NO11G00180.2, NO11G00180.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00180.2
Unique NameNO11G00180.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1531
Alignment locationchr11:77358..78974 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:77358..78974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00180.2 vs.
Match: XP_005855533.1 (hypothetical protein NGA_0619000 [Nannochloropsis gaditana CCMP526]; EKU20827.1 hypothetical protein NGA_0619000 [Nannochloropsis gaditana CCMP526]; EWM25204.1 hypothetical protein Naga_100311g4 [Nannochloropsis gaditana]; EWM25205.1 hypothetical protein Naga_100311g4 [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 1.300e-32
Identity = 78/163 (47.85%), Postives = 107/163 (65.64%), Query Frame = 0 
Query:    4 FLSHLVPFLLLQSLNGHPTLRGADKSLTFKIDNDTETDLRVHRPSASNIPPL--SSLLAKAAAVSETPAGAAAAAAAESQIAEGEHCKVQFKWVVSRNQRPSSDGALGVIMILDHAGRESDESTTPAFREWVAGETYEDELEFAHCPNTRIQGFRVVFYPYQV 165
            +L   V  L+L S+ G   LRG +  +      D+ T+L    P+  +  P   S L    +         AA AAAE ++ +G HCK+Q+KW VS++Q+ S+DG+LGVIM+LD AGR+SDE+TTPAFREW  G T+EDE+EFA+CP+ +IQGFR+VFYPYQV
Sbjct:    7 YLLQCVFLLVLPSMGGKAVLRGPESVVA-----DSTTNLEADPPTIISYSPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQQNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHAKIQGFRIVFYPYQV 164
The following BLAST results are available for this feature:
BLAST of NO11G00180.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855533.11.300e-3247.85hypothetical protein NGA_0619000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00180NO11G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00180.2NO11G00180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00180.2.cds1NO11G00180.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00180.2.cds2NO11G00180.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00180.2 ID=NO11G00180.2|Name=NO11G00180.2|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp
ACGACGCTTTCCATGGTGAAGCTTCAAGTATATTGGTAATATTCAACTAT
TTGGTAGGATACTGACGGGTGCGAGACTGATCATCATTATCTCTGGTAGA
AGAGTCCATGATTGATAAATTGTCTCATTTCACTCAACTCAACAAATTCC
TCTTGCGAGTGCACCCTCCGGAAGGGCTTTGTATGACGCGTGAGGAGCAG
CAGACGGACATGCACCGTGCAGAGCACCGCGGATCCATACACCCTGCACT
TAGGTCTCTTACACATATTGCAGCTTTGCTCGCCCTCGAGAATTGTCGTG
CTTAGCCTGTAAATCTGCTCGTCATCCTCTTTAGACAGAAAAATGGGCCC
AACTTGGAGGAAATAACGTCAACTAGCTAACGGCCTCGCCGAATCTCGCT
AATACCCTTATGGGACGCAACAAAAGGCGATGAGAGGGCACGCCAGCACA
CGCACCACACAGGGACATTTATTGACAACAATAAGAATGTAAAAGAAGCA
AGGGCACGTGTGTAGGGATTGCGTCGATGGTTGTTGGCTTTCCTTTCTCC
TTTCAGCAGCGTCATCATCTCTCCACTCTTATTTGCACACATACCACAAA
AACCACAGCGCACAATGTGCACCTTCCTATCCCACCTCGTGCCCTTCCTC
CTGCTCCAGAGCTTGAATGGTCACCCCACTCTGCGGGGCGCGGACAAGTC
TCTCACATTTAAGATTGACAACGACACCGAGACAGATCTGCGAGTCCATC
GTCCCTCTGCCTCAAACATACCGCCACTGTCGTCTCTTCTTGCCAAAGCA
GCTGCTGTATCAGAGACACCCGCGGGAGCCGCTGCTGCAGCAGCTGCCGA
GTCACAAATCGCAGAAGGGGAGCACTGCAAGGTGCAATTTAAGTGGGTCG
TCTCGCGGAATCAGCGGCCCTCGTCGGACGGAGCTCTGGGCGTCATCATG
ATACTGGACCACGCCGGCAGAGAAAGCGACGAATCCACGACTCCTGCCTT
CCGGGAGTGGGTGGCCGGCGAGACTTATGAGGACGAGCTTGAATTTGCGC
ATTGCCCGAATACCCGGATCCAAGGTTTTCGAGTCGTCTTTTATCCGTAC
CAGGTAGGCAGCAGGTACCTCTTCCTCTTTTTCTACTCCCTCGATATTTT
CCTCCCTTCTCGTTCTCTTCCCTGGACGCCTTACCCCCCTGCACGCCTCC
CTCCCTCCCTCCCTCGCCCAGGTGCCTGGCTCCGGTCCGCCGGAGGAGGA
CGATCCGTCCTCCCTCTCATTCTCACACGTGGAGGCTCTTGAGACGATTC
CTATTCTACACGAGACATGGGCGTGGGCGGAGGAAGGGGGAAGGGGAGGG
AAACAGGGTCCGTTTGTTGTGTCAATGGACGACTATACCGTGGCCTGGAT
TTTGAAGGAATGAAGGTGAGAGAGGGGAAGGGAAAAAGGGGAAGAAGGAT
TGGATAGAGGCGGAGCATGTTTTATTAGGGTGATACAGGGCAAGAAAGCA
AGAAGACATATAAACGCAATTAAGAGACCCC
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protein sequence of NO11G00180.2

>NO11G00180.2-protein ID=NO11G00180.2-protein|Name=NO11G00180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MCTFLSHLVPFLLLQSLNGHPTLRGADKSLTFKIDNDTETDLRVHRPSAS
NIPPLSSLLAKAAAVSETPAGAAAAAAAESQIAEGEHCKVQFKWVVSRNQ
RPSSDGALGVIMILDHAGRESDESTTPAFREWVAGETYEDELEFAHCPNT
RIQGFRVVFYPYQVGSRYLFLFFYSLDIFLPSRSLPWTPYPPARLPPSLP
RPGAWLRSAGGGRSVLPLILTRGGS*
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mRNA from alignment at chr11:77358..78974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00180.2 ID=NO11G00180.2|