NO11G00340.1, NO11G00340.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00340.1
Unique Name	NO11G00340.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4075
Alignment location	chr11:145965..152926 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:145965..152926 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO11G00340.1 vs.
Match: EWM27283.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 208.0 bits (528), Expect = 9.900e-50
Identity = 118/339 (34.81%), Postives = 202/339 (59.59%), Query Frame = 0

Query:    1 MLVPGILVVAASVLSWTAGKYNMSVLVSLGIGSVVYLSIKTLRDRLTRAATIYADRNAQRKRVIGDEESAEWINTVLWRFWQFYEPVLCQNLREAIQPALDANTPAGLKRLELGRLTLGKTPPFISSARLLLRDN-HHNEISESRIVLNLGLGFHAPDLEVVVAAKTVAASLPLAVKNVWFEGMLRVEIELVPDFPHAKTVLVTFLDKPIIDFSVIPLKSVNIFDLPGLSQFISNLIINGISENLVNPEKLVIDLI--PAECGPVEAAKGVLFVSV-------------DKAMYKETNALDVMSVGSSEVYAEIKVGKDVVRTQAVSNGKGEVLYAFGG 324
            +LVP ++      L W  G+   S   +L   ++V  ++  LR+RL RAA + A R A RKR++ ++E+AEW+N +L+R WQF+EP+L  NLR+     LDA  P+ +   E+   TLGK  PF+SSAR++ +     +++ E RIV++L +GF AP LE+V+ AKT   ++P+ +K+ + +G +R E++L+P +PH +T   TFL+ P+ +F + P+  V++ ++P L+  +   I++GI+E+L++P K+V +LI   +E   +EAA G++ V++               A  KE N     S+ +S    ++ VG DV+ T+ V   +G    ++GG
Sbjct:  105 ILVPAVMCGFLGPLCWVFGRQGWSYSYALWSSTLVIYAVYGLRERLRRAARMEATRIASRKRILQEDETAEWLNIILFRVWQFHEPLLSANLRQDFLQKLDAVRPSRVLAFEIPLFTLGKKSPFMSSARIITKTQFSDSKVPEDRIVMHLTMGFQAPGLEIVILAKTSYGTIPIKIKDFYLQGRMRCEMDLIPKYPHIQTASFTFLETPVCEFDIQPM-GVSLMEVPYLAAIVQAQIVHGINEHLLDPAKVVFNLIETQSEATSIEAADGIMLVTLLEVELPQGGRVFGSSAHPKENN-----SLAASAYNVKLHVGDDVMYTKNVREEEGAPEESWGG 437

The following BLAST results are available for this feature:

BLAST of NO11G00340.1 vs.

BLAST of NO11G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27283.1	9.900e-50	34.81	transmembrane protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00340	NO11G00340	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00340.1	NO11G00340.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00340.1.cds1	NO11G00340.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds2	NO11G00340.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds3	NO11G00340.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds4	NO11G00340.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds5	NO11G00340.