NO11G00240.1, NO11G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00240.1
Unique NameNO11G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1771
Alignment locationchr11:100445..103497 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:100445..103497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00240.1 vs.
Match: EWM25201.1 (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 203.0 bits (515), Expect = 1.500e-48
Identity = 129/286 (45.10%), Postives = 167/286 (58.39%), Query Frame = 0 
Query:   16 ALLFILAIIGLAQC--VSFVNAVAPNGPLHTVGLNEEEHDTLASGSLHPHLRRARDHTSGSCADLHGTKENTEEFNFFQFMDGKEREVLVPPAAQETTRGTTTPVCPKNARFAFCAVDPKCALTCSNHIEHSKGGTPAGVVKMCNKMCYQRCECLPDFYLLEGFCVPEDDCLSIKEATSPAKKRQAIEVALAGFDPITDRLTPLED--EEKGKKEGGKPPFSIPRFPPLGRSGGGGTEEGG----------DDIIDDVNEVLGTVTGGLWPGGEQGKDKR-RKEEG 287
            A L ++ + GL     VS   A+  +   +T     EE D   S S H +LR   DH     ADL GTK +    N        ERE+ VPPAA+E T     P CPKNA ++FCA++PKCA TC+ H + S+     GVVKMCN+MCYQRC+CLPDFYLL+GFC+ E+ CLSI +A + +KKRQA+E AL GFDP  DR+ P +D  EE+G +EGG+                GG EEGG          D I+D V++VLG VTGGLWP  ++G++   RKE G
Sbjct:   13 ASLLLVFLFGLLTTFFVSCATAIETSTTAYT-----EELDARTSSS-HSNLRPRTDHPFDRLADLEGTKGS---LNGKIRPKSSEREIFVPPAAEEETLNPL-PRCPKNAHYSFCAIEPKCAATCAEHRD-SQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQAVEEALKGFDPKMDRIFPRDDSLEERGGREGGEE---------------GGREEGGAPFPFGTGSEDGILDGVSDVLGAVTGGLWP--DEGRETAGRKEVG 270
The following BLAST results are available for this feature:
BLAST of NO11G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25201.11.500e-4845.10Trypsin Inhibitor-like, cysteine rich domain prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00240NO11G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00240.1NO11G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00240.1.cds1NO11G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds2NO11G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds3NO11G00240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds4NO11G00240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds5NO11G00240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds6NO11G00240.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds7NO11G00240.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00240.1.cds8NO11G00240.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00240.1 ID=NO11G00240.1|Name=NO11G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
