NO11G00290.5, NO11G00290.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00290.5
Unique NameNO11G00290.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr11:122844..125492 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:122844..125492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00290.5 vs.
Match: EWM25194.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana])

HSP 1 Score: 360.5 bits (924), Expect = 4.300e-96
Identity = 174/213 (81.69%), Postives = 195/213 (91.55%), Query Frame = 0
Query:    1 MATAGLAYTKGRVVGKGTWGSVCLGTVSKTGRKVAIKEIHRSMERYEDGVNFSVLREIKVLMELKHTNIVELLDVRVTEDGLELVLDYCETNLKRVVEDRRLVKAIRYEDTKGFMQQLLRGLHFLHSNWILHRDLKPDNILLTAKGVLKIADFGLARYFGNPNETLSPGFQVITRQYRPPELLLGSRLYGPAVDIWSVGCIMVRSLKIRVIYF 214
            MA + L+Y+KG VVGKGTWGSV LGT+ K+GRKVAIKEIHRSMERYEDGVNFSVLREIK+LMELKH ++VEL DVRVT DGLELVL+YCET+LKRVVEDRR VKAIRYED KG MQQLLRG+HFLHSNWILHRDLKPDNIL+TA+G+LKIADFGLARYFGNPNETLSPG QVITRQYRPPELLLGSR+YGP VD+WS+GCIM   +++R + F
Sbjct:    1 MAGSALSYSKGAVVGKGTWGSVRLGTIEKSGRKVAIKEIHRSMERYEDGVNFSVLREIKILMELKHRHVVELFDVRVTADGLELVLEYCETDLKRVVEDRRRVKAIRYEDAKGIMQQLLRGMHFLHSNWILHRDLKPDNILITAQGILKIADFGLARYFGNPNETLSPGMQVITRQYRPPELLLGSRVYGPPVDMWSIGCIM-GEIRLRELLF 212          
The following BLAST results are available for this feature:
BLAST of NO11G00290.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25194.14.300e-9681.69Protein kinase, ATP binding site [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00290NO11G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00290.5NO11G00290.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00290.5.cds1NO11G00290.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00290.5.cds2NO11G00290.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00290.5.cds3NO11G00290.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00290.5.cds4NO11G00290.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00290.5 ID=NO11G00290.5|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp
CAGGTCGGCGCTCCTGAGGACGCAATTTTGTGTGGCAAGGGCGTTGGCCC
AGCCCTACGAGAGAGGAGGTCGACCCTTGAGACCGACTCGAGACCCCTCC
TCCATATCTCCCCGTCTGTAATCAAGGCAGCGATGGCAACCGCCGGCCTT
