NO11G00380.1, NO11G00380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00380.1
Unique NameNO11G00380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1932
Alignment locationchr11:165346..167794 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:165346..167794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00380.1 vs.
Match: XP_005854544.1 (riboflavin kinase [Nannochloropsis gaditana CCMP526]; EKU21816.1 riboflavin kinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 516.5 bits (1329), Expect = 9.500e-143
Identity = 291/502 (57.97%), Postives = 347/502 (69.12%), Query Frame = 0 
Query:   36 YLSLAAALAVLLTRRSSPLLAVHAWKGPPSHSAPLAFSCLQPRRGTCRPLSPGGRGNR---WRLSGSLDGHKETIYGLHDSFETRPSSLLSSSLSSSRDVAAEEEKRAAHNEKQASVFDESARFFSGTEATPADVVPRLHTIVRAATLSPSSCVLDIGTGTGVLLP----YFKEEGGVEEGQVVGVDVSSGMLAVARKRFPRAEFWEGDVLDFAEAWLKGRGANGELFDAVFFNACFGNVYDQERALREVGRVMGREGRVVISHPLGAAFVDELKRRSPSVVLKSLPKDEGEWKHLLRFTPLQLTSFLSTPSIYLALLHHRPHQALPRALLLQGPVSQGYGRGSKKLGIPTANLPSSLFIIKSYLDLLPTGVYCGWARVRAETYKAVVNVGYSPTFEGKENKEKIVEAHLIEGGFERDFYGEKMTLVLAGFQRPERKFRSFPALVEAINQDVQDAKNALEGLDSVYANARRLVDME-ELEGEE------GEGKARWVPFEEW 524
            + + AA  AVLL   +       AW  P S S  L  S +       R L       R   W+ S SLD HKE +YG+HDSFE R +S    S    +D A EE++RA+HNEKQASVFDE+A      EATP DV+PRL  I  AA L P+  VLD+GTGTG LLP    Y  E  G  E ++VG+D+S+GML VAR+ FPRA FW+GDVLD    + +  G    LF AVFFNACFGNV+DQ RALREVG+++ + GRVVISHPLGA FV+EL+RRSPSVVL  LP+DE  W+ +L  TP QLTS  ST S+YLALL  RP Q LP+ALLLQGPVSQGY RGSKKLG PTANLPSSLF++KS ++ +P GVYCGWARV     KAVVN+GYSPTF+G+EN+EKIVEAHLI+G F  DFYGE MTL+L GF RPE+KF SFPALV AI QDV+DA+ A++    VYA A+RLV+ E E  GEE       +GK RWVPFEEW
Sbjct:   39 FRTYAAVCAVLLASFTCQSALAFAWGPPMSSSHSLLGSQIS------RSLVHDYHSRRMLVWQSSESLDFHKEKVYGMHDSFEGRAAS----STVWEKDSAEEEKRRASHNEKQASVFDEAAH----EEATPEDVIPRLRRIAEAAALRPTDRVLDVGTGTGALLPFLLPYLDENAG--EKRIVGMDLSAGMLVVARESFPRASFWQGDVLDLPVIYEREGGKEEGLFTAVFFNACFGNVFDQARALREVGKLVKKGGRVVISHPLGADFVEELRRRSPSVVLADLPRDEKAWRDILVTTPFQLTSLQSTSSLYLALLCRRPDQPLPQALLLQGPVSQGYKRGSKKLGFPTANLPSSLFVVKSLIEDIPVGVYCGWARVVGRECKAVVNIGYSPTFQGEENREKIVEAHLIDGAFPGDFYGELMTLILTGFLRPEQKFPSFPALVAAIQQDVEDARVAMDL--PVYAGAKRLVEEEGEGTGEEERGNGASKGKGRWVPFEEW 522