ATAGGAGACGCAAGTAAGACATAACAAAAAGGCCTGCAGAATGAGACCCG
CGGCTGAAGCCCCGTCTTGCCGGCCCCTGCACCACGCCCTCCTGTTCATC
CTCGCTATTATTGGTCTTGCACAATGTGTCTCTTTCGTCAACGCTGTTGC
TCCTAATGGACCCCTCCACACTGTCGGCCTGAACGAGGAAGAGCACGACA
CCCTCGCATCCGGATCCCTCCATCCTCATTTACGCCGTGCCCGGGACCAC
ACCTCTGGCAGTTGTGCAGACCTCCATGGTACCAAAGAAAACACCGAAGA
GTTCAATTTCTTCCAGTTCATGGACGGAAAAGAGCGAGAGGTCCTCGTTC
CTCCGGCGGCACAAGAAACGACGCGTGGCACCACTACTCCCGTCTGCCCC
AAGAACGCCCGTTTCGCTTTTTGTGCCGTTGATCCGAAATGTGCACTTAC
CTGCTCTAATCACATAGAGCACTCCAAAGGGGGGACACCGGCAGGTGTGG
TAAAAATGTGCAACAAAATGTGCTATCAGCGCTGTGAGTGTCTACCTGAT
TTTTATCTGCTCGAGGGCTTCTGCGTCCCGGAAGATGATTGTCTCAGCAT
TAAGGAAGCCACGTCACCAGCCAAGAAACGGCAGGCCATCGAAGTGGCGT
TGGCGGGCTTCGACCCCATCACGGACCGTCTCACTCCCCTTGAGGACGAG
GAGAAAGGGAAGAAGGAGGGAGGAAAGCCTCCCTTTTCCATTCCTCGTTT
TCCCCCTTTGGGGCGCTCCGGGGGCGGCGGTACCGAAGAGGGAGGAGATG
ACATCATCGATGATGTGAATGAAGTTTTGGGCACCGTCACAGGAGGGCTT
TGGCCGGGTGGGGAGCAGGGAAAGGACAAGCGTCGTAAAGAGGAAGGGGA
GGAAGACGAAGAAGAAGAGGAAGAGGAGGAGGAAAACGAGGGAAGGCTGG
GCGGCTCTATCCACGTGGGTCGCACTACGGTATCAGTGAATATTGCCGCC
AATGAAGGACTGGAGTTTGTGGAGGATGAACAGGCATTGGGAGAGGCAGG
GAGATAAATGTCTGGCGAAAGAGAAGAAGGGGGAAAGTATGAACACGTTG
TCTATAGGCGTTGCTGTACCTAAATTTAAAGAAGTGCATGAACCTATCCA
TTGGGGGTCTGTCATGCTCGCTCTAATTTTGCTGCCGAGTGTCGAAGGAA
AACAAACGTTTTCCGTCCCAAGCCTGAAGTTGGCCACAGAAGAACCTTTC
CATATTGTGGTATTAATGCCAATTTCTCCCGATTCCTACACATTGTGGTT
TCTAAACGTCCCCCCCTCCCTCCTGATACCCCGTCCACGTTCGGTCACGT
CATCATTCAGACGATAGTTCATTGTCACCTTTCCGATGTTCATCGACACA
CACTTTATTTGTTTGTCTACATCAAGGCTGAAGTCTTTCCATACGCTATA
CGCGGAAAGGAAGTGTGCGCTTGAGGGGGGGCCACCATTAATGAGCCTCA
TTTTTCTCAGACACTCTCTCCCTTCCCAAGCATCCCATGAAAATCGTCCC
TCTACTCCCACTTGCACGGCTTTCCTCCCATTCAATCATTCTAAACATAT
ATACGTATCTTGTGGTCCTTTTCCCAACCTTTTCGTGCATCAAAAAGGAC
AAAAGCCACTGAATCGAAAGAGCTCTTTATGTTCGTGAACCATGTCAACA
TATCTCCCATGCAACATTTGACACCCCTCGAACAATCACTCCATTCAGTC
GACATTTTCACACAAAAAAAC
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protein sequence of NO11G00240.1

>NO11G00240.1-protein ID=NO11G00240.1-protein|Name=NO11G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MRPAAEAPSCRPLHHALLFILAIIGLAQCVSFVNAVAPNGPLHTVGLNEE
EHDTLASGSLHPHLRRARDHTSGSCADLHGTKENTEEFNFFQFMDGKERE
VLVPPAAQETTRGTTTPVCPKNARFAFCAVDPKCALTCSNHIEHSKGGTP
AGVVKMCNKMCYQRCECLPDFYLLEGFCVPEDDCLSIKEATSPAKKRQAI
EVALAGFDPITDRLTPLEDEEKGKKEGGKPPFSIPRFPPLGRSGGGGTEE
GGDDIIDDVNEVLGTVTGGLWPGGEQGKDKRRKEEGEEDEEEEEEEEENE
GRLGGSIHVGRTTVSVNIAANEGLEFVEDEQALGEAGR*