GCATACACCAAAGGCCGGGTGGTGGGCAAGGGTACTTGGGGCAGTGTCTG
CTTGGGCACGGTCAGCAAGACGGGGCGGAAGGTGGCCATCAAAGAGATCC
ACCGTTCCATGGAGAGATACGAGGACGGAGTCAACTTCTCGGTCCTGCGC
GAGATCAAGGTGTTGATGGAACTCAAGCACACCAACATCGTGGAGTTACT
CGATGTCCGCGTCACGGAGGACGGGCTCGAACTTGTCTTGGATTACTGCG
AGACAAACCTGAAGCGGGTTGTAGAGGACCGCCGCTTGGTCAAGGCAATT
CGGTATGAGGATACCAAAGGCTTCATGCAGCAGCTATTGCGGGGCCTCCA
CTTCCTCCACTCCAACTGGATCTTGCATCGAGATCTCAAACCAGATAACA
TCCTGCTCACAGCCAAGGGTGTTCTTAAGATCGCGGATTTCGGCCTCGCG
CGTTATTTTGGGAACCCCAACGAGACCCTCTCCCCTGGCTTTCAAGTCAT
TACTCGGCAGTATCGACCGCCCGAGCTTCTGTTAGGCAGTCGATTGTATG
GCCCCGCAGTGGATATATGGTCGGTGGGTTGTATCATGGTACGTTCTCTC
AAGATAAGAGTCATATATTTTGTAATATTGTTTTGCGAAGACGCCTGTGG
CCTGATGCCGGCAGCTACCCCGTCACGCGGGGCGGGCTTATTTTGGTGCA
CGCACTTTGTCAATAAATTTATAATCACGGTGGTAACATTTTTTAGTTGT
CAGTATGGCGAATGTAGGTACTAATAAAATTGGTGCCTCAAATAAGAAAG
TGGCCGCGTGATTAGATCTTATTTTAGGTCATGTTGGCTATGGTTGCAGG
GTGATGTGTGTGTCGGAAAATTTATAAATATGTGGCTATCCTTTAGACTT
CGATCGATCCTTCATGTGCATCACTCATTTGATAAGCCCAAGCAATTCGA
CTGACATGTCACAGGCTTTAGTTTTCTCCGCTATGTTCCTTTGTTTCGGC
ACTCACGCACTTGCACACGCCCATATACACAGGGAGAGGTCCGATTGCGC
GAGTTGCTGTTCCGCGGAGATGTGGACACGGACATTGCGCAACTGGCCAA
GATCTTTCAGATTCTAGGTACGCGAAAAGACGGGAGGGAGTGGCCGGGGA
GAAAGGAAACGAGCGAGCGATGTGCAGTAAGTGTGTTGTTGATGATTACA
AACATTAAACGAATGAACAATCCTAGTCTGACTTCTCTTTATGGAGAGAA
ACTTTATGCGGTTATGAGAATGAAACAGCACGTACACACAAACGCTTCGT
GAAGCTGAGGAGGCGTAGGAGGAGGGGCACAGGGGTGCAAGGTCTGCACC
TATGGAGTCAGATCGTGTCCCCCCAGCTGTCTCTCGCTTTCTCACCACCT
ACAAATCATGAAAACAACAGGCACGCCCACCGAAGCGAATTGGCCAGGCT
ACACGGCATTACCGGATTATCCTCGCTATAACATCACCCCGCAGCCTCCG
CCGGAATTGGCGCGCCTACTTCCGTCTTGCCGTCCTGACGAGCTCGATTT
GCTTCAAAAGCTCGTGTCGCTCGATCCCAACGCGCGCTTGACGGCCCAAG
AAGCCTTGGATCACGGCTATTTTCGCGCGGAACCCCGGGCGACGCCACCG
TCACAGTTACCCTTGCCTTTGGAAGGGAAAGGAGGCGTCAAGGAGGAGGA
GGACCATTAGGGCGTAGGGGGAAACGGGCCCTCCGTTTAATTGGTTAAAA
ATCGAGAGCAAGATGTACATAAAGAAATAAATGTGCATACAAGTGCTTTT
TAA
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protein sequence of NO11G00290.5

>NO11G00290.5-protein ID=NO11G00290.5-protein|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MATAGLAYTKGRVVGKGTWGSVCLGTVSKTGRKVAIKEIHRSMERYEDGV
NFSVLREIKVLMELKHTNIVELLDVRVTEDGLELVLDYCETNLKRVVEDR