The following BLAST results are available for this feature:
BLAST of NO11G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854544.19.500e-14357.97riboflavin kinase [Nannochloropsis gaditana CCMP52... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00380NO11G00380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00380.1NO11G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00380.1.cds1NO11G00380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00380.1.cds2NO11G00380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00380.1.cds3NO11G00380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00380.1.cds4NO11G00380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00380.1 ID=NO11G00380.1|Name=NO11G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
TAGGGATATGACCATGGTGGGGGCCTTCCTTTTGCTTGAAATGTTTCGCC
CGAGTCACTCCTTCGCTACGTCCTTTTGGACGACTGCCATCTATGCAGGA
TACAGAGGGAAGTGGACACGAAGTCTCTGTTGGACTCAGAGCGAGTTGCG
GGTATGACGGAGGTATTTCACCCCGCGCACCAAAACGCAAACGACGGGCC
GTCACAACGGTTAGCATGCGTGCTTCTGCTTCTCCTCACTCAAAGTAGGC
CCACACACGCAACCACATCAACGACGCCCACGAATACACAGGCCGGAAAT
TATGCCCTCCCTGTGGTGCAGAGCTAGCCGCCGCCGGGGCCGCGACCGTC
TATATTTCAGAAACCTCCCTTTGACACCAGTTGCACTTCCTCGACGGTTG
ACTTCCTACTTGAGTCTGGCCGCCGCCCTTGCAGTTCTACTCACCCGAAG
GTCCTCGCCGCTCCTTGCAGTGCACGCATGGAAAGGGCCACCCTCTCACT
CGGCGCCACTCGCGTTTTCTTGTTTACAGCCGCGACGAGGTACCTGCCGT
CCTCTTTCCCCTGGAGGACGAGGGAATAGGTGGCGCCTATCAGGATCCCT
GGACGGGCATAAGGAAACGATCTATGGGCTGCATGACAGTTTCGAAACAC
GTCCTTCCTCCCTCCTTTCCTCCTCCCTTTCCTCCTCAAGAGATGTGGCC
GCAGAGGAAGAAAAACGTGCGGCCCATAACGAGAAACAAGCCAGTGTCTT
CGACGAGTCAGCACGCTTTTTCTCCGGCACCGAAGCTACACCCGCTGATG
TCGTGCCTCGCCTTCACACCATCGTTCGCGCCGCAACTCTCTCCCCTTCC
AGCTGCGTCTTGGACATAGGAACAGGGACGGGTGTCCTCCTCCCTTATTT
CAAGGAGGAGGGCGGGGTGGAGGAAGGGCAGGTGGTGGGGGTCGACGTGT
CCAGCGGCATGCTGGCCGTAGCTCGCAAGAGGTTTCCCCGCGCCGAATTC
TGGGAAGGAGACGTTCTTGATTTTGCAGAGGCATGGCTGAAAGGACGGGG
GGCGAATGGAGAGCTGTTTGATGCGGTGTTTTTTAATGCATGTTTTGGAA
ATGTTTACGATCAAGAGAGGGCGTTGAGGGAGGTGGGGAGGGTGATGGGG
AGGGAGGGAAGGGTGGTGATCTCGCACCCTTTGGGGGCTGCATTTGTGGA
