NO11G00390.1, NO11G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00390.1
Unique NameNO11G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length730
Alignment locationchr11:168342..169256 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:168342..169256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00390NO11G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00390.1NO11G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00390.1.cds1NO11G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00390.1.cds2NO11G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00390.1 ID=NO11G00390.1|Name=NO11G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
CTTTACATATATTGCACACGACAGTGGCCTGTGTCAAGCCCTTCCGGGTA
GTGGTGCGTGCGCTGTACCCACACGACGGCGACGACATCACAAGCCAGTC
CAAGGCACCAACTCTTCTTTCAGAGTCGGACTGGTTGGGATGGAAGAGTG
TCCTGTTCCTTCCTGATGCCCCGTGATGATCATTCCAGCGACCGACGAAT
TGTTAAGAAAAAAAAGCATAGCCATGTCTAACCCTAGACAGTACCAATCC
GATCCAGTAGGCCAAAACTCTTATGGTGTAATATCACGTGGCTTAACTTT
CCAATATGGATTTTTGGGCAGTCTGTTTTGCTTTGTAGCTCTGCAGGTGC
ACAACTGCGCTAAAAATGAACAAAAGTTGGATGTCGTATCGTTTGAGAGG
CATGGGGGTACCCTTGGGAACGTTCACCATGATGCTTAGGCGGGTGTCAA
TGTTTGTTTGGGGGGCTGAAAGACGATGTGGAGGGACCACGGGTGACCAA
TGGGCATGAAGGTGTTATTGTGAAAAATAAAATTATACAGGAATCATTAA
CAGGGATGATCGCGTGCCAAAAAGGTGGCGAGAGTGCGGTTGAGCAGTGT
CATCTTCCAAAAAGGGATCTGAGGAGTCGATTTTCAGTTTTCGAAAAATA
AAACGTTGAGGGGAAGCGGTGACCGTTGAGTGAATGCAGCCAAAGCAATG
CCATACAACATCCACAGCTATTTGTTCGAA
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protein sequence of NO11G00390.1

>NO11G00390.1-protein ID=NO11G00390.1-protein|Name=NO11G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MIIPATDELLRKKSIAMSNPRQYQSDPVGQNSYGVISRGLTFQYGFLGSL
FCFVALQVHNCAKNEQKLDVVSFERHGGTLGNVHHDA*
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mRNA from alignment at chr11:168342..169256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00390.1 ID=NO11G00390.1|Name=NO11G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp|location=Sequence derived from alignment at chr11:168342..169256+ (Nannochloropsis oceanica)
CTTTACATATATTGCACACGACAGTGGCCTGTGTCAAGCCCTTCCGGGTA
GTGGTGCGTGCGCTGTACCCACACGACGGCGACGACATCACAAGCCAGTC
CAAGGCACCAACTCTTCTTTCAGAGTCGGACTGGTTGGGATGGAAGAGTG
TCCTGTTCCTTCCTGATGCCCCGTGATGATCATTCCAGCGACCGACGAAT
TGTTAAGAAAAAAAAGCATAGCCATGTCTAACCCTAGGTATGTAATCCCT
GGGACAAAATGTATCTCCAAGCAAGCGGTGGATGGGTAGGAGAGCGGAGG
GACGCGAGATCTACGGGGCGGCACGGCATGGATTCTGTCGTGGATGGCCC
CCTCGGTACACATTTTGCCATGCGGGAGGCCAAGAGATGATTTCCCTGTC
GCCCTCTACCTTTTACAAACAGACAGTACCAATCCGATCCAGTAGGCCAA
AACTCTTATGGTGTAATATCACGTGGCTTAACTTTCCAATATGGATTTTT
GGGCAGTCTGTTTTGCTTTGTAGCTCTGCAGGTGCACAACTGCGCTAAAA
ATGAACAAAAGTTGGATGTCGTATCGTTTGAGAGGCATGGGGGTACCCTT
GGGAACGTTCACCATGATGCTTAGGCGGGTGTCAATGTTTGTTTGGGGGG
CTGAAAGACGATGTGGAGGGACCACGGGTGACCAATGGGCATGAAGGTGT
TATTGTGAAAAATAAAATTATACAGGAATCATTAACAGGGATGATCGCGT
GCCAAAAAGGTGGCGAGAGTGCGGTTGAGCAGTGTCATCTTCCAAAAAGG
GATCTGAGGAGTCGATTTTCAGTTTTCGAAAAATAAAACGTTGAGGGGAA
GCGGTGACCGTTGAGTGAATGCAGCCAAAGCAATGCCATACAACATCCAC
AGCTATTTGTTCGAA
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Coding sequence (CDS) from alignment at chr11:168342..169256+

>NO11G00390.1 ID=NO11G00390.1|Name=NO11G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at chr11:168342..169256+ (Nannochloropsis oceanica)
ATGATCATTCCAGCGACCGACGAATTGTTAAGAAAAAAAAGCATAGCCAT
GTCTAACCCTAGACAGTACCAATCCGATCCAGTAGGCCAAAACTCTTATG
GTGTAATATCACGTGGCTTAACTTTCCAATATGGATTTTTGGGCAGTCTG
TTTTGCTTTGTAGCTCTGCAGGTGCACAACTGCGCTAAAAATGAACAAAA
GTTGGATGTCGTATCGTTTGAGAGGCATGGGGGTACCCTTGGGAACGTTC
ACCATGATGCTTAG
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Synonyms
Publications