NO11G00510.2, NO11G00510.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00510.2
Unique NameNO11G00510.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2654
Alignment locationchr11:222831..226104 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:222831..226104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00510.2 vs.
Match: EWM25168.1 (cyanate hydratase [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 5.200e-42
Identity = 100/146 (68.49%), Postives = 111/146 (76.03%), Query Frame = 0
Query:    1 MLSSFRLAVSRH-VSSSSLRP-SLLPTTSNATRRLATAFAEEDKAFHVSNLLAAKKKAGLTFDEIAVETGLTNAYVAQLFYRQAHLKPETAKKMKAAVPTLTTDDLEVMQEVPFRSYDRAVLRTEPLIYRLEEAVLHYGMGKNIVI 145
            MLS  R A SR  + S   RP S  P +   TR  AT F EE+KA HV NLL AKK+A LTFDEIA +TGLTNAYVAQLFYRQA LKPET  KM+AAVPTLT  DLE+MQEVPFRSYDR VLRTEPL+YRLEEAVLHYG+G   ++
Sbjct:    1 MLSGTRRAFSRRSILSPWTRPTSFAPASITPTRAFATGFIEEEKAVHVHNLLKAKKEARLTFDEIAAKTGLTNAYVAQLFYRQAQLKPETVPKMEAAVPTLTGKDLEIMQEVPFRSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIV 146          
The following BLAST results are available for this feature:
BLAST of NO11G00510.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25168.15.200e-4268.49cyanate hydratase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00510NO11G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00510.2NO11G00510.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00510.2.cds1NO11G00510.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00510.2.cds2NO11G00510.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00510.2.cds3NO11G00510.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00510.2 ID=NO11G00510.2|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=mRNA|length=2654bp
GGGATTACGGCGATGGGACGAACAAGTGGCTCTTCCCCTTCCTTTCTTAC
CACTTGCATGGACAGTTTGCGATGACACTAGCAATGGCATTAGCAGCATC
ATTACCTTGCAGTCGCCTTTCTCATGCCCCCCGCTTGCGTTGACTTGTCT
TGGTGGATGGATTGCTCGGCCGTGGACGGAGCTCGTCAACGTCCTGCCTA
CTTTTCGATGCTCGTCTGTTCTGTGTATCTCTCTCCTTCGACATACAATT
ACGCCAAAATCAAACGCAAAATCTCATCAACGGATAACTCTTTGTGTTCT
TTGCGCTTTTCTACAATGTCTGCGGCATGCCAGCCTTTCAAAGGAATTTC
CCCCCCCCCCCAGCAATGCTTAAGATACTCTCGTTCTACAAGGCATTTAA
CCTCTCTGCCCGCCCATCCTCCCGTAACAACACAGAAACATAACCTCTTA
TCAATCGTATTCAATAAAGTGTCTCAAGTAACATAAATGTTGTCATCCTT
CCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTCTCTCCGTCCGTCCC
TCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCGCCACAGCCTTTGCA
GAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTAGCAGCCAAGAAAAA
GGCAGGCTTAACATTCGACGAAATTGCGGTCGAGACGGGTTTGACAAATG
CCTATGTCGCCCAGCTCTTCTACCGTCAGGCACACCTTAAGCCCGAGACC
GCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGACGACTTGGA
AGTGATGCAGGAGGTGCCTTTCAGGTCGTATGATCGTGCCGTGTTGCGGA
CTGAGCCTTTGATATACAGGCTGGAGGAAGCTGTGCTGCACTATGGCATG
GGTAAGAACATTGTTATTTATTTAATTTCATATTTCATATTTATATATTA
TTTTATCTTAATCTACCTGTTTATAAATAAATTCATGTACCCTTAACAAT
CGACATGTAAAAAAAGGGAAGGAGATTCGTGCAAGGAAACGAAAAAGCCA
AATCAGAGATGGATGCGAGGGAGGGGAAGAGGAAGGGAGGGGAAGAGGGG
AAGAGGGAGCGAGGGATAGAAAGAGGTCGGGAGGAAAGCATACTCCAAAA
GTGTTTTACACAATGACCGGTCTTCCGGGTCGTTGACACTGTGCATTTCC
TCCCTATCTTCCTCTCCTCTCCTGCTTTCCTTTCCTCTCTCTTCACCCTT
TCTTTTCTCCTTCCCTCCCTCCCTCCTTGATGACACACTTTTGCGTGCAC
CAAGAAGAGTACTTAAGTAATTGGTGGGCATGCCCCTTTGAGCGCGGATC
AGGCCTATATCTATTTCTCCATCCTCATTACGTATCCATATCTCCCGTAT
CTTCCCTTCTTATTCCTCCCTCCCTCCTCTTGTTCTGCCTCCTCCCTCCT
TTTTTACCGTCCTTTTCTGTTCTGATGTAAGATATATGTAAATATCATGA
CTGTCATATATCTCCTTTCCACGCGCCCTTTTTCGGTCAAAAAGGCACAG
CTCACACGCATGCGCATGCGTCGGGAGCGGGAGGTGGTGGGACTACCATG
CGATTCCATGCTCCGCCTTCCCTGTGTGCCGTACGATACACCCTGTGTGC
CGTACGATACATATGTATATATATATATACATAAGCAACTATATAACATG
AACAAACCAATAAATCGATAAATATATATACACATACAAGCAACCATATA
ACATGAATAAATCGACAAATGAATAAATAAACAGATAAACTTATATGTAG
ACACCGGAGTAAACAATGCAGGCCATGATTAGACTCGAATGACTTTTCAA
TTACCCAAGGCGGGGGCAAAAAGCCTATCACCGACGTGCGGGACCAATTA
ATAACTACACTTGAACTGAGCCGCTTCCGACTACATGCATGCACGAGGGA
GGGAAGGAGGAAGGGAGAAATGACATTATTGCGTACATGCACGAGGGAGG
GAAGGAGGAAAAGAGAAGATAAGTGGAACAGGACCTTCCTCTGACAGAAC
GCTCACTTTCACCGTCTTCCTTCATCTCATTCTCTCGATTTATACAAACA
GGGATCAAGGCCATCGTGAACGAAAAATTCGGGGATGGGATCATGTCCGC
GATTGACATGTACGCCACCGTCGAGAAAGTCAAGGGCTCGCAAGGCGAGG
ACCGAGTTTTGGTGACCCTGAATGGGAAATTTTTGCCCCATGTGGAGCAA
AGGGTTGAGAACAATGTGCAGGCACCGGTGGTCGAGGAGGGGGGGTTTAA
AAAAACAACGCGATAGTAGCAGCCGTAGGAGTAGCAGCAACCTTCCGGGA
ATGAAGGGAGGAAGGAAGGAGGAGGAGGGAGGGAGGGAAGGAGGGAGGGA
AGGAGGAGTACCTCTGGACGGTAGTCAGGATGTGAAGTAGAGGCAAGGAC
GCGGTAAGGAAATCAAGAGTAGAGATAGGAAAAGCAGGAAAAAGATAGAT
TAGAGCATATGTGAAAAAAATTGAAGAGCGACAGAGAGAGAGAGAGAGGG
AGACTTTGTGGAATATTGGAAGATGGGAGAAAAGAGACAGGAAGGATAAA
GAAAAAGTTTGATTAGGGCGATAGAAAGGAGAAAGAAAAACAACTAGTGG
TGTA
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protein sequence of NO11G00510.2

>NO11G00510.2-protein ID=NO11G00510.2-protein|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLSSFRLAVSRHVSSSSLRPSLLPTTSNATRRLATAFAEEDKAFHVSNLL