TGAGCTTAAGAGGAGATCGCCGTCGGTGGTGTTAAAGAGCCTGCCGAAGG
ATGAGGGGGAGTGGAAGCACCTCCTGCGCTTCACCCCGCTCCAGCTCACC
TCCTTTCTCTCCACCCCCTCGATCTACCTCGCCCTCCTACACCACCGCCC
GCACCAAGCCCTCCCCCGCGCCCTGCTCCTCCAAGGCCCTGTCTCGCAAG
GATACGGTCGAGGGAGTAAGAAGCTGGGCATCCCAACCGCCAACCTCCCT
TCTTCCCTATTCATCATTAAGTCCTATTTAGACCTCCTCCCCACGGGTGT
TTATTGTGGCTGGGCCCGTGTGAGAGCAGAGACGTACAAGGCCGTCGTCA
ATGTTGGATATAGCCCTACCTTTGAAGGGAAAGAGAATAAGGAGAAGATT
GTAGAGGCACATTTGATCGAAGGGGGGTTTGAGAGAGATTTTTACGGGGA
GAAGATGACGTTGGTTTTGGCGGGCTTTCAGAGACCAGAGAGGAAATTTC
GGAGTTTCCCCGCATTGGTGGAGGCAATTAATCAGGACGTGCAGGATGCC
AAAAATGCCTTGGAAGGATTAGATTCTGTGTATGCGAATGCCAGGAGATT
GGTGGATATGGAGGAGCTAGAAGGGGAGGAGGGGGAGGGGAAGGCCAGGT
GGGTGCCATTCGAGGAGTGGAGCAGTGGGATGTAGGTTTGAGGGTGGGAA
AAGGAATAACAAATTCGTTGAATAAAATCAGA
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protein sequence of NO11G00380.1

>NO11G00380.1-protein ID=NO11G00380.1-protein|Name=NO11G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MPSLWCRASRRRGRDRLYFRNLPLTPVALPRRLTSYLSLAAALAVLLTRR
SSPLLAVHAWKGPPSHSAPLAFSCLQPRRGTCRPLSPGGRGNRWRLSGSL
DGHKETIYGLHDSFETRPSSLLSSSLSSSRDVAAEEEKRAAHNEKQASVF
DESARFFSGTEATPADVVPRLHTIVRAATLSPSSCVLDIGTGTGVLLPYF
KEEGGVEEGQVVGVDVSSGMLAVARKRFPRAEFWEGDVLDFAEAWLKGRG
ANGELFDAVFFNACFGNVYDQERALREVGRVMGREGRVVISHPLGAAFVD
ELKRRSPSVVLKSLPKDEGEWKHLLRFTPLQLTSFLSTPSIYLALLHHRP
HQALPRALLLQGPVSQGYGRGSKKLGIPTANLPSSLFIIKSYLDLLPTGV
YCGWARVRAETYKAVVNVGYSPTFEGKENKEKIVEAHLIEGGFERDFYGE
KMTLVLAGFQRPERKFRSFPALVEAINQDVQDAKNALEGLDSVYANARRL
VDMEELEGEEGEGKARWVPFEEWSSGM*
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mRNA from alignment at chr11:165346..167794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00380.1 ID=NO11G00380.1|Name=NO11G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2449bp|location=Sequence derived from alignment at chr11:165346..167794+ (Nannochloropsis oceanica)
TAGGGATATGACCATGGTGGGGGCCTTCCTTTTGCTTGAAATGTTTCGCC
CGAGTCACTCCTTCGCTACGTCCTTTTGGACGACTGCCATCTATGCAGGA
TACAGAGGGAAGTGGACACGAAGTCTCTGTTGGACTCAGAGCGAGTTGCG
GGTATGACGGAGGTATTTCACCCCGCGCACCAAAACGCAAACGACGGGCC
GTCACAACGGTTAGCATGCGTGCTTCTGCTTCTCCTCACTCAAAGTAGGC
