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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:122844..125492 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00290.5 vs.
Match: EWM25194.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana]) HSP 1 Score: 360.5 bits (924), Expect = 4.300e-96 Identity = 174/213 (81.69%), Postives = 195/213 (91.55%), Query Frame = 0
Query: 1 MATAGLAYTKGRVVGKGTWGSVCLGTVSKTGRKVAIKEIHRSMERYEDGVNFSVLREIKVLMELKHTNIVELLDVRVTEDGLELVLDYCETNLKRVVEDRRLVKAIRYEDTKGFMQQLLRGLHFLHSNWILHRDLKPDNILLTAKGVLKIADFGLARYFGNPNETLSPGFQVITRQYRPPELLLGSRLYGPAVDIWSVGCIMVRSLKIRVIYF 214
MA + L+Y+KG VVGKGTWGSV LGT+ K+GRKVAIKEIHRSMERYEDGVNFSVLREIK+LMELKH ++VEL DVRVT DGLELVL+YCET+LKRVVEDRR VKAIRYED KG MQQLLRG+HFLHSNWILHRDLKPDNIL+TA+G+LKIADFGLARYFGNPNETLSPG QVITRQYRPPELLLGSR+YGP VD+WS+GCIM +++R + F
Sbjct: 1 MAGSALSYSKGAVVGKGTWGSVRLGTIEKSGRKVAIKEIHRSMERYEDGVNFSVLREIKILMELKHRHVVELFDVRVTADGLELVLEYCETDLKRVVEDRRRVKAIRYEDAKGIMQQLLRGMHFLHSNWILHRDLKPDNILITAQGILKIADFGLARYFGNPNETLSPGMQVITRQYRPPELLLGSRVYGPPVDMWSIGCIM-GEIRLRELLF 212
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00290.5 ID=NO11G00290.5|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp CAGGTCGGCGCTCCTGAGGACGCAATTTTGTGTGGCAAGGGCGTTGGCCC AGCCCTACGAGAGAGGAGGTCGACCCTTGAGACCGACTCGAGACCCCTCC TCCATATCTCCCCGTCTGTAATCAAGGCAGCGATGGCAACCGCCGGCCTT GCATACACCAAAGGCCGGGTGGTGGGCAAGGGTACTTGGGGCAGTGTCTG CTTGGGCACGGTCAGCAAGACGGGGCGGAAGGTGGCCATCAAAGAGATCC ACCGTTCCATGGAGAGATACGAGGACGGAGTCAACTTCTCGGTCCTGCGC GAGATCAAGGTGTTGATGGAACTCAAGCACACCAACATCGTGGAGTTACT CGATGTCCGCGTCACGGAGGACGGGCTCGAACTTGTCTTGGATTACTGCG AGACAAACCTGAAGCGGGTTGTAGAGGACCGCCGCTTGGTCAAGGCAATT CGGTATGAGGATACCAAAGGCTTCATGCAGCAGCTATTGCGGGGCCTCCA CTTCCTCCACTCCAACTGGATCTTGCATCGAGATCTCAAACCAGATAACA TCCTGCTCACAGCCAAGGGTGTTCTTAAGATCGCGGATTTCGGCCTCGCG CGTTATTTTGGGAACCCCAACGAGACCCTCTCCCCTGGCTTTCAAGTCAT TACTCGGCAGTATCGACCGCCCGAGCTTCTGTTAGGCAGTCGATTGTATG GCCCCGCAGTGGATATATGGTCGGTGGGTTGTATCATGGTACGTTCTCTC AAGATAAGAGTCATATATTTTGTAATATTGTTTTGCGAAGACGCCTGTGG CCTGATGCCGGCAGCTACCCCGTCACGCGGGGCGGGCTTATTTTGGTGCA CGCACTTTGTCAATAAATTTATAATCACGGTGGTAACATTTTTTAGTTGT CAGTATGGCGAATGTAGGTACTAATAAAATTGGTGCCTCAAATAAGAAAG TGGCCGCGTGATTAGATCTTATTTTAGGTCATGTTGGCTATGGTTGCAGG GTGATGTGTGTGTCGGAAAATTTATAAATATGTGGCTATCCTTTAGACTT CGATCGATCCTTCATGTGCATCACTCATTTGATAAGCCCAAGCAATTCGA CTGACATGTCACAGGCTTTAGTTTTCTCCGCTATGTTCCTTTGTTTCGGC ACTCACGCACTTGCACACGCCCATATACACAGGGAGAGGTCCGATTGCGC GAGTTGCTGTTCCGCGGAGATGTGGACACGGACATTGCGCAACTGGCCAA GATCTTTCAGATTCTAGGTACGCGAAAAGACGGGAGGGAGTGGCCGGGGA