RLVKAIRYEDTKGFMQQLLRGLHFLHSNWILHRDLKPDNILLTAKGVLKI
ADFGLARYFGNPNETLSPGFQVITRQYRPPELLLGSRLYGPAVDIWSVGC
IMVRSLKIRVIYFVILFCEDACGLMPAATPSRGAGLFWCTHFVNKFIITV
VTFFSCQYGECRY*
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mRNA from alignment at chr11:122844..125492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00290.5 ID=NO11G00290.5|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr11:122844..125492- (Nannochloropsis oceanica)
CAGGTCGGCGCTCCTGAGGACGCAATTTTGTGTGGCAAGGGCGTTGGCCC AGCCCTACGAGAGAGGAGGTCGACCCTTGAGACCGACTCGAGACCCCTCC TCCATATCTCCCCGTCTGTAATCAAGGCAGCGATGGCAACCGCCGGCCTT GCATACACCAAAGGCCGGGTGGTGGGCAAGGGTACTTGGGGCAGTGTCTG CTTGGGCACGGTCAGCAAGACGGGGCGGAAGGTGGCCATCAAAGAGATCC ACCGTTCCATGGAGAGATACGAGGTGAGCTAGGTTCGAAACGAGATGGGG AGAAAGACAGGGGAAATTTACAGCTGATCTCCACTAGGACCATGTATCTG GCTTATCTGTGGATTGATTGGACTCGGTGAGGACGAAGAGGATCTCGGTG AGGGTGAGCATGCCGCGCTTGATAGACAACTTCGCCCTCATCTTCATTGC CTTCATGTCCCCGTGACGCTTCCATACCTCTTCGCCAGACATCACTACAA TTTCCGATCGACACATCTTCCATTTTCAGGTTAACCACTTATCATTCACT ACGTTAACACGTAAAATCACAGGACGGAGTCAACTTCTCGGTCCTGCGCG AGATCAAGGTGTTGATGGAACTCAAGCACACCAACATCGTGGAGTTACTC GATGTCCGCGTCACGGAGGACGGGCTCGAACTTGTCTTGGATTACTGCGA GACAAACCTGAAGCGGGTACGTGGTTTTGCGTTCGGTTTGTCTTTGGGCG CCCCAGATTTAAGCTTTTACAAATATAGGTGCTAGTGGCCTCTCTATTCT CCTTCCGTCCTCCCCTTCAAGGTATCTCTCGGATTTTTACTGATGATTCT TCTGTATTCAAACCTTTCCATTCATCAGGTTGTAGAGGACCGCCGCTTGG TCAAGGCAATTCGGTATGAGGATACCAAAGGCTTCATGCAGCAGCTATTG CGGGGCCTCCACTTCCTCCACTCCAACTGGATCTTGCATCGGTATGTCCT TCGGGCGGGATTTTGGTTTTGTCCTCTGAAACGATGATGTGTGTAGCCAT ATACCCACGTGACTGTGTGCGCTGGCACGTGTGCCTGTGTAAGGGAGCTG GGAGGAGTTATCTTCAAAAGAGACAGTCTTGTCTTGTTGCTTGTAGATGC AAAACTGATTATCTAACCCCGTCTGTCAGCCGCCCTCACTCACATCCCCT TCACCTTTCCTATATCCAATCATCAGAGATCTCAAACCAGATAACATCCT GCTCACAGCCAAGGGTGTTCTTAAGATCGCGGATTTCGGCCTCGCGCGTT ATTTTGGGAACCCCAACGAGACCCTCTCCCCTGGCTTTCAAGTCATTACT CGGCAGTATCGACCGCCCGAGCTTCTGTTAGGCAGTCGATTGTATGGCCC CGCAGTGGATATATGGTCGGTGGGTTGTATCATGGTACGTTCTCTCAAGA TAAGAGTCATATATTTTGTAATATTGTTTTGCGAAGACGCCTGTGGCCTG ATGCCGGCAGCTACCCCGTCACGCGGGGCGGGCTTATTTTGGTGCACGCA CTTTGTCAATAAATTTATAATCACGGTGGTAACATTTTTTAGTTGTCAGT ATGGCGAATGTAGGTACTAATAAAATTGGTGCCTCAAATAAGAAAGTGGC CGCGTGATTAGATCTTATTTTAGGTCATGTTGGCTATGGTTGCAGGGTGA