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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:222831..226104 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00510.2 vs.
Match: EWM25168.1 (cyanate hydratase [Nannochloropsis gaditana]) HSP 1 Score: 180.3 bits (456), Expect = 5.200e-42 Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0
Query: 1 MLSSFRLAVSRH-VSSSSLRP-SLLPTTSNATRRLATAFAEEDKAFHVSNLLAAKKKAGLTFDEIAVETGLTNAYVAQLFYRQAHLKPETAKKMKAAVPTLTTDDLEVMQEVPFRSYDRAVLRTEPLIYRLEEAVLHYGMGKNIVI 145
MLS R A SR + S RP S P + TR AT F EE+KA HV NLL AKK+A LTFDEIA +TGLTNAYVAQLFYRQA LKPET KM+AAVPTLT DLE+MQEVPFRSYDR VLRTEPL+YRLEEAVLHYG+G ++
Sbjct: 1 MLSGTRRAFSRRSILSPWTRPTSFAPASITPTRAFATGFIEEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIV 146
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00510.2 ID=NO11G00510.2|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=mRNA|length=2654bp GGGATTACGGCGATGGGACGAACAAGTGGCTCTTCCCCTTCCTTTCTTAC CACTTGCATGGACAGTTTGCGATGACACTAGCAATGGCATTAGCAGCATC ATTACCTTGCAGTCGCCTTTCTCATGCCCCCCGCTTGCGTTGACTTGTCT TGGTGGATGGATTGCTCGGCCGTGGACGGAGCTCGTCAACGTCCTGCCTA CTTTTCGATGCTCGTCTGTTCTGTGTATCTCTCTCCTTCGACATACAATT ACGCCAAAATCAAACGCAAAATCTCATCAACGGATAACTCTTTGTGTTCT TTGCGCTTTTCTACAATGTCTGCGGCATGCCAGCCTTTCAAAGGAATTTC CCCCCCCCCCCAGCAATGCTTAAGATACTCTCGTTCTACAAGGCATTTAA CCTCTCTGCCCGCCCATCCTCCCGTAACAACACAGAAACATAACCTCTTA TCAATCGTATTCAATAAAGTGTCTCAAGTAACATAAATGTTGTCATCCTT CCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTCTCTCCGTCCGTCCC TCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCGCCACAGCCTTTGCA GAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTAGCAGCCAAGAAAAA GGCAGGCTTAACATTCGACGAAATTGCGGTCGAGACGGGTTTGACAAATG CCTATGTCGCCCAGCTCTTCTACCGTCAGGCACACCTTAAGCCCGAGACC GCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGACGACTTGGA AGTGATGCAGGAGGTGCCTTTCAGGTCGTATGATCGTGCCGTGTTGCGGA CTGAGCCTTTGATATACAGGCTGGAGGAAGCTGTGCTGCACTATGGCATG GGTAAGAACATTGTTATTTATTTAATTTCATATTTCATATTTATATATTA TTTTATCTTAATCTACCTGTTTATAAATAAATTCATGTACCCTTAACAAT CGACATGTAAAAAAAGGGAAGGAGATTCGTGCAAGGAAACGAAAAAGCCA AATCAGAGATGGATGCGAGGGAGGGGAAGAGGAAGGGAGGGGAAGAGGGG AAGAGGGAGCGAGGGATAGAAAGAGGTCGGGAGGAAAGCATACTCCAAAA