GAAAGGAAACGAGCGAGCGATGTGCAGTAAGTGTGTTGTTGATGATTACA AACATTAAACGAATGAACAATCCTAGTCTGACTTCTCTTTATGGAGAGAA ACTTTATGCGGTTATGAGAATGAAACAGCACGTACACACAAACGCTTCGT GAAGCTGAGGAGGCGTAGGAGGAGGGGCACAGGGGTGCAAGGTCTGCACC TATGGAGTCAGATCGTGTCCCCCCAGCTGTCTCTCGCTTTCTCACCACCT ACAAATCATGAAAACAACAGGCACGCCCACCGAAGCGAATTGGCCAGGCT ACACGGCATTACCGGATTATCCTCGCTATAACATCACCCCGCAGCCTCCG CCGGAATTGGCGCGCCTACTTCCGTCTTGCCGTCCTGACGAGCTCGATTT GCTTCAAAAGCTCGTGTCGCTCGATCCCAACGCGCGCTTGACGGCCCAAG AAGCCTTGGATCACGGCTATTTTCGCGCGGAACCCCGGGCGACGCCACCG TCACAGTTACCCTTGCCTTTGGAAGGGAAAGGAGGCGTCAAGGAGGAGGA GGACCATTAGGGCGTAGGGGGAAACGGGCCCTCCGTTTAATTGGTTAAAA ATCGAGAGCAAGATGTACATAAAGAAATAAATGTGCATACAAGTGCTTTT TAA back to topprotein sequence of NO11G00290.5 >NO11G00290.5-protein ID=NO11G00290.5-protein|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp MATAGLAYTKGRVVGKGTWGSVCLGTVSKTGRKVAIKEIHRSMERYEDGV NFSVLREIKVLMELKHTNIVELLDVRVTEDGLELVLDYCETNLKRVVEDR RLVKAIRYEDTKGFMQQLLRGLHFLHSNWILHRDLKPDNILLTAKGVLKI ADFGLARYFGNPNETLSPGFQVITRQYRPPELLLGSRLYGPAVDIWSVGC IMVRSLKIRVIYFVILFCEDACGLMPAATPSRGAGLFWCTHFVNKFIITV VTFFSCQYGECRY* back to topmRNA from alignment at chr11:122844..125492- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00290.5 ID=NO11G00290.5|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr11:122844..125492- (Nannochloropsis oceanica) CAGGTCGGCGCTCCTGAGGACGCAATTTTGTGTGGCAAGGGCGTTGGCCC
AGCCCTACGAGAGAGGAGGTCGACCCTTGAGACCGACTCGAGACCCCTCC
TCCATATCTCCCCGTCTGTAATCAAGGCAGCGATGGCAACCGCCGGCCTT
GCATACACCAAAGGCCGGGTGGTGGGCAAGGGTACTTGGGGCAGTGTCTG
CTTGGGCACGGTCAGCAAGACGGGGCGGAAGGTGGCCATCAAAGAGATCC
ACCGTTCCATGGAGAGATACGAGGTGAGCTAGGTTCGAAACGAGATGGGG
AGAAAGACAGGGGAAATTTACAGCTGATCTCCACTAGGACCATGTATCTG
GCTTATCTGTGGATTGATTGGACTCGGTGAGGACGAAGAGGATCTCGGTG
AGGGTGAGCATGCCGCGCTTGATAGACAACTTCGCCCTCATCTTCATTGC
CTTCATGTCCCCGTGACGCTTCCATACCTCTTCGCCAGACATCACTACAA
TTTCCGATCGACACATCTTCCATTTTCAGGTTAACCACTTATCATTCACT
ACGTTAACACGTAAAATCACAGGACGGAGTCAACTTCTCGGTCCTGCGCG
AGATCAAGGTGTTGATGGAACTCAAGCACACCAACATCGTGGAGTTACTC
GATGTCCGCGTCACGGAGGACGGGCTCGAACTTGTCTTGGATTACTGCGA
GACAAACCTGAAGCGGGTACGTGGTTTTGCGTTCGGTTTGTCTTTGGGCG
CCCCAGATTTAAGCTTTTACAAATATAGGTGCTAGTGGCCTCTCTATTCT
CCTTCCGTCCTCCCCTTCAAGGTATCTCTCGGATTTTTACTGATGATTCT
TCTGTATTCAAACCTTTCCATTCATCAGGTTGTAGAGGACCGCCGCTTGG
TCAAGGCAATTCGGTATGAGGATACCAAAGGCTTCATGCAGCAGCTATTG
CGGGGCCTCCACTTCCTCCACTCCAACTGGATCTTGCATCGGTATGTCCT
TCGGGCGGGATTTTGGTTTTGTCCTCTGAAACGATGATGTGTGTAGCCAT
ATACCCACGTGACTGTGTGCGCTGGCACGTGTGCCTGTGTAAGGGAGCTG
GGAGGAGTTATCTTCAAAAGAGACAGTCTTGTCTTGTTGCTTGTAGATGC
AAAACTGATTATCTAACCCCGTCTGTCAGCCGCCCTCACTCACATCCCCT