AAKKKAGLTFDEIAVETGLTNAYVAQLFYRQAHLKPETAKKMKAAVPTLT
TDDLEVMQEVPFRSYDRAVLRTEPLIYRLEEAVLHYGMGKNIVIYLISYF
IFIYYFILIYLFINKFMYP*
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mRNA from alignment at chr11:222831..226104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00510.2 ID=NO11G00510.2|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=mRNA|length=3274bp|location=Sequence derived from alignment at chr11:222831..226104- (Nannochloropsis oceanica)
GGGATTACGGCGATGGGACGAACAAGTGGCTCTTCCCCTTCCTTTCTTAC CACTTGCATGGACAGTTTGCGATGACACTAGCAATGGCATTAGCAGCATC ATTACCTTGCAGTCGCCTTTCTCATGCCCCCCGCTTGCGTTGACTTGTCT TGGTGGATGGATTGCTCGGCCGTGGACGGAGCTCGTCAACGTCCTGCCTA CTTTTCGATGCTCGTCTGTTCTGTGTATCTCTCTCCTTCGACATACAATT ACGCCAAAATCAAACGCAAAATCTCATCAACGGATAACTCTTTGTGTTCT TTGCGCTTTTCTACAATGTCTGCGGCATGCCAGCCTTTCAAAGGAATTTC CCCCCCCCCCCAGCAATGCTTAAGATACTCTCGTTCTACAAGGCATTTAA CCTCTCTGCCCGCCCATCCTCCCGTAACAACACAGAAACATAACCTCTTA TCAATCGTATTCAATAAAGTGTCTCAAGTAACATAAATGTTGTCATCCTT CCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTCTCTCCGTCCGTCCC TCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCGCCACAGCCTTTGCA GAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTAGCAGCCAAGAAAAA GGCAGGCTTAACATTCGACGAAATTGCGGTCGAGACGGGTTTGACAAATG CCTATGTCGCCCAGGTAGGTAGGAAAGGAGGTAAATGAGGGAGGGTGGTG AAGGGGGAGGAGAGCGGCGTTGAAACGCTTGCTCATTTTGTCGTTAACGG CCAAATGTGACCACGCTTAGACACAATCTCCAAATTTTATGAGCGGTCTC AGAACATTGGCGAGCAACAGCACTCACCCTTTCCTACCTCACTCCCTCTC TTCTCTCTTCCTCCCGTCCTCCCTTCCTCCCTTCCTCCCTTTCTTTCTCT CTCCCTCCGTCATCCCCGAAGCTCTTCTACCGTCAGGCACACCTTAAGCC CGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACAACGGACG ACTTGGAAGTGATGCAGGAGGTAACGAACCACTGCGAAGGGAGGGGAGGA CGGAGGGTGAGAAGGAAATATAGAAAGAGAGGAATAAGAGAAGGCTTACT CCTTTGATCGATATTATAAATATACGTACATGGAATTCTTTAGGTGCCTT TCAGGTCGTATGATCGTGCCGTGTTGCGGACTGAGCCTTTGATATACAGG CTGGAGGAAGCTGTGCTGCACTATGGCATGGGTAAGAACATTGTTATTTA TTTAATTTCATATTTCATATTTATATATTATTTTATCTTAATCTACCTGT TTATAAATAAATTCATGTACCCTTAACAATCGACATGTAAAAAAAGGGAA GGAGATTCGTGCAAGGAAACGAAAAAGCCAAATCAGAGATGGATGCGAGG GAGGGGAAGAGGAAGGGAGGGGAAGAGGGGAAGAGGGAGCGAGGGATAGA AAGAGGTCGGGAGGAAAGCATACTCCAAAAGTGTTTTACACAATGACCGG TCTTCCGGGTCGTTGACACTGTGCATTTCCTCCCTATCTTCCTCTCCTCT CCTGCTTTCCTTTCCTCTCTCTTCACCCTTTCTTTTCTCCTTCCCTCCCT CCCTCCTTGATGACACACTTTTGCGTGCACCAAGAAGAGTACTTAAGTAA TTGGTGGGCATGCCCCTTTGAGCGCGGATCAGGCCTATATCTATTTCTCC ATCCTCATTACGTATCCATATCTCCCGTATCTTCCCTTCTTATTCCTCCC