:253608..255020- (Nannochloropsis oceanica)
ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC
TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT
TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT
TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA
GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG
AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG
TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC
TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC
CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT
CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT
ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC
GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT
GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT
ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC
TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT
CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG
CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA
TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA
ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT
TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC
TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC
TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA
TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG
GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC
GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG
ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA
CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC
GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT
GCTAGTGTTGTAA
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Synonyms
Publications