NO11G00470.1, NO11G00470.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00470.1
Unique Name	NO11G00470.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1955
Alignment location	chr11:212414..214368 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:212414..214368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO11G00470.1 vs.
Match: XP_015761989.1 (PREDICTED: uncharacterized protein LOC107341078 [Acropora digitifera])

HSP 1 Score: 132.1 bits (331), Expect = 4.600e-27
Identity = 95/302 (31.46%), Postives = 161/302 (53.31%), Query Frame = 0

Query:   26 LLLLALSPSFLLLTHAQPDTPGYREGWSLTQFPNPTGNSKNSKTSTTYSCGAFHVEAKESTSFLCDPDALLSKKGAIAVHEMLDTIRGELKVSCPGEGGGGEEGQAPAQQQQKGLQVGVALVHKLKRTKHD-VVEEAEGFARALHGMWGVGDLACQNGVLLFLSRVDRTMYISRGKGVENLLTDDRIDQVMSDVKGLLRGGDWDGGVLMAVGKVAEWVDMGPPGFWERWGGTVVMLLVVIAFLSFAMWQERQKYLDRRGYEDAKRKLERIEREQSRLQSLELAESFEGLESCPICLEDFGEE 327
            ++ LA+   FLL+   Q +     E W+  +FPNPT N +        +CG      +   S++CDP+++LS + A  + E+L ++R      C        +G+ P      G Q+GVA++++++    + V + AE FA+ LH  WGVG+  C +G +L +S  DR +Y+S G+G   +LTDD+ID ++ ++K  LR  ++D  V +AV K+ E V  G         G ++  LV++  +  A++   ++  D    E+   KL+RI+ E+ R +      S+E  +SCPICLE+F  E
Sbjct:    6 VVFLAVCGIFLLVQRGQSN-----EQWAKEEFPNPTINLE--------ACGR-----RGKVSWICDPESILSYESANNIEELLYSVRKNTNSGC-------SKGENP------GFQIGVAVLNRMRSNSDESVAKTAEKFAKHLHDSWGVGNAGCDDGAVLLISTDDRQVYMSTGRGATKVLTDDQIDLIIEEMKPHLRDKNYDKSVEVAVTKMGE-VFSGKVLESSLDYGLILFFLVIVTGVGLAIYLVHRRDQD---IENCTLKLQRIQDERDRAK-----HSYE-TKSCPICLEEFEPE 266

The following BLAST results are available for this feature:

BLAST of NO11G00470.1 vs.

BLAST of NO11G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_015761989.1	4.600e-27	31.46	PREDICTED: uncharacterized protein LOC107341078 [A...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00470	NO11G00470	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00470.1	NO11G00470.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00470.1.cds1	NO11G00470.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:212414..214368+
coding sequence from alignment at chr11:212414..214368+