CCACACACGCAACCACATCAACGACGCCCACGAATACACAGGCCGGAAAT
TATGCCCTCCCTGTGGTGCAGAGCTAGCCGCCGCCGGGGCCGCGACCGTC
TATATTTCAGAAACCTCCCTTTGACACCAGTTGCACTTCCTCGACGGTTG
ACTTCCTACTTGAGTCTGGCCGCCGCCCTTGCAGTTCTACTCACCCGAAG
GTCCTCGCCGCTCCTTGCAGTGCACGCATGGAAAGGGCCACCCTCTCACT
CGGCGCCACTCGCGTTTTCTTGTTTACAGCCGCGACGAGGGTACGTACAG
ATAAATAAGATACTTGCAACCTCCTTCATAGTCTGTCCTTGTCACGTTGC
CCGCTGATCCCCGCATGACAGGGGCATCAACGTCCACCCACCCTTAAATT
AGAAAAGGGCGGCCGGTCGGCCAAACCCAGCTGGTCTCCTTGTCGTGCTC
GTCCCACTTTGATAGCACCCTGCTCACTCCTTCCCCTCCCTTTCCCTCCT
TCCCTCCCCACAAATACATAGTACCTGCCGTCCTCTTTCCCCTGGAGGAC
GAGGGAATAGGTGGCGCCTATCAGGATCCCTGGACGGGCATAAGGAAACG
ATCTATGGGCTGCATGACAGTTTCGAAACACGTCCTTCCTCCCTCCTTTC
CTCCTCCCTTTCCTCCTCAAGAGATGTGGCCGCAGAGGAAGAAAAACGTG
CGGCCCATAACGAGAAACAAGCCAGTGTCTTCGACGAGTCAGCACGGTAA
GAGACGATGGATGAGACGAAACACCCGCGAATCATCCTTTTCTTTTGTCT
TTTCAACCGCACTGGCTCACCCTTCAGCCGTCACTTCCTCCCTCCCCCCA
TCTCATTCCCTCAGCTTTTTCTCCGGCACCGAAGCTACACCCGCTGATGT
CGTGCCTCGCCTTCACACCATCGTTCGCGCCGCAACTCTCTCCCCTTCCA
GCTGCGTCTTGGACATAGGAACAGGGACGGGTGTCCTCCTCCCTTATTTC
AAGGAGGAGGGCGGGGTGGAGGAAGGGCAGGTGGTGGGGGTCGACGTGTC
CAGCGGCATGCTGGCCGTAGCTCGCAAGAGGTTTCCCCGCGCCGAATTCT
GGGAAGGAGACGTTCTTGATTTTGCAGAGGCATGGCTGAAAGGACGGGGG
GCGAATGGAGAGCTGTTTGATGCGGTGTTTTTTAATGCATGTTTTGGAAA
TGTTTACGATCAAGAGAGGGCGTTGAGGGAGGTGGGGAGGGTGATGGGGA
GGGAGGGAAGGGTGGTGATCTCGCACCCTTTGGGGGCTGCATTTGTGGAT
GAGCTTAAGAGGAGATCGCCGTCGGTGGTGTTAAAGAGCCTGCCGAAGGA
TGAGGGGGAGTGGAAGGTCGGGATGAAGGGAGGGAGGGAGAAAGGGAGGA
AGGGTTGGAGGGAGGGAGGGAGAGGGAAGGAAACTTGCACTTGAAACAAT
GCAAATGTCCGCATCATTCATTCAATCCTATATTTATCCCTCTCTCCTTT
TTTCTTACCCTCTCTGTCTCCCTCCGCAAACTAGCACCTCCTGCGCTTCA
CCCCGCTCCAGCTCACCTCCTTTCTCTCCACCCCCTCGATCTACCTCGCC
CTCCTACACCACCGCCCGCACCAAGCCCTCCCCCGCGCCCTGCTCCTCCA
AGGCCCTGTCTCGCAAGGATACGGTCGAGGGAGTAAGAAGCTGGGCATCC
CAACCGCCAACCTCCCTTCTTCCCTATTCATCATTAAGTCCTATTTAGAC
CTCCTCCCCACGGGTGTTTATTGTGGCTGGGCCCGTGTGAGAGCAGAGAC
GTACAAGGCCGTCGTCAATGTTGGATATAGCCCTACCTTTGAAGGGAAAG
AGAATAAGGAGAAGATTGTAGAGGCACATTTGATCGAAGGGGGGTTTGAG
AGAGATTTTTACGGGGAGAAGATGACGTTGGTTTTGGCGGGCTTTCAGAG
ACCAGAGAGGAAATTTCGGAGTTTCCCCGCATTGGTGGAGGCAATTAATC
AGGACGTGCAGGATGCCAAAAATGCCTTGGAAGGATTAGATTCTGTGTAT