GTGTTTTACACAATGACCGGTCTTCCGGGTCGTTGACACTGTGCATTTCC TCCCTATCTTCCTCTCCTCTCCTGCTTTCCTTTCCTCTCTCTTCACCCTT TCTTTTCTCCTTCCCTCCCTCCCTCCTTGATGACACACTTTTGCGTGCAC CAAGAAGAGTACTTAAGTAATTGGTGGGCATGCCCCTTTGAGCGCGGATC AGGCCTATATCTATTTCTCCATCCTCATTACGTATCCATATCTCCCGTAT CTTCCCTTCTTATTCCTCCCTCCCTCCTCTTGTTCTGCCTCCTCCCTCCT TTTTTACCGTCCTTTTCTGTTCTGATGTAAGATATATGTAAATATCATGA CTGTCATATATCTCCTTTCCACGCGCCCTTTTTCGGTCAAAAAGGCACAG CTCACACGCATGCGCATGCGTCGGGAGCGGGAGGTGGTGGGACTACCATG CGATTCCATGCTCCGCCTTCCCTGTGTGCCGTACGATACACCCTGTGTGC CGTACGATACATATGTATATATATATATACATAAGCAACTATATAACATG AACAAACCAATAAATCGATAAATATATATACACATACAAGCAACCATATA ACATGAATAAATCGACAAATGAATAAATAAACAGATAAACTTATATGTAG ACACCGGAGTAAACAATGCAGGCCATGATTAGACTCGAATGACTTTTCAA TTACCCAAGGCGGGGGCAAAAAGCCTATCACCGACGTGCGGGACCAATTA ATAACTACACTTGAACTGAGCCGCTTCCGACTACATGCATGCACGAGGGA GGGAAGGAGGAAGGGAGAAATGACATTATTGCGTACATGCACGAGGGAGG GAAGGAGGAAAAGAGAAGATAAGTGGAACAGGACCTTCCTCTGACAGAAC GCTCACTTTCACCGTCTTCCTTCATCTCATTCTCTCGATTTATACAAACA GGGATCAAGGCCATCGTGAACGAAAAATTCGGGGATGGGATCATGTCCGC GATTGACATGTACGCCACCGTCGAGAAAGTCAAGGGCTCGCAAGGCGAGG ACCGAGTTTTGGTGACCCTGAATGGGAAATTTTTGCCCCATGTGGAGCAA AGGGTTGAGAACAATGTGCAGGCACCGGTGGTCGAGGAGGGGGGGTTTAA AAAAACAACGCGATAGTAGCAGCCGTAGGAGTAGCAGCAACCTTCCGGGA ATGAAGGGAGGAAGGAAGGAGGAGGAGGGAGGGAGGGAAGGAGGGAGGGA AGGAGGAGTACCTCTGGACGGTAGTCAGGATGTGAAGTAGAGGCAAGGAC GCGGTAAGGAAATCAAGAGTAGAGATAGGAAAAGCAGGAAAAAGATAGAT TAGAGCATATGTGAAAAAAATTGAAGAGCGACAGAGAGAGAGAGAGAGGG AGACTTTGTGGAATATTGGAAGATGGGAGAAAAGAGACAGGAAGGATAAA GAAAAAGTTTGATTAGGGCGATAGAAAGGAGAAAGAAAAACAACTAGTGG TGTA back to topprotein sequence of NO11G00510.2 >NO11G00510.2-protein ID=NO11G00510.2-protein|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp MLSSFRLAVSRHVSSSSLRPSLLPTTSNATRRLATAFAEEDKAFHVSNLL AAKKKAGLTFDEIAVETGLTNAYVAQLFYRQAHLKPETAKKMKAAVPTLT TDDLEVMQEVPFRSYDRAVLRTEPLIYRLEEAVLHYGMGKNIVIYLISYF IFIYYFILIYLFINKFMYP* back to topmRNA from alignment at chr11:222831..226104- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00510.2 ID=NO11G00510.2|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=mRNA|length=3274bp|location=Sequence derived from alignment at chr11:222831..226104- (Nannochloropsis oceanica) GGGATTACGGCGATGGGACGAACAAGTGGCTCTTCCCCTTCCTTTCTTAC