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mRNA from alignment at chr11:100445..103497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00240.1 ID=NO11G00240.1|Name=NO11G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3053bp|location=Sequence derived from alignment at chr11:100445..103497+ (Nannochloropsis oceanica)
ATAGGAGACGCAAGTAAGACATAACAAAAAGGCCTGCAGAATGAGACCCG
CGGCTGAAGCCCCGTCTTGCCGGCCCCTGCACCACGCCCTCCTGTTCATC
CTCGCTATTATTGGTCTTGCACAATGTGTCTCTTTCGTCAACGCTGTTGC
TCCTAATGGTACGTCTGATCTCTCCCTCTTTTTCCTACCCCTCGATTGTT
CCACCTCATCCTGCCGTGCTTTCCGACAGGACCCCTCCACACTGTCGGCC
TGAACGAGGAAGAGCACGACACCCTCGCATCCGGATCCCTCCATCCTCAT
TTACGCCGTGCCCGGGACCACACCTCTGGCAGTTGTGCAGACCTCCATGG
GTAGGTGCTGGGTCTTGGAGGAAGGGCGGGATGGATGGATGGGTGAGAGG
GTGGGAGGGAGGGTAGGAGGGAGGGTCATCGGAGTATCTTCTTAACTAGT
ATGGGACACCATAAATTTCGTATCTCATCCCCATCCTCCCTCCTTTATTT
CATTACCAGTACCAAAGAAAACACCGAAGAGTTCAATTTCTTCCAGTTCA
TGGACGGAAAAGAGCGAGAGGTCCTCGTTCCTCCGGCGGCACAAGAAACG
ACGCGTGGCACCACTACTCCCGTCTGCCCCAAGAACGCCCGTTTCGCTTT
TTGTGCCGTTGATCCGGTATGTAGGAAGTGAGGGAAAGGGAGCGGGGAGG
GGTGGCAAGGGAGGAAGGGAGGAAGGGAGGATAAAAGGGAGGTGCAAGTG
AACTGAAAGCAAAAAGAAGACAAGCGTCTGACCTCCCCCCCTCTCTCATC
CTTCTCTCCCTACCTCCCCTAACCCCTCCTTCCTTCCTTTGCTAGAAATG
TGCACTTACCTGCTCTAATCACATAGAGCACTCCAAAGGGGGGACACCGG
CAGGTGTGGTAAAAATGTGCAACAAAATGTGCTATCAGCGCTGTGAGTGT
CTACCTGATTTTTATCTGCTCGAGGTAGGGAGGGAGGGAAGGAGGGAGGG
AGGGAGGAAGGGAGGGAGGGAGGAAGTGAAGGAGGGAATCGAGAGTGGAG
ACATGCTATATTTTCTCATAATTACGGTGCCTGTCAAATAACCATCGAAG
TGACGGCGGAATCATCATGCGATCTACACAACGGCCTAATGATTACCCTC
CTCCTCTTTTCCCTTCCTCCCTCCTCCTCCCTCCCTCCTTCCCTCCCTCC
CTTCTTCCCTCCTCCCCTCCTTCCCTCCCTCCTCCTCTCACAGGGCTTCT
GCGTCCCGGAAGATGATTGTCTCAGCATTAAGGAAGCCACGTCACCAGCC
AAGAAACGGCAGGTCAGAAACAGAGGAACAGAGGGAGGGAGGAGCGAAGG
AAGGAAGGAAGGAAGGAAGGAAGCGAGGGAGGGAGGGAGGGAGGAAGGGG
TTGGTGGTGGGAACACATGAAAAGGAGAGCATGTAGATATCCATCCAGCT
GACTGCAGTCTCTACGTCTCCCTCCATCTCTCCTTTTCTCCTTTTTCTTC
CGTTTCTCCTTTTTCTTCCGTTTCTTCTTTTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTACTTTCTTTTCTTCCGTGGCACTGAAACTCCC
CATTTCCCTCCTCCTCTTTTCCTCCCTCTTGTCCCCCTTCAGGCCATCGA
AGTGGCGTTGGCGGGCTTCGACCCCATCACGGACCGTCTCACTCCCCTTG
AGGACGAGGAGAAAGGGAAGAAGGAGGGAGGAAAGCCTCCCTTTTCCATT
CCTCGTTTTCCCCCTTTGGGGCGCTCCGGGGGCGGCGGTACCGAAGAGGG
AGGAGATGACATCATCGATGATGTGAATGAAGTTTTGGGCACCGTCACAG
GAGGGCTTTGGCCGGGTGGGGAGCAGGTAAGGAGGAAAAGGAAGGGAGAG
AGGGAAGGGAGGGAGGGAAAGAGGAAGGGAGGGAGGCAGGGAGGCCAATT
TCTGAGTACCTACGGTCTCGCTCTTCCCCGTGTACAGGGAAAGGACAAGC
GTCGTAAAGAGGAAGGGGAGGAAGACGAAGAAGAAGAGGAAGAGGAGGAG