mRNA sequence

>NO11G00470.1 ID=NO11G00470.1|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp
ATGGCCCAGCGCCTCTCTCCACACCCGAGAACCCGGCGGCCTTGCACACC
CCTCATCAACTTCGCACTCCGTCTCCTCCTTCTTCTGGCTTTGAGTCCCT
CGTTCCTCCTCCTCACCCATGCGCAACCCGACACGCCGGGGTACCGCGAG
GGATGGAGTTTAACCCAATTTCCCAACCCGACGGGCAACAGCAAGAACAG
CAAGACTAGCACCACCTACAGCTGCGGGGCTTTCCACGTGGAGGCGAAAG
AAAGCACGTCTTTCCTCTGTGACCCAGACGCGCTATTGTCGAAAAAAGGT
GCGATCGCCGTGCATGAAATGCTGGATACCATCCGAGGCGAGTTGAAGGT
TTCATGTCCCGGAGAGGGGGGGGGCGGGGAGGAAGGACAAGCGCCGGCGC
AACAGCAACAAAAGGGCTTGCAAGTCGGAGTTGCCCTGGTGCATAAATTG
AAGAGGACGAAGCATGACGTGGTGGAGGAAGCAGAGGGCTTCGCGCGGGC
GTTGCATGGTATGTGGGGGGTGGGGGATCTGGCGTGCCAGAACGGGGTGC
TACTATTCCTATCCCGCGTGGACAGAACCATGTATATATCTCGAGGTAAG
GGCGTCGAGAATTTATTGACAGACGACAGGATCGACCAGGTGATGAGTGA
TGTGAAGGGCCTTCTGAGAGGGGGTGATTGGGACGGGGGGGTGTTAATGG
CAGTGGGGAAAGTGGCCGAGTGGGTCGATATGGGCCCACCGGGCTTCTGG
GAGAGATGGGGAGGGACGGTGGTGATGCTCTTGGTGGTGATTGCATTCCT
ATCGTTCGCGATGTGGCAGGAAAGACAGAAGTATTTGGATCGGAGAGGGT
ATGAAGACGCAAAGAGGAAATTGGAGAGGATTGAGAGGGAGCAGTCACGG
TTGCAGTCCCTCGAGCTGGCCGAGTCGTTTGAAGGGTTGGAGAGCTGCCC
CATCTGCTTGGAAGATTTCGGGGAGGAGGAGGGGAAGGAGGAGGAGGAGG
AAGAGAGGGAAGAGGAGAGGCAGGGGTTGGTGAGGAGGAGTGGGAGTGGG
GAAGAGAAGGGGGAGAGGGAGAGCGAGGGCGAGGAGGTAATATTGGGGGA
GGGAAGGAGGAGGAGGAGGGAGAAGAAGGGGAGTGATGGGAAGCGGGTCA
GTATATTGGGATGTGGGCATGCGTATTGTCGGAGCTGTTTACTGATGGCA
TTGGAGAGGGAGAGGGTGCCACGTTGTCCCATTTGTAGGAGGACGCTCGA
TGAAGGGATGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGAG
GAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGAGATGGAGGAG
TGGATAGGGGGGAAGGAGAGGGAAGAGGGACTGGAGGAGGAGGAGGAGGA
GGGGGTGGTGGTGAAGGGACAAGAGCAGGGACGAGTGGAGGGCCATGTCG
GGTAGATGACAGCAGCAGTAACAGAAGCCGCAGTAGTGGTGTAGGCATTG
GGTCTACGATCTCCTTGGGACGAGGAAGGGGAGGAGGAGGAGGGGCTAGA
GCAAGAAGATTGTTTGCAGAGGCAGAGATTTTGTATCGGCTTAGCCAGTT
GCAGCGACAACACCCTAACATTGTGCGGCCGGAGATGGTTACACGATGGA
CTCAACCAGGGGGGTATACAGGCAGATTTACCGCTGATGCGAGCTTTGTC
GATGCAAATCCGCGTGTGCAATTTGCGCGACAGCAGGCTCACTATGGGTC
GTCGGTGCGGATGGGCGGGATAGGGGCAGGGGAGAGGAGGGGGTTTGGAG
GAGGGATGAGCAGTGGGGGTAGGGGAAGTCGGTGGTAGAGGGGAATTGAA
GGGAGGAAAGAAGAAAAGAAAGAGTGAGAATGAATGGGTGATAGATGGAC
AACAAAAGAAATAGAGTGACAAGTAAGACAATGGATGACTGAACATAGAA
AGAAG

protein sequence of NO11G00470.1

>NO11G00470.1-protein ID=NO11G00470.1-protein|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MAQRLSPHPRTRRPCTPLINFALRLLLLLALSPSFLLLTHAQPDTPGYRE
GWSLTQFPNPTGNSKNSKTSTTYSCGAFHVEAKESTSFLCDPDALLSKKG
AIAVHEMLDTIRGELKVSCPGEGGGGEEGQAPAQQQQKGLQVGVALVHKL
KRTKHDVVEEAEGFARALHGMWGVGDLACQNGVLLFLSRVDRTMYISRGK
GVENLLTDDRIDQVMSDVKGLLRGGDWDGGVLMAVGKVAEWVDMGPPGFW
ERWGGTVVMLLVVIAFLSFAMWQERQKYLDRRGYEDAKRKLERIEREQSR
LQSLELAESFEGLESCPICLEDFGEEEGKEEEEEEREEERQGLVRRSGSG
EEKGERESEGEEVILGEGRRRRREKKGSDGKRVSILGCGHAYCRSCLLMA
LERERVPRCPICRRTLDEGMSGGGGGGGGGGAGGGGGGGGGGGGREEMEE
WIGGKEREEGLEEEEEEGVVVKGQEQGRVEGHVG*