GCGAATGCCAGGAGATTGGTGGATATGGAGGAGCTAGAAGGGGAGGAGGG
GGAGGGGAAGGCCAGGTGGGTGCCATTCGAGGAGTGGAGCAGTGGGATGT
AGGTTTGAGGGTGGGAAAAGGAATAACAAATTCGTTGAATAAAATCAGA
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Coding sequence (CDS) from alignment at chr11:165346..167794+

>NO11G00380.1 ID=NO11G00380.1|Name=NO11G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at chr11:165346..167794+ (Nannochloropsis oceanica)
ATGCCCTCCCTGTGGTGCAGAGCTAGCCGCCGCCGGGGCCGCGACCGTCT
ATATTTCAGAAACCTCCCTTTGACACCAGTTGCACTTCCTCGACGGTTGA
CTTCCTACTTGAGTCTGGCCGCCGCCCTTGCAGTTCTACTCACCCGAAGG
TCCTCGCCGCTCCTTGCAGTGCACGCATGGAAAGGGCCACCCTCTCACTC
GGCGCCACTCGCGTTTTCTTGTTTACAGCCGCGACGAGGTACCTGCCGTC
CTCTTTCCCCTGGAGGACGAGGGAATAGGTGGCGCCTATCAGGATCCCTG
GACGGGCATAAGGAAACGATCTATGGGCTGCATGACAGTTTCGAAACACG
TCCTTCCTCCCTCCTTTCCTCCTCCCTTTCCTCCTCAAGAGATGTGGCCG
CAGAGGAAGAAAAACGTGCGGCCCATAACGAGAAACAAGCCAGTGTCTTC
GACGAGTCAGCACGCTTTTTCTCCGGCACCGAAGCTACACCCGCTGATGT
CGTGCCTCGCCTTCACACCATCGTTCGCGCCGCAACTCTCTCCCCTTCCA
GCTGCGTCTTGGACATAGGAACAGGGACGGGTGTCCTCCTCCCTTATTTC
AAGGAGGAGGGCGGGGTGGAGGAAGGGCAGGTGGTGGGGGTCGACGTGTC
CAGCGGCATGCTGGCCGTAGCTCGCAAGAGGTTTCCCCGCGCCGAATTCT
GGGAAGGAGACGTTCTTGATTTTGCAGAGGCATGGCTGAAAGGACGGGGG
GCGAATGGAGAGCTGTTTGATGCGGTGTTTTTTAATGCATGTTTTGGAAA
TGTTTACGATCAAGAGAGGGCGTTGAGGGAGGTGGGGAGGGTGATGGGGA
GGGAGGGAAGGGTGGTGATCTCGCACCCTTTGGGGGCTGCATTTGTGGAT
GAGCTTAAGAGGAGATCGCCGTCGGTGGTGTTAAAGAGCCTGCCGAAGGA
TGAGGGGGAGTGGAAGCACCTCCTGCGCTTCACCCCGCTCCAGCTCACCT
CCTTTCTCTCCACCCCCTCGATCTACCTCGCCCTCCTACACCACCGCCCG
CACCAAGCCCTCCCCCGCGCCCTGCTCCTCCAAGGCCCTGTCTCGCAAGG
ATACGGTCGAGGGAGTAAGAAGCTGGGCATCCCAACCGCCAACCTCCCTT
CTTCCCTATTCATCATTAAGTCCTATTTAGACCTCCTCCCCACGGGTGTT
TATTGTGGCTGGGCCCGTGTGAGAGCAGAGACGTACAAGGCCGTCGTCAA
TGTTGGATATAGCCCTACCTTTGAAGGGAAAGAGAATAAGGAGAAGATTG
TAGAGGCACATTTGATCGAAGGGGGGTTTGAGAGAGATTTTTACGGGGAG
AAGATGACGTTGGTTTTGGCGGGCTTTCAGAGACCAGAGAGGAAATTTCG
GAGTTTCCCCGCATTGGTGGAGGCAATTAATCAGGACGTGCAGGATGCCA
AAAATGCCTTGGAAGGATTAGATTCTGTGTATGCGAATGCCAGGAGATTG
GTGGATATGGAGGAGCTAGAAGGGGAGGAGGGGGAGGGGAAGGCCAGGTG
GGTGCCATTCGAGGAGTGGAGCAGTGGGATGTAG
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Synonyms
Publications