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds6	NO11G00340.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds7	NO11G00340.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds8	NO11G00340.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds9	NO11G00340.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds10	NO11G00340.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds11	NO11G00340.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds12	NO11G00340.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds13	NO11G00340.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds14	NO11G00340.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00340.1.cds15	NO11G00340.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:145965..152926-
coding sequence from alignment at chr11:145965..152926-

mRNA sequence

>NO11G00340.1 ID=NO11G00340.1|Name=NO11G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=4075bp
TTTGTTCCTTCATGGACACCCAATCAAAATTAAGTGCGGCCCTGAGTCCT
TGTAAACTATCGATACATAAACATAAACACACGGCGTTAATCCGTGTGTA
TGCATCTTATCCCCTTCCCCATCCCCAATGGACTGCTGTTTGTTTCGTCC
TCTTTTCCTTCTTGCCCTCGACAGCGATAAAAGCTCAAGGCTCAAGCTGA
TATTTTCCTCCGAGCGGGCCGCGGACTGTATTCAGCCCTCTGTGTCCCAT
CCTCCTACCTCTCCCAAGGATTTTTCCCGATCCATTAAGCCTGCCTTAAC
AATCCTTCCCTCCAGTTCATTTGCTGAACCTGTCTGGCAGGGTTTTGGGC
TTCTAAGAGGGGTGCACATAATCCTTCCGTTGCTGCCTGCAGCGACGAGG
AAGCAGAACAAACAAGAAGATGATATGATATAGCGAATCCTTAATTCGCA
AGCCTTATCGACAACCAATACAGTCGTTCTCATGCCCCGTCGCCCCCAAT
ACCTAAACAGCAGGTTAAAGCAGCCAACAAGCCGCTTCACGCAGGGTTTT
TCGCCTGTCTTAGCCCCCTCAAACTCCAATCGACCTCCTCATCCCTCCAC
TTTCCCCTGTTACCATGGCTACTGGCACTGCCCCCTCCAAGCTGGATGAG
AATGCGCGCAGCAATGATGCCGCAACCAAAAATCTTACTGACGCCGGCGC
CGCCGCCGAGAACGCCGTGGCTTCTGCCTCTGCTGCCGCTTCCAATGAGA
TGACCCCTCTCGTCACTCCCACCCCCCACCTGCTGCGCCAGCCCCAGACA
AAAAGTCCGCTGCCAAGCCCGCGCCTGCGTTCAAGAGCCCCCTTGCCGTG
TCAGAACCGACGAAGGAAATGCTTGTCCCGGGTATCTTAGTCGTGGCGGC
CTCGGTCCTCTCCTGGACGGCAGGGAAGTACAACATGTCCGTGCTGGTGT
CTTTGGGGATAGGTTCGGTGGTGTACCTCTCCATCAAAACCCTCCGCGAC
CGCCTCACCCGGGCCGCCACGATTTATGCAGATCGGAACGCGCAAAGGAA
ACGGGTGATTGGCGACGAGGAAAGCGCGGAATGGATCAATACGGTCTTAT
GGCGATTTTGGCAGTTTTATGAGCCGGTGCTGTGTCAGAACCTTCGAGAA
GCAATCCAGCCGGCCTTGGATGCCAACACACCCGCGGGACTCAAACGACT
GGAGCTGGGGAGGTTAACGCTGGGGAAGACCCCTCCATTCATCAGCTCCG
CCCGGCTGCTCTTGCGAGATAACCACCATAACGAAATAAGCGAGAGTCGT