TGTGTGTGTCGGAAAATTTATAAATATGTGGCTATCCTTTAGACTTCGAT CGATCCTTCATGTGCATCACTCATTTGATAAGCCCAAGCAATTCGACTGA CATGTCACAGGCTTTAGTTTTCTCCGCTATGTTCCTTTGTTTCGGCACTC ACGCACTTGCACACGCCCATATACACAGGGAGAGGTCCGATTGCGCGAGT TGCTGTTCCGCGGAGATGTGGACACGGACATTGCGCAACTGGCCAAGATC TTTCAGATTCTAGGTACGCGAAAAGACGGGAGGGAGTGGCCGGGGAGAAA GGAAACGAGCGAGCGATGTGCAGTAAGTGTGTTGTTGATGATTACAAACA TTAAACGAATGAACAATCCTAGTCTGACTTCTCTTTATGGAGAGAAACTT TATGCGGTTATGAGAATGAAACAGCACGTACACACAAACGCTTCGTGAAG CTGAGGAGGCGTAGGAGGAGGGGCACAGGGGTGCAAGGTCTGCACCTATG GAGTCAGATCGTGTCCCCCCAGCTGTCTCTCGCTTTCTCACCACCTACAA ATCATGAAAACAACAGGCACGCCCACCGAAGCGAATTGGCCAGGCTACAC GGCATTACCGGATTATCCTCGCTATAACATCACCCCGCAGCCTCCGCCGG AATTGGCGCGCCTACTTCCGTCTTGCCGTCCTGACGAGCTCGATTTGCTT CAAAAGCTCGTGTCGCTCGATCCCAACGCGCGCTTGACGGCCCAAGAAGC CTTGGATCACGGCTATTTTCGCGCGGAACCCCGGGCGACGCCACCGTCAC AGTTACCCTTGCCTTTGGAAGGGAAAGGAGGCGTCAAGGAGGAGGAGGAC CATTAGGGCGTAGGGGGAAACGGGCCCTCCGTTTAATTGGTTAAAAATCG AGAGCAAGATGTACATAAAGAAATAAATGTGCATACAAGTGCTTTTTAA
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Coding sequence (CDS) from alignment at chr11:122844..125492-

>NO11G00290.5 ID=NO11G00290.5|Name=NO11G00290.5|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr11:122844..125492- (Nannochloropsis oceanica)
ATGGCAACCGCCGGCCTTGCATACACCAAAGGCCGGGTGGTGGGCAAGGG
TACTTGGGGCAGTGTCTGCTTGGGCACGGTCAGCAAGACGGGGCGGAAGG
TGGCCATCAAAGAGATCCACCGTTCCATGGAGAGATACGAGGACGGAGTC
AACTTCTCGGTCCTGCGCGAGATCAAGGTGTTGATGGAACTCAAGCACAC
CAACATCGTGGAGTTACTCGATGTCCGCGTCACGGAGGACGGGCTCGAAC
TTGTCTTGGATTACTGCGAGACAAACCTGAAGCGGGTTGTAGAGGACCGC
CGCTTGGTCAAGGCAATTCGGTATGAGGATACCAAAGGCTTCATGCAGCA
GCTATTGCGGGGCCTCCACTTCCTCCACTCCAACTGGATCTTGCATCGAG
ATCTCAAACCAGATAACATCCTGCTCACAGCCAAGGGTGTTCTTAAGATC
GCGGATTTCGGCCTCGCGCGTTATTTTGGGAACCCCAACGAGACCCTCTC
CCCTGGCTTTCAAGTCATTACTCGGCAGTATCGACCGCCCGAGCTTCTGT
TAGGCAGTCGATTGTATGGCCCCGCAGTGGATATATGGTCGGTGGGTTGT
ATCATGGTACGTTCTCTCAAGATAAGAGTCATATATTTTGTAATATTGTT
TTGCGAAGACGCCTGTGGCCTGATGCCGGCAGCTACCCCGTCACGCGGGG
CGGGCTTATTTTGGTGCACGCACTTTGTCAATAAATTTATAATCACGGTG
GTAACATTTTTTAGTTGTCAGTATGGCGAATGTAGGTACTAA
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Synonyms
Publications