TCCCTCCTCTTGTTCTGCCTCCTCCCTCCTTTTTTACCGTCCTTTTCTGT TCTGATGTAAGATATATGTAAATATCATGACTGTCATATATCTCCTTTCC ACGCGCCCTTTTTCGGTCAAAAAGGCACAGCTCACACGCATGCGCATGCG TCGGGAGCGGGAGGTGGTGGGACTACCATGCGATTCCATGCTCCGCCTTC CCTGTGTGCCGTACGATACACCCTGTGTGCCGTACGATACATATGTATAT ATATATATACATAAGCAACTATATAACATGAACAAACCAATAAATCGATA AATATATATACACATACAAGCAACCATATAACATGAATAAATCGACAAAT GAATAAATAAACAGATAAACTTATATGTAGACACCGGAGTAAACAATGCA GGCCATGATTAGACTCGAATGACTTTTCAATTACCCAAGGCGGGGGCAAA AAGCCTATCACCGACGTGCGGGACCAATTAATAACTACACTTGAACTGAG CCGCTTCCGACTACATGCATGCACGAGGGAGGGAAGGAGGAAGGGAGAAA TGACATTATTGCGTACATGCACGAGGGAGGGAAGGAGGAAAAGAGAAGAT AAGTGGAACAGGACCTTCCTCTGACAGAACGCTCACTTTCACCGTCTTCC TTCATCTCATTCTCTCGATTTATACAAACAGGGATCAAGGCCATCGTGAA CGAAAAATTCGGGGATGGTACGTCCTTTCGGGCATGGGGATGCTTTCCCT CCCTCCCTCCCTCCCTCCTCCCATCCCCCCCTCCCTCTCTCCCTCCCTCC CTCCCTCCCTCCAATCCTTCCTTCTCTTACTCGCCCTTGACCTCCCACCC CCCCCACACTCTCTCTTTTACTTTCTATTACAAAAAATGAAACATGATTG TGTTTCATCCCCTTTCCTTCCCCTCCCTCCCCTCCCTCCTCTTCGCCCTG CCCTCAGGGATCATGTCCGCGATTGACATGTACGCCACCGTCGAGAAAGT CAAGGGCTCGCAAGGCGAGGACCGAGTTTTGGTGACCCTGAATGGGAAAT TTTTGCCCCATGTGGAGCAAAGGGTTGAGAACAATGTGCAGGCACCGGTG GTCGAGGAGGGGGGGTTTAAAAAAACAACGCGATAGTAGCAGCCGTAGGA GTAGCAGCAACCTTCCGGGAATGAAGGGAGGAAGGAAGGAGGAGGAGGGA GGGAGGGAAGGAGGGAGGGAAGGAGGAGTACCTCTGGACGGTAGTCAGGA TGTGAAGTAGAGGCAAGGACGCGGTAAGGAAATCAAGAGTAGAGATAGGA AAAGCAGGAAAAAGATAGATTAGAGCATATGTGAAAAAAATTGAAGAGCG ACAGAGAGAGAGAGAGAGGGAGACTTTGTGGAATATTGGAAGATGGGAGA AAAGAGACAGGAAGGATAAAGAAAAAGTTTGATTAGGGCGATAGAAAGGA GAAAGAAAAACAACTAGTGGTGTA
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Coding sequence (CDS) from alignment at chr11:222831..226104-

>NO11G00510.2 ID=NO11G00510.2|Name=NO11G00510.2|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr11:222831..226104- (Nannochloropsis oceanica)
ATGTTGTCATCCTTCCGCCTTGCCGTGTCTCGTCATGTGTCCTCGTCCTC
TCTCCGTCCGTCCCTCCTTCCCACCACCAGCAACGCAACCCGTCGTCTCG
CCACAGCCTTTGCAGAGGAAGACAAAGCCTTCCATGTATCTAACCTGTTA
GCAGCCAAGAAAAAGGCAGGCTTAACATTCGACGAAATTGCGGTCGAGAC
GGGTTTGACAAATGCCTATGTCGCCCAGCTCTTCTACCGTCAGGCACACC
TTAAGCCCGAGACCGCAAAGAAAATGAAGGCAGCCGTGCCAACTCTCACA
ACGGACGACTTGGAAGTGATGCAGGAGGTGCCTTTCAGGTCGTATGATCG
TGCCGTGTTGCGGACTGAGCCTTTGATATACAGGCTGGAGGAAGCTGTGC
TGCACTATGGCATGGGTAAGAACATTGTTATTTATTTAATTTCATATTTC
ATATTTATATATTATTTTATCTTAATCTACCTGTTTATAAATAAATTCAT
GTACCCTTAA
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Synonyms
Publications