ATTGTCCTTAACTTGGGCCTTGGCTTCCATGCACCAGACCTGGAGGTGGT
GGTGGCCGCAAAGACCGTTGCCGCCAGCCTCCCCTTGGCCGTTAAAAACG
TTTGGTTCGAAGGTATGCTCCGCGTTGAGATCGAGCTCGTCCCGGACTTC
CCCCATGCCAAAACCGTCCTCGTCACCTTCCTCGACAAGCCCATCATCGA
TTTCTCCGTCATCCCTCTCAAGAGCGTTAATATCTTCGATTTGCCTGGCC
TGTCGCAGTTTATCAGCAACCTCATCATCAACGGCATATCCGAGAACCTG
GTGAATCCCGAGAAGCTCGTCATCGATTTGATTCCCGCAGAATGTGGACC
CGTGGAGGCGGCCAAGGGTGTGCTCTTCGTCTCGGTCGACAAGGCGATGT
ACAAGGAGACGAACGCCTTGGACGTGATGAGCGTGGGTAGCTCGGAGGTC
TATGCTGAGATCAAGGTGGGCAAGGACGTGGTGAGGACACAAGCCGTCTC
TAACGGCAAGGGCGAAGTTCTCTACGCCTTTGGGGGCGAAACGTTGGCCG
TGCTAGTCAAGGGAAATCTGGCTGCAGAGAAGGTGACGATTTATCTGCGT
CAGCGCCGTATGAGTGGACACCGGCTTCTGGGGAAGGTCTACGTCCCTGT
CGCCGACATAGTCAATTCGCCCAACAGCACCATCACTGAAACCCTCGACC
TCGAGGCTGGAAACGGTAGTGTAACGGCCACCTTTGCCTTCAAGGCCCTG
GCCAAGGTTAACGTCGAGGAAGGGGCCGGTGGCGAGGAGGACGCCTCTGT
CAGCACCACAGCCGAGAAGGTTAGCGAGGTTGGCGATGATTCTACCAAGG
CCGTTTCGGTCGTTGCTCCGGCCATGAAATCCGTTGGGAGCACGGGGTCC
TTGCTCGTCCGCCTTCACCAGGGGCAGGACCTGGCGCCGAAGGATTCTAA
CGGTTTCTCCGATCCGTTTGCCTCCCTTTTCTACACCAATAAGTTGGTGG
GTCAGACGCCTGTTTTCCCCAAAACACTCTCTCCCAAGTTTGAGTGGAAC
AAGGAGTACGTGGTGCAAGACATTGATCGCGTCCGCTTCACCCTCCGAGT
CTTCGACAAGGAGGAGATCGGATCGAGTGATGCCATGGGAGACCTCGATA
TCGACATGAAGGAAATCTTCCCCATCAAAAATCAAGGCACGGGCGAGCGT
GACTTCGTCGTCCTCAAGAAATGGATGCCACTGCGTGCTCCCGGGCCTGT
CATTGAGACGACCAGGACAGCTGCCGACTTGAAGCGTCGAGCCCCTGCTA
AGAAAGAGACTGGCTTCGGCCATGTCCTCCTGTCGTTCATTTTCCGTCCC
ACTGATATCCCTCCCGGCCTCAGCAATTTCCAGGCTGACCTGGGCAATCC
CGAGGACGACCTCTCTCTAACCCCCTACCAGGGCAGCGCACTGGATGCCA
TCGGCTCAGGCCTAGGAAAAGGTGTGGGGGCCATCGGGAGTAAGATCGGA
GCTGTGGGTGGTGGCGTCATTGGTGGCGTGGGCATGCTCGGTTCCGGCGT
CGCCGACGGCTTAACAGGCACGGCCAATCTTCTGGGAAACGGTCTAAAAG
GCGCCGTTAATTTAACGGGCAAGGGAGGCAATTCCATGGCCAAGCACATG
AGCTCCTTCTCCGCGGACGCTACCCCTCGTTCCAAGAAAGCCTTCTTCTC
CAGGAGGAAGAGCGGGGAGATGGACAGTAGCCGCTAAAGAGGGAGGGAGG
GAGAGAGGGAGGAAGAGAGGGAGGGAGGGTGTGCGTTGAGGCAGTCGAAC
GTATGGGGCGGATGGGAGGAGGGAGGGAGGGAAAGAGGGAGGGAGGGAAT
GAAGCAAAGAGGGGCGTGCGATATGCAGGAGCTGTAATGGCAGTAGCAGG
GTGAACAGAAAATGCGAAGGATATAGCAGCGTTGACATCGATGTAGAGGG
GGGGGAGGGGGGAAACGATGAAAGAGGAGACAGAAACGAAGACGTAGAGG
CGGGAAAGAAGGGGAAAGAAGGGAGCTGAAGGAGGAGGAGGAGAGATAAC
GATGAAGTGGCAGCATATACAGCCGCATTCGCAGCAGCAACAGCAGCAGC
AGCAGCAGCGGTAGCGGTAGCAGCATCAAGGGACATTAAAAAGTGAATAT
TTTTGTTTTTGTTTTATGGGAAATCTTCGACGGGGGCTAAAGACGTTCAT