CACTTGCATGGACAGTTTGCGATGACACTAGCAATGGCATTAGCAGCATC
ATTACCTTGCAGTCGCCTTTCTCATGCCCCCCGCTTGCGTTGACTTGTCT
TGGTGGATGGATTGCTCGGCCGTGGACGGAGCTCGTCAACGTCCTGCCTA
CTTTTCGATGCTCGTCTGTTCTGTGTATCTCTCTCCTTCGACATACAATT
ACGCCAAAATCAAACGCAAAATCTCATCAACGGATAACTCTTTGTGTTCT
TTGCGCTTTTCTACAATGTCTGCGGCATGCCAGCCTTTCAAAGGAATTTC
CCCCCCCCCCCAGCAATGCTTAAGATACTCTCGTTCTACAAGGCATTTAA
CCTCTCTGCCCGCCCATCCTCCCGTAACAACACAGAAACATAACCTCTTA
TCAATCGTATTCAATAAAGTGTCTCAAGTAACATAAATGTTGTCATCCTT
CCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTCTCTCCGTCCGTCCC
TCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCGCCACAGCCTTTGCA
GAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTAGCAGCCAAGAAAAA
GGCAGGCTTAACATTCGACGAAATTGCGGTCGAGACGGGTTTGACAAATG
CCTATGTCGCCCAGGTAGGTAGGAAAGGAGGTAAATGAGGGAGGGTGGTG
AAGGGGGAGGAGAGCGGCGTTGAAACGCTTGCTCATTTTGTCGTTAACGG
CCAAATGTGACCACGCTTAGACACAATCTCCAAATTTTATGAGCGGTCTC
AGAACATTGGCGAGCAACAGCACTCACCCTTTCCTACCTCACTCCCTCTC
TTCTCTCTTCCTCCCGTCCTCCCTTCCTCCCTTCCTCCCTTTCTTTCTCT
CTCCCTCCGTCATCCCCGAAGCTCTTCTACCGTCAGGCACACCTTAAGCC
CGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGACG
ACTTGGAAGTGATGCAGGAGGTAACGAACCACTGCGAAGGGAGGGGAGGA
CGGAGGGTGAGAAGGAAATATAGAAAGAGAGGAATAAGAGAAGGCTTACT
CCTTTGATCGATATTATAAATATACGTACATGGAATTCTTTAGGTGCCTT
TCAGGTCGTATGATCGTGCCGTGTTGCGGACTGAGCCTTTGATATACAGG
CTGGAGGAAGCTGTGCTGCACTATGGCATGGGTAAGAACATTGTTATTTA
TTTAATTTCATATTTCATATTTATATATTATTTTATCTTAATCTACCTGT
TTATAAATAAATTCATGTACCCTTAACAATCGACATGTAAAAAAAGGGAA
GGAGATTCGTGCAAGGAAACGAAAAAGCCAAATCAGAGATGGATGCGAGG
GAGGGGAAGAGGAAGGGAGGGGAAGAGGGGAAGAGGGAGCGAGGGATAGA
AAGAGGTCGGGAGGAAAGCATACTCCAAAAGTGTTTTACACAATGACCGG
TCTTCCGGGTCGTTGACACTGTGCATTTCCTCCCTATCTTCCTCTCCTCT
CCTGCTTTCCTTTCCTCTCTCTTCACCCTTTCTTTTCTCCTTCCCTCCCT
CCCTCCTTGATGACACACTTTTGCGTGCACCAAGAAGAGTACTTAAGTAA
TTGGTGGGCATGCCCCTTTGAGCGCGGATCAGGCCTATATCTATTTCTCC
ATCCTCATTACGTATCCATATCTCCCGTATCTTCCCTTCTTATTCCTCCC
TCCCTCCTCTTGTTCTGCCTCCTCCCTCCTTTTTTACCGTCCTTTTCTGT
TCTGATGTAAGATATATGTAAATATCATGACTGTCATATATCTCCTTTCC
ACGCGCCCTTTTTCGGTCAAAAAGGCACAGCTCACACGCATGCGCATGCG
TCGGGAGCGGGAGGTGGTGGGACTACCATGCGATTCCATGCTCCGCCTTC
CCTGTGTGCCGTACGATACACCCTGTGTGCCGTACGATACATATGTATAT