GAAAACGAGGGAAGGCTGGGCGGCTCTATCCACGTGGGTCGCACTACGGT
ATCAGGTACTTGCTGACATGGACGACCTAGATTTCTTTCTTCTCTCCCTT
CCTTCCTCTCTCCCTCTGTCATTTCCTCCCCATTTTCTCAAAAATATTGA
TATTTATCGTTTCTACCATCTATGAAACACTTACGTTTCCCCCCCCTTCT
TCATCCCTCCACTTCCAGTGAATATTGCCGCCAATGAAGGACTGGAGTTT
GTGGAGGATGAACAGGCATTGGGAGAGGCAGGGAGATAAATGTCTGGCGA
AAGAGAAGAAGGGGGAAAGTATGAACACGTTGTCTATAGGCGTTGCTGTA
CCTAAATTTAAAGAAGTGCATGAACCTATCCATTGGGGGTCTGTCATGCT
CGCTCTAATTTTGCTGCCGAGTGTCGAAGGAAAACAAACGTTTTCCGTCC
CAAGCCTGAAGTTGGCCACAGAAGAACCTTTCCATATTGTGGTATTAATG
CCAATTTCTCCCGATTCCTACACATTGTGGTTTCTAAACGTCCCCCCCTC
CCTCCTGATACCCCGTCCACGTTCGGTCACGTCATCATTCAGACGATAGT
TCATTGTCACCTTTCCGATGTTCATCGACACACACTTTATTTGTTTGTCT
ACATCAAGGCTGAAGTCTTTCCATACGCTATACGCGGAAAGGAAGTGTGC
GCTTGAGGGGGGGCCACCATTAATGAGCCTCATTTTTCTCAGACACTCTC
TCCCTTCCCAAGCATCCCATGAAAATCGTCCCTCTACTCCCACTTGCACG
GCTTTCCTCCCATTCAATCATTCTAAACATATATACGTATCTTGTGGTCC
TTTTCCCAACCTTTTCGTGCATCAAAAAGGACAAAAGCCACTGAATCGAA
AGAGCTCTTTATGTTCGTGAACCATGTCAACATATCTCCCATGCAACATT
TGACACCCCTCGAACAATCACTCCATTCAGTCGACATTTTCACACAAAAA
AAC
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Coding sequence (CDS) from alignment at chr11:100445..103497+

>NO11G00240.1 ID=NO11G00240.1|Name=NO11G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr11:100445..103497+ (Nannochloropsis oceanica)
ATGAGACCCGCGGCTGAAGCCCCGTCTTGCCGGCCCCTGCACCACGCCCT
CCTGTTCATCCTCGCTATTATTGGTCTTGCACAATGTGTCTCTTTCGTCA
ACGCTGTTGCTCCTAATGGACCCCTCCACACTGTCGGCCTGAACGAGGAA
GAGCACGACACCCTCGCATCCGGATCCCTCCATCCTCATTTACGCCGTGC
CCGGGACCACACCTCTGGCAGTTGTGCAGACCTCCATGGTACCAAAGAAA
ACACCGAAGAGTTCAATTTCTTCCAGTTCATGGACGGAAAAGAGCGAGAG
GTCCTCGTTCCTCCGGCGGCACAAGAAACGACGCGTGGCACCACTACTCC
CGTCTGCCCCAAGAACGCCCGTTTCGCTTTTTGTGCCGTTGATCCGAAAT
GTGCACTTACCTGCTCTAATCACATAGAGCACTCCAAAGGGGGGACACCG
GCAGGTGTGGTAAAAATGTGCAACAAAATGTGCTATCAGCGCTGTGAGTG
TCTACCTGATTTTTATCTGCTCGAGGGCTTCTGCGTCCCGGAAGATGATT
GTCTCAGCATTAAGGAAGCCACGTCACCAGCCAAGAAACGGCAGGCCATC
GAAGTGGCGTTGGCGGGCTTCGACCCCATCACGGACCGTCTCACTCCCCT
TGAGGACGAGGAGAAAGGGAAGAAGGAGGGAGGAAAGCCTCCCTTTTCCA
TTCCTCGTTTTCCCCCTTTGGGGCGCTCCGGGGGCGGCGGTACCGAAGAG
GGAGGAGATGACATCATCGATGATGTGAATGAAGTTTTGGGCACCGTCAC
AGGAGGGCTTTGGCCGGGTGGGGAGCAGGGAAAGGACAAGCGTCGTAAAG
AGGAAGGGGAGGAAGACGAAGAAGAAGAGGAAGAGGAGGAGGAAAACGAG
GGAAGGCTGGGCGGCTCTATCCACGTGGGTCGCACTACGGTATCAGTGAA
TATTGCCGCCAATGAAGGACTGGAGTTTGTGGAGGATGAACAGGCATTGG
GAGAGGCAGGGAGATAA
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Synonyms
Publications