CACGGGTACGCGAGTCGCAGCAGCAGCAGTAGCAAGTGAGGAGAAGCAGC
AGCAAGCAGACGAAATACAGCAGCGTCTTTTACTCATCAAATTGCAAGCA
ATAAAATAAGAGGGAACACAGGGGTAATCAATTTTATATAGGAAGGCTTT
GAGAGCGAATGATCAAAGACCGCGACACGAAGAAGAGAGGCAGATGCTGG
GGAGATATGAAAGTAAAGACGACACATCGCGTCATGCAGTACAGCAGCAA
TAACAGCTCCCTGTGGCAGCAACCGCCACCACAGCGGACTCACGTCGTCC
GGTGGCTCTCGTCGTATTCTCCTACTTGTTGCCTTTTCCTTCGCTAGTCA
TCCGTTCGTCAAGCCCTCTCATTCTCCCTCCCTTCCTCCCTCCCTCCCTC
CCTTCCTCCCTTCCTCTCTCCCGCCCTCCCTCCAAACTTCATGTCAATTA
ATTCCCTCCCCTTCACCCAAACACACGCACAAAACCAAAACAAAAGAAAC
AGACGCACAACGGTCAGACCGACAACCACCGTCCATCCTTCCCACCCTCC
TTCCCTCCCTCCCTCCCTCCCTCCC

protein sequence of NO11G00340.1

>NO11G00340.1-protein ID=NO11G00340.1-protein|Name=NO11G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MLVPGILVVAASVLSWTAGKYNMSVLVSLGIGSVVYLSIKTLRDRLTRAA
TIYADRNAQRKRVIGDEESAEWINTVLWRFWQFYEPVLCQNLREAIQPAL
DANTPAGLKRLELGRLTLGKTPPFISSARLLLRDNHHNEISESRIVLNLG
LGFHAPDLEVVVAAKTVAASLPLAVKNVWFEGMLRVEIELVPDFPHAKTV
LVTFLDKPIIDFSVIPLKSVNIFDLPGLSQFISNLIINGISENLVNPEKL
VIDLIPAECGPVEAAKGVLFVSVDKAMYKETNALDVMSVGSSEVYAEIKV
GKDVVRTQAVSNGKGEVLYAFGGETLAVLVKGNLAAEKVTIYLRQRRMSG
HRLLGKVYVPVADIVNSPNSTITETLDLEAGNGSVTATFAFKALAKVNVE
EGAGGEEDASVSTTAEKVSEVGDDSTKAVSVVAPAMKSVGSTGSLLVRLH
QGQDLAPKDSNGFSDPFASLFYTNKLVGQTPVFPKTLSPKFEWNKEYVVQ
DIDRVRFTLRVFDKEEIGSSDAMGDLDIDMKEIFPIKNQGTGERDFVVLK
KWMPLRAPGPVIETTRTAADLKRRAPAKKETGFGHVLLSFIFRPTDIPPG
LSNFQADLGNPEDDLSLTPYQGSALDAIGSGLGKGVGAIGSKIGAVGGGV
IGGVGMLGSGVADGLTGTANLLGNGLKGAVNLTGKGGNSMAKHMSSFSAD
ATPRSKKAFFSRRKSGEMDSSR*

mRNA from alignment at chr11:145965..152926-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00340.1 ID=NO11G00340.1|Name=NO11G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=6962bp|location=Sequence derived from alignment at chr11:145965..152926- (Nannochloropsis oceanica)
TTTGTTCCTTCATGGACACCCAATCAAAATTAAGTGCGGCCCTGAGTCCT
TGTAAACTATCGATACATAAACATAAACACACGGCGTTAATCCGTGTGTA
TGCATCTTATCCCCTTCCCCATCCCCAATGGACTGCTGTTTGTTTCGTCC
TCTTTTCCTTCTTGCCCTCGACAGCGATAAAAGCTCAAGGCTCAAGCTGA
TATTTTCCTCCGAGCGGGCCGCGGACTGTATTCAGCCCTCTGTGTCCCAT
CCTCCTACCTCTCCCAAGGATTTTTCCCGATCCATTAAGCCTGCCTTAAC
AATCCTTCCCTCCAGTTCATTTGCTGAACCTGTCTGGCAGGGTTTTGGGC
TTCTAAGAGGGGTGCACATAATCCTTCCGTTGCTGCCTGCAGCGACGAGG
AAGCAGAACAAACAAGAAGATGATATGATATAGCGAATCCTTAATTCGCA
AGCCTTATCGACAACCAATACAGTCGTTCTCATGCCCCGTCGCCCCCAAT