ATATATATACATAAGCAACTATATAACATGAACAAACCAATAAATCGATA
AATATATATACACATACAAGCAACCATATAACATGAATAAATCGACAAAT
GAATAAATAAACAGATAAACTTATATGTAGACACCGGAGTAAACAATGCA
GGCCATGATTAGACTCGAATGACTTTTCAATTACCCAAGGCGGGGGCAAA
AAGCCTATCACCGACGTGCGGGACCAATTAATAACTACACTTGAACTGAG
CCGCTTCCGACTACATGCATGCACGAGGGAGGGAAGGAGGAAGGGAGAAA
TGACATTATTGCGTACATGCACGAGGGAGGGAAGGAGGAAAAGAGAAGAT
AAGTGGAACAGGACCTTCCTCTGACAGAACGCTCACTTTCACCGTCTTCC
TTCATCTCATTCTCTCGATTTATACAAACAGGGATCAAGGCCATCGTGAA
CGAAAAATTCGGGGATGGTACGTCCTTTCGGGCATGGGGATGCTTTCCCT
CCCTCCCTCCCTCCCTCCTCCCATCCCCCCCTCCCTCTCTCCCTCCCTCC
CTCCCTCCCTCCAATCCTTCCTTCTCTTACTCGCCCTTGACCTCCCACCC
CCCCCACACTCTCTCTTTTACTTTCTATTACAAAAAATGAAACATGATTG
TGTTTCATCCCCTTTCCTTCCCCTCCCTCCCCTCCCTCCTCTTCGCCCTG
CCCTCAGGGATCATGTCCGCGATTGACATGTACGCCACCGTCGAGAAAGT
CAAGGGCTCGCAAGGCGAGGACCGAGTTTTGGTGACCCTGAATGGGAAAT
TTTTGCCCCATGTGGAGCAAAGGGTTGAGAACAATGTGCAGGCACCGGTG
GTCGAGGAGGGGGGGTTTAAAAAAACAACGCGATAGTAGCAGCCGTAGGA
GTAGCAGCAACCTTCCGGGAATGAAGGGAGGAAGGAAGGAGGAGGAGGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGAGTACCTCTGGACGGTAGTCAGGA
TGTGAAGTAGAGGCAAGGACGCGGTAAGGAAATCAAGAGTAGAGATAGGA
AAAGCAGGAAAAAGATAGATTAGAGCATATGTGAAAAAAATTGAAGAGCG
ACAGAGAGAGAGAGAGAGGGAGACTTTGTGGAATATTGGAAGATGGGAGA
AAAGAGACAGGAAGGATAAAGAAAAAGTTTGATTAGGGCGATAGAAAGGA
GAAAGAAAAACAACTAGTGGTGTA back to topCoding sequence (CDS) from alignment at chr11:222831..226104- >NO11G00510.2 ID=NO11G00510.2|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr11:222831..226104- (Nannochloropsis oceanica) ATGTTGTCATCCTTCCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTC TCTCCGTCCGTCCCTCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCG CCACAGCCTTTGCAGAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTA GCAGCCAAGAAAAAGGCAGGCTTAACATTCGACGAAATTGCGGTCGAGAC GGGTTTGACAAATGCCTATGTCGCCCAGCTCTTCTACCGTCAGGCACACC TTAAGCCCGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACA ACGGACGACTTGGAAGTGATGCAGGAGGTGCCTTTCAGGTCGTATGATCG TGCCGTGTTGCGGACTGAGCCTTTGATATACAGGCTGGAGGAAGCTGTGC TGCACTATGGCATGGGTAAGAACATTGTTATTTATTTAATTTCATATTTC ATATTTATATATTATTTTATCTTAATCTACCTGTTTATAAATAAATTCAT GTACCCTTAA back to top
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