TCACCTTTCCTATATCCAATCATCAGAGATCTCAAACCAGATAACATCCT
GCTCACAGCCAAGGGTGTTCTTAAGATCGCGGATTTCGGCCTCGCGCGTT
ATTTTGGGAACCCCAACGAGACCCTCTCCCCTGGCTTTCAAGTCATTACT
CGGCAGTATCGACCGCCCGAGCTTCTGTTAGGCAGTCGATTGTATGGCCC
CGCAGTGGATATATGGTCGGTGGGTTGTATCATGGTACGTTCTCTCAAGA
TAAGAGTCATATATTTTGTAATATTGTTTTGCGAAGACGCCTGTGGCCTG
ATGCCGGCAGCTACCCCGTCACGCGGGGCGGGCTTATTTTGGTGCACGCA
CTTTGTCAATAAATTTATAATCACGGTGGTAACATTTTTTAGTTGTCAGT
ATGGCGAATGTAGGTACTAATAAAATTGGTGCCTCAAATAAGAAAGTGGC
CGCGTGATTAGATCTTATTTTAGGTCATGTTGGCTATGGTTGCAGGGTGA
TGTGTGTGTCGGAAAATTTATAAATATGTGGCTATCCTTTAGACTTCGAT
CGATCCTTCATGTGCATCACTCATTTGATAAGCCCAAGCAATTCGACTGA
CATGTCACAGGCTTTAGTTTTCTCCGCTATGTTCCTTTGTTTCGGCACTC
ACGCACTTGCACACGCCCATATACACAGGGAGAGGTCCGATTGCGCGAGT
TGCTGTTCCGCGGAGATGTGGACACGGACATTGCGCAACTGGCCAAGATC
TTTCAGATTCTAGGTACGCGAAAAGACGGGAGGGAGTGGCCGGGGAGAAA
GGAAACGAGCGAGCGATGTGCAGTAAGTGTGTTGTTGATGATTACAAACA
TTAAACGAATGAACAATCCTAGTCTGACTTCTCTTTATGGAGAGAAACTT
TATGCGGTTATGAGAATGAAACAGCACGTACACACAAACGCTTCGTGAAG
CTGAGGAGGCGTAGGAGGAGGGGCACAGGGGTGCAAGGTCTGCACCTATG
GAGTCAGATCGTGTCCCCCCAGCTGTCTCTCGCTTTCTCACCACCTACAA
ATCATGAAAACAACAGGCACGCCCACCGAAGCGAATTGGCCAGGCTACAC
GGCATTACCGGATTATCCTCGCTATAACATCACCCCGCAGCCTCCGCCGG
AATTGGCGCGCCTACTTCCGTCTTGCCGTCCTGACGAGCTCGATTTGCTT
CAAAAGCTCGTGTCGCTCGATCCCAACGCGCGCTTGACGGCCCAAGAAGC
CTTGGATCACGGCTATTTTCGCGCGGAACCCCGGGCGACGCCACCGTCAC
AGTTACCCTTGCCTTTGGAAGGGAAAGGAGGCGTCAAGGAGGAGGAGGAC
CATTAGGGCGTAGGGGGAAACGGGCCCTCCGTTTAATTGGTTAAAAATCG
AGAGCAAGATGTACATAAAGAAATAAATGTGCATACAAGTGCTTTTTAA back to topCoding sequence (CDS) from alignment at chr11:122844..125492- >NO11G00290.5 ID=NO11G00290.5|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr11:122844..125492- (Nannochloropsis oceanica) ATGGCAACCGCCGGCCTTGCATACACCAAAGGCCGGGTGGTGGGCAAGGG TACTTGGGGCAGTGTCTGCTTGGGCACGGTCAGCAAGACGGGGCGGAAGG TGGCCATCAAAGAGATCCACCGTTCCATGGAGAGATACGAGGACGGAGTC AACTTCTCGGTCCTGCGCGAGATCAAGGTGTTGATGGAACTCAAGCACAC CAACATCGTGGAGTTACTCGATGTCCGCGTCACGGAGGACGGGCTCGAAC TTGTCTTGGATTACTGCGAGACAAACCTGAAGCGGGTTGTAGAGGACCGC CGCTTGGTCAAGGCAATTCGGTATGAGGATACCAAAGGCTTCATGCAGCA GCTATTGCGGGGCCTCCACTTCCTCCACTCCAACTGGATCTTGCATCGAG ATCTCAAACCAGATAACATCCTGCTCACAGCCAAGGGTGTTCTTAAGATC GCGGATTTCGGCCTCGCGCGTTATTTTGGGAACCCCAACGAGACCCTCTC CCCTGGCTTTCAAGTCATTACTCGGCAGTATCGACCGCCCGAGCTTCTGT TAGGCAGTCGATTGTATGGCCCCGCAGTGGATATATGGTCGGTGGGTTGT ATCATGGTACGTTCTCTCAAGATAAGAGTCATATATTTTGTAATATTGTT TTGCGAAGACGCCTGTGGCCTGATGCCGGCAGCTACCCCGTCACGCGGGG CGGGCTTATTTTGGTGCACGCACTTTGTCAATAAATTTATAATCACGGTG GTAACATTTTTTAGTTGTCAGTATGGCGAATGTAGGTACTAA back to top
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