ACCTAAACAGCAGGTTAAAGCAGCCAACAAGCCGCTTCACGCAGGGTTTT
TCGCCTGTCTTAGCCCCCTCAAACTCCAATCGACCTCCTCATCCCTCCAC
TTTCCCCTGTTACCATGGCTACTGGCACTGCCCCCTCCAAGCTGGATGAG
AATGCGCGCAGCAATGATGCCGCAACCAAAAGTACGTACGAAAAGTGTGT
GGGAGGGGTGCGCCTGTTTGGTTCGGCGGGTAGAGGGCAGGGAAAGAAAT
GCGTGGCCTTTTCCCCCTTTGGTAGGGCATGACCCCCTGCGACACTTTCC
TTCTTGTTACTGCTCGGCATCTTTCTTTTCCGCTTTCAGCTCTTGTTTTT
CGTAAGTGAAGTTTGTTCTCTCATGTGTCTGTGGTTGTTAAATAGTCATT
TGCTTCGTGGTGGAAGGTCTTCCCCTCTCCTCCTCCTCATATTCACCCTT
TCTCCCTCTCTCCCTCCCTCCTCTAGATCTTACTGACGCCGGCGCCGCCG
CCGAGAACGCCGTGGCTTCTGCCTCTGCTGCCGCTTCCAATGAGATGACC
CCTCTCGTCACTCCCACCCCCCACCTGCTGCGCCAGCCCCAGACAAAAAG
TCCGCTGCCAAGCCCGCGCCTGCGTTCAAGAGCCCCCTTGCCGTGTCAGA
ACCGACGAAGGAAATGCTTGTCCCGGGTATCTTAGTCGTGGCGGCCTCGG
TCCTCTCCTGGACGGCAGGGAAGTACAACATGTCCGTGCTGGTGTCTTTG
GGGATAGGTTCGGTGGTGTACCTCTCCATCAAAACCCTCCGCGACCGCCT
CACCCGGGCCGCCACGATTTATGCAGATCGGAACGCGCAAAGGAAACGGG
TGATTGGCGACGAGGAAAGCGCGGAATGGATCAATACGGTCTTATGGCGA
TTTTGGCAGTTTTATGAGCCGGTGCTGTGTCAGAACCTTCGAGAAGCAAT
CCAGCCGGCCTTGGATGCCAACACACCCGCGGGACTCAAACGACTGGAGC
TGGGGAGGTTAACGCTGGGGAAGACCCCTCCATTCATCAGCTCCGCCCGG
CTGCTCTTGCGAGATAACCACCATAACGAAATAAGCGAGAGTCGTATTGT
CCTTAACTTGGGCCTTGGCTTCCATGCACCAGACCTGGAGGTGGTGGTGG
CCGCAAAGGTACGTCGTTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCTCT
CCCTCCCTCTCCCCCCCCTTCCCACGTTCCACATCGCAAGGCCTCATTTT
CGATCTCATTCTCTTCCCCTCCGTCAGACCGTTGCCGCCAGCCTCCCCTT
GGCCGTTAAAAACGTTTGGTTCGAAGGTATGCTCCGCGTTGAGATCGAGC
TCGTCCCGGACTTCCCCCATGCCAAAACCGTCCTCGTCACCTTCCTCGAC
AAGCCCATCATCGATTTCTCCGTCATCCCTCTCAAGAGCGTTAATATCTT
CGATTTGCCTGGCCTGTCGCAGTTTATCAGCAACCTCATCATCAACGGCA
TATGTACGTACCTTCCCACCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCAAA
ATTCCGTTTCTTGGGTTCCTTCGTCATCTCCATGCTCTCTTTGCACCCTC
TTTTGTCATTCCTTTGTATCGTACTCCTCAGTCTCTTCCAAACAATATTC
CTACCACCCACTCTCCCTTCCTCCCTCCCTCCCTCCCCCCTCCCTCCCCC
CCTCCCTCCCAGCCGAGAACCTGGTGAATCCCGAGAAGCTCGTCATCGAT
TTGATTCCCGCAGAATGTGGACCCGTGGAGGCGGCCAAGGGTGTGCTCTT
CGTCTCGGTCGACAAGGCGATGTACAAGGGTAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGCAAGTGTTCAA
GGTTTTGAGACACACACATATAGATACATACACACACATACACACGCATA
AACACAAACTCGTACATTTATATATTCTTTATGTGTAGATATATCGCATC
TGATATGTATATATTCTCTCTATATAGATACATAGAATCTCTCCAATCAT
TCTTACCTACCGTGTATTAAGTACATTTACTATAAACTCTCTCCAATCCT
TCTCACTTATCTTGTACTAATTAAATACTAATATATTATATTGCATTATA
TTATATTCTATTCACTATCAACTTCTCCTCGCAGAGACGAACGCCTTGGA