mRNA from alignment at chr11:212414..214368+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00470.1 ID=NO11G00470.1|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp|location=Sequence derived from alignment at chr11:212414..214368+ (Nannochloropsis oceanica)
ATGGCCCAGCGCCTCTCTCCACACCCGAGAACCCGGCGGCCTTGCACACC
CCTCATCAACTTCGCACTCCGTCTCCTCCTTCTTCTGGCTTTGAGTCCCT
CGTTCCTCCTCCTCACCCATGCGCAACCCGACACGCCGGGGTACCGCGAG
GGATGGAGTTTAACCCAATTTCCCAACCCGACGGGCAACAGCAAGAACAG
CAAGACTAGCACCACCTACAGCTGCGGGGCTTTCCACGTGGAGGCGAAAG
AAAGCACGTCTTTCCTCTGTGACCCAGACGCGCTATTGTCGAAAAAAGGT
GCGATCGCCGTGCATGAAATGCTGGATACCATCCGAGGCGAGTTGAAGGT
TTCATGTCCCGGAGAGGGGGGGGGCGGGGAGGAAGGACAAGCGCCGGCGC
AACAGCAACAAAAGGGCTTGCAAGTCGGAGTTGCCCTGGTGCATAAATTG
AAGAGGACGAAGCATGACGTGGTGGAGGAAGCAGAGGGCTTCGCGCGGGC
GTTGCATGGTATGTGGGGGGTGGGGGATCTGGCGTGCCAGAACGGGGTGC
TACTATTCCTATCCCGCGTGGACAGAACCATGTATATATCTCGAGGTAAG
GGCGTCGAGAATTTATTGACAGACGACAGGATCGACCAGGTGATGAGTGA
TGTGAAGGGCCTTCTGAGAGGGGGTGATTGGGACGGGGGGGTGTTAATGG
CAGTGGGGAAAGTGGCCGAGTGGGTCGATATGGGCCCACCGGGCTTCTGG
GAGAGATGGGGAGGGACGGTGGTGATGCTCTTGGTGGTGATTGCATTCCT
ATCGTTCGCGATGTGGCAGGAAAGACAGAAGTATTTGGATCGGAGAGGGT
ATGAAGACGCAAAGAGGAAATTGGAGAGGATTGAGAGGGAGCAGTCACGG
TTGCAGTCCCTCGAGCTGGCCGAGTCGTTTGAAGGGTTGGAGAGCTGCCC
CATCTGCTTGGAAGATTTCGGGGAGGAGGAGGGGAAGGAGGAGGAGGAGG
AAGAGAGGGAAGAGGAGAGGCAGGGGTTGGTGAGGAGGAGTGGGAGTGGG
GAAGAGAAGGGGGAGAGGGAGAGCGAGGGCGAGGAGGTAATATTGGGGGA
GGGAAGGAGGAGGAGGAGGGAGAAGAAGGGGAGTGATGGGAAGCGGGTCA
GTATATTGGGATGTGGGCATGCGTATTGTCGGAGCTGTTTACTGATGGCA
TTGGAGAGGGAGAGGGTGCCACGTTGTCCCATTTGTAGGAGGACGCTCGA
TGAAGGGATGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGAG
GAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGAGATGGAGGAG
TGGATAGGGGGGAAGGAGAGGGAAGAGGGACTGGAGGAGGAGGAGGAGGA
GGGGGTGGTGGTGAAGGGACAAGAGCAGGGACGAGTGGAGGGCCATGTCG
GGTAGATGACAGCAGCAGTAACAGAAGCCGCAGTAGTGGTGTAGGCATTG
GGTCTACGATCTCCTTGGGACGAGGAAGGGGAGGAGGAGGAGGGGCTAGA
GCAAGAAGATTGTTTGCAGAGGCAGAGATTTTGTATCGGCTTAGCCAGTT
GCAGCGACAACACCCTAACATTGTGCGGCCGGAGATGGTTACACGATGGA
CTCAACCAGGGGGGTATACAGGCAGATTTACCGCTGATGCGAGCTTTGTC
GATGCAAATCCGCGTGTGCAATTTGCGCGACAGCAGGCTCACTATGGGTC
GTCGGTGCGGATGGGCGGGATAGGGGCAGGGGAGAGGAGGGGGTTTGGAG
GAGGGATGAGCAGTGGGGGTAGGGGAAGTCGGTGGTAGAGGGGAATTGAA
GGGAGGAAAGAAGAAAAGAAAGAGTGAGAATGAATGGGTGATAGATGGAC
AACAAAAGAAATAGAGTGACAAGTAAGACAATGGATGACTGAACATAGAA
AGAAG

Coding sequence (CDS) from alignment at chr11:212414..214368+

>NO11G00470.1 ID=NO11G00470.1|Name=NO11G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr11:212414..214368+ (Nannochloropsis oceanica)
ATGGCCCAGCGCCTCTCTCCACACCCGAGAACCCGGCGGCCTTGCACACC
CCTCATCAACTTCGCACTCCGTCTCCTCCTTCTTCTGGCTTTGAGTCCCT
CGTTCCTCCTCCTCACCCATGCGCAACCCGACACGCCGGGGTACCGCGAG
GGATGGAGTTTAACCCAATTTCCCAACCCGACGGGCAACAGCAAGAACAG
CAAGACTAGCACCACCTACAGCTGCGGGGCTTTCCACGTGGAGGCGAAAG
AAAGCACGTCTTTCCTCTGTGACCCAGACGCGCTATTGTCGAAAAAAGGT
GCGATCGCCGTGCATGAAATGCTGGATACCATCCGAGGCGAGTTGAAGGT
TTCATGTCCCGGAGAGGGGGGGGGCGGGGAGGAAGGACAAGCGCCGGCGC
AACAGCAACAAAAGGGCTTGCAAGTCGGAGTTGCCCTGGTGCATAAATTG
AAGAGGACGAAGCATGACGTGGTGGAGGAAGCAGAGGGCTTCGCGCGGGC
GTTGCATGGTATGTGGGGGGTGGGGGATCTGGCGTGCCAGAACGGGGTGC
TACTATTCCTATCCCGCGTGGACAGAACCATGTATATATCTCGAGGTAAG
GGCGTCGAGAATTTATTGACAGACGACAGGATCGACCAGGTGATGAGTGA
TGTGAAGGGCCTTCTGAGAGGGGGTGATTGGGACGGGGGGGTGTTAATGG
CAGTGGGGAAAGTGGCCGAGTGGGTCGATATGGGCCCACCGGGCTTCTGG
GAGAGATGGGGAGGGACGGTGGTGATGCTCTTGGTGGTGATTGCATTCCT
ATCGTTCGCGATGTGGCAGGAAAGACAGAAGTATTTGGATCGGAGAGGGT
ATGAAGACGCAAAGAGGAAATTGGAGAGGATTGAGAGGGAGCAGTCACGG
TTGCAGTCCCTCGAGCTGGCCGAGTCGTTTGAAGGGTTGGAGAGCTGCCC
CATCTGCTTGGAAGATTTCGGGGAGGAGGAGGGGAAGGAGGAGGAGGAGG
AAGAGAGGGAAGAGGAGAGGCAGGGGTTGGTGAGGAGGAGTGGGAGTGGG
GAAGAGAAGGGGGAGAGGGAGAGCGAGGGCGAGGAGGTAATATTGGGGGA
GGGAAGGAGGAGGAGGAGGGAGAAGAAGGGGAGTGATGGGAAGCGGGTCA
GTATATTGGGATGTGGGCATGCGTATTGTCGGAGCTGTTTACTGATGGCA
TTGGAGAGGGAGAGGGTGCCACGTTGTCCCATTTGTAGGAGGACGCTCGA
TGAAGGGATGAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGGAG
GAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGAGGAGATGGAGGAG
TGGATAGGGGGGAAGGAGAGGGAAGAGGGACTGGAGGAGGAGGAGGAGGA
GGGGGTGGTGGTGAAGGGACAAGAGCAGGGACGAGTGGAGGGCCATGTCG
GGTAG

Synonyms

Publications