CGTGATGAGCGTGGGTAGCTCGGAGGTCTATGCTGAGATCAAGGTAAGCA
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCGGGGGG
AAAACGTGGTCAGGACTCACGCTATCGACAATGGCAAGAACGTTGACACT
CCCTGTCTCTCCCTCCCATCCTCCCTCCCATCCTCCCTCCCTCCCTCCCT
CCCTCCAGGTGGGCAAGGACGTGGTGAGGACACAAGCCGTCTCTAACGGC
AAGGGCGAAGTTCTCTACGCCTTTGGGGGCGAAACGTTGGCCGTGCTAGT
CAAGGGAAATCTGGCTGCAGAGAAGGTGACGATTTATCTGCGTCAGCGCC
GTATGAGTGGACACCGGCTTCTGGGGAAGGTAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGCGGGAGGGGCAACCTATCTTTTAGAACATCTCT
GCCTTTTTTTTTTCCTCTCACACGCACTCCCCTCTCTCCCTTCCTTCCCT
CCTTTCCACCCTTCTTCCCTCAGGTCTACGTCCCTGTCGCCGACATAGTC
AATTCGCCCAACAGCACCATCACTGAAACCCTCGACCTCGAGGCTGGAAA
CGGTAGTGTAACGGCCACCTTTGCCTTCAAGGCCCTGGCCAAGGTACGCC
CTTCCTTCTCCTCTTCTTCTTCTCTTTCCACCACTTTCATTCAAATTCAC
TCAAATTCAAACATTTAAATTTAAACAGGTTAACGTCGAGGAAGGGGCCG
GTGGCGAGGAGGACGCCTCTGTCAGCACCACAGCCGAGAAGGTACGTTGA
TTACCCCTGTCGTTCCTCCCCTTCCTCCTTTCCTTCCTCCCTCCCTAACT
CCTCCTCTTCGATCTCAAGCTCTTTAACACTATTAGGCGTACCTACCACT
GAGCCCCTCTCTTCGTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCGCC
CTCCCATCTCAGGTTAGCGAGGTTGGCGATGATTCTACCAAGGCCGTTTC
GGTCGTTGCTCCGGCCATGAAATCCGTTGGGAGCACGGGGTCCTTGCTCG
TCCGCCTTCACCAGGTGCTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGAGAGGGGGATGCCTTCAACGGAACTTCGCCGATG
TGGATCTGACACTTGTCCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTCC
CTTCCTCCCTCCCTCCCTCCCTCCCTTAGGGGCAGGACCTGGCGCCGAAG
GATTCTAACGGTTTCTCCGATCCGTTTGCCTCCCTTTTCTACACCAATAA
GTTGGTGGGTCAGACGCCTGTTTTCCCCAAAACACTCTCTCCCAAGTTTG
AGTGGAACAAGGTACGCCCTTCCTCCCTCCCTCCCTCACTCCCTCTTTCC
GTTTCGATTTTCCATGTCCTACTCGCCGTGTCCATCAATTCCCATCCTCC
CTCCCTCATTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCCTCCT
TTCTAGGAGTACGTGGTGCAAGACATTGATCGCGTCCGCTTCACCCTCCG
AGTCTTCGACAAGGAGGAGATCGGATCGAGTGATGCCATGGGAGACCTCG
ATATCGACATGAAGGAAATCTTCCCCATCAAAAATCAAGGTGCGAAGTCC
CTCCCTCCTTCCCCCCGACCTCGATCCGTATCTCTTCTCCCCGACTTTCC
ACCCACCCTCCCTCCCTCCCTCCTTAGGCACGGGCGAGCGTGACTTCGTC
GTCCTCAAGAAATGGATGCCACTGCGTGCTCCCGGGCCTGTCATTGAGAC
GACCAGGACAGCTGCCGACTTGAAGCGTCGAGCCCCTGCTAAGAAAGAGA
CTGGTACTTACCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCCATCCCGCCTCTCTGTTCTTG
CCTCCTTCCCTTCCTGCTTCCTCCCATTCACCAGCCTCTCGGTCCATCCT
CCCTCCGTCATGCTCTTCTATGTCAACTTCACCGCTCTTCCCCCCTCCCT
CTTTCCCTTCCTCCCTCCAGGCTTCGGCCATGTCCTCCTGTCGTTCATTT
TCCGTCCCACTGATATCCCTCCCGGCCTCAGCAATTTCCAGGCTGACCTG
GGCAATCCCGAGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCA
GGTGTATTCCCTCCCTCCTTTCGTCCCTCCCTCCCTTGCACCATTCCCGG
CACTCACATTTCTCCCTCCTTCCTCCCCCCCTTTCCTTCATCAGGACGAC
CTCTCTCTAACCCCCTACCAGGGCAGCGCACTGGATGCCATCGGCTCAGG
CCTAGGAAAAGGTGTGGGGGCCATCGGGAGTAAGATCGGAGCTGTGGGTG
GTGGCGTCATTGGTGGTAGGTCCCTCCTTCCCTTCCTCCCTCCAAATGCT
TTTATTAAGACACTTTTCATCCCTGCCTTCATTTTAATGTTTCCATCTCA
CTCCCTCGCACCAAAATCATACGACTTTGACACACTCTCTTTCCCCCCTT
ATTCTCTCTCTGTCTTGTGGGCCAAGCCGCCGCTACTGTGACATTTTTTG
GCCTTTCCCCTCATCTCATTTCTTTCCTTTTTCCGGCGATAAATCGCGCT
ATTTAGCCCCCTCTCTACCTCTCTCATTTGTCCCTTTCCTTCGCGCCATT
TCCCCTGTCACGACAGGCGTGGGCATGCTCGGTTCCGGCGTCGCCGACGG
CTTAACAGGCACGGCCAATCTTCTGGTGAGCGACTCTCTCGTTTTCATTC
TCCCTCCCTCCCTCCCTCCCCCGCTCCCTTTCCCACTCCCTCCCTCCCTC
CCTCCCCTCCCCTCCCTTCTTCCTTTTCTTCTACGTGCAAAACACGTAGA
TGATAGGGATCGTATGCATGCCAGAAATTTACACCCTCCCTACCTTCCTT
TCTTCCTCCATTCCCTCACAGGGAAACGGTCTAAAAGGCGCCGTTAATTT
AACGGGCAAGGGAGGCAATTCCATGGCCAAGCACATGAGCTCCTTCTCCG
CGGACGCTACCCCTCGTTCCAAGAAAGCCTTCTTCTCCAGGAGGAAGAGC
GGGGAGATGGACAGTAGCCGCTAAAGAGGGAGGGAGGGAGAGAGGGAGGA
AGAGAGGGAGGGAGGGTGTGCGTTGAGGCAGTCGAACGTATGGGGCGGAT
GGGAGGAGGGAGGGAGGGAAAGAGGGAGGGAGGGAATGAAGCAAAGAGGG
GCGTGCGATATGCAGGAGCTGTAATGGCAGTAGCAGGGTGAACAGAAAAT
GCGAAGGATATAGCAGCGTTGACATCGATGTAGAGGGGGGGGAGGGGGGA
AACGATGAAAGAGGAGACAGAAACGAAGACGTAGAGGCGGGAAAGAAGGG
GAAAGAAGGGAGCTGAAGGAGGAGGAGGAGAGATAACGATGAAGTGGCAG
CATATACAGCCGCATTCGCAGCAGCAACAGCAGCAGCAGCAGCAGCGGTA
GCGGTAGCAGCATCAAGGGACATTAAAAAGTGAATATTTTTGTTTTTGTT
TTATGGGAAATCTTCGACGGGGGCTAAAGACGTTCATCACGGGTACGCGA
GTCGCAGCAGCAGCAGTAGCAAGTGAGGAGAAGCAGCAGCAAGCAGACGA
AATACAGCAGCGTCTTTTACTCATCAAATTGCAAGCAATAAAATAAGAGG
GAACACAGGGGTAATCAATTTTATATAGGAAGGCTTTGAGAGCGAATGAT
CAAAGACCGCGACACGAAGAAGAGAGGCAGATGCTGGGGAGATATGAAAG
TAAAGACGACACATCGCGTCATGCAGTACAGCAGCAATAACAGCTCCCTG
TGGCAGCAACCGCCACCACAGCGGACTCACGTCGTCCGGTGGCTCTCGTC
GTATTCTCCTACTTGTTGCCTTTTCCTTCGCTAGTCATCCGTTCGTCAAG
CCCTCTCATTCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTTC
CTCTCTCCCGCCCTCCCTCCAAACTTCATGTCAATTAATTCCCTCCCCTT
CACCCAAACACACGCACAAAACCAAAACAAAAGAAACAGACGCACAACGG
TCAGACCGACAACCACCGTCCATCCTTCCCACCCTCCTTCCCTCCCTCCC
TCCCTCCCTCCC

Coding sequence (CDS) from alignment at chr11:145965..152926-

>NO11G00340.1 ID=NO11G00340.1|Name=NO11G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at chr11:145965..152926- (Nannochloropsis oceanica)
ATGCTTGTCCCGGGTATCTTAGTCGTGGCGGCCTCGGTCCTCTCCTGGAC
GGCAGGGAAGTACAACATGTCCGTGCTGGTGTCTTTGGGGATAGGTTCGG
TGGTGTACCTCTCCATCAAAACCCTCCGCGACCGCCTCACCCGGGCCGCC
ACGATTTATGCAGATCGGAACGCGCAAAGGAAACGGGTGATTGGCGACGA
GGAAAGCGCGGAATGGATCAATACGGTCTTATGGCGATTTTGGCAGTTTT
ATGAGCCGGTGCTGTGTCAGAACCTTCGAGAAGCAATCCAGCCGGCCTTG
GATGCCAACACACCCGCGGGACTCAAACGACTGGAGCTGGGGAGGTTAAC
GCTGGGGAAGACCCCTCCATTCATCAGCTCCGCCCGGCTGCTCTTGCGAG
ATAACCACCATAACGAAATAAGCGAGAGTCGTATTGTCCTTAACTTGGGC
CTTGGCTTCCATGCACCAGACCTGGAGGTGGTGGTGGCCGCAAAGACCGT
TGCCGCCAGCCTCCCCTTGGCCGTTAAAAACGTTTGGTTCGAAGGTATGC
TCCGCGTTGAGATCGAGCTCGTCCCGGACTTCCCCCATGCCAAAACCGTC
CTCGTCACCTTCCTCGACAAGCCCATCATCGATTTCTCCGTCATCCCTCT
CAAGAGCGTTAATATCTTCGATTTGCCTGGCCTGTCGCAGTTTATCAGCA
ACCTCATCATCAACGGCATATCCGAGAACCTGGTGAATCCCGAGAAGCTC
GTCATCGATTTGATTCCCGCAGAATGTGGACCCGTGGAGGCGGCCAAGGG
TGTGCTCTTCGTCTCGGTCGACAAGGCGATGTACAAGGAGACGAACGCCT
TGGACGTGATGAGCGTGGGTAGCTCGGAGGTCTATGCTGAGATCAAGGTG
GGCAAGGACGTGGTGAGGACACAAGCCGTCTCTAACGGCAAGGGCGAAGT
TCTCTACGCCTTTGGGGGCGAAACGTTGGCCGTGCTAGTCAAGGGAAATC
TGGCTGCAGAGAAGGTGACGATTTATCTGCGTCAGCGCCGTATGAGTGGA
CACCGGCTTCTGGGGAAGGTCTACGTCCCTGTCGCCGACATAGTCAATTC
GCCCAACAGCACCATCACTGAAACCCTCGACCTCGAGGCTGGAAACGGTA
GTGTAACGGCCACCTTTGCCTTCAAGGCCCTGGCCAAGGTTAACGTCGAG
GAAGGGGCCGGTGGCGAGGAGGACGCCTCTGTCAGCACCACAGCCGAGAA
GGTTAGCGAGGTTGGCGATGATTCTACCAAGGCCGTTTCGGTCGTTGCTC
CGGCCATGAAATCCGTTGGGAGCACGGGGTCCTTGCTCGTCCGCCTTCAC
CAGGGGCAGGACCTGGCGCCGAAGGATTCTAACGGTTTCTCCGATCCGTT
TGCCTCCCTTTTCTACACCAATAAGTTGGTGGGTCAGACGCCTGTTTTCC
CCAAAACACTCTCTCCCAAGTTTGAGTGGAACAAGGAGTACGTGGTGCAA
GACATTGATCGCGTCCGCTTCACCCTCCGAGTCTTCGACAAGGAGGAGAT
CGGATCGAGTGATGCCATGGGAGACCTCGATATCGACATGAAGGAAATCT
TCCCCATCAAAAATCAAGGCACGGGCGAGCGTGACTTCGTCGTCCTCAAG
AAATGGATGCCACTGCGTGCTCCCGGGCCTGTCATTGAGACGACCAGGAC
AGCTGCCGACTTGAAGCGTCGAGCCCCTGCTAAGAAAGAGACTGGCTTCG
GCCATGTCCTCCTGTCGTTCATTTTCCGTCCCACTGATATCCCTCCCGGC
CTCAGCAATTTCCAGGCTGACCTGGGCAATCCCGAGGACGACCTCTCTCT
AACCCCCTACCAGGGCAGCGCACTGGATGCCATCGGCTCAGGCCTAGGAA
AAGGTGTGGGGGCCATCGGGAGTAAGATCGGAGCTGTGGGTGGTGGCGTC
ATTGGTGGCGTGGGCATGCTCGGTTCCGGCGTCGCCGACGGCTTAACAGG
CACGGCCAATCTTCTGGGAAACGGTCTAAAAGGCGCCGTTAATTTAACGG
GCAAGGGAGGCAATTCCATGGCCAAGCACATGAGCTCCTTCTCCGCGGAC
GCTACCCCTCGTTCCAAGAAAGCCTTCTTCTCCAGGAGGAAGAGCGGGGA
GATGGACAGTAGCCGCTAA

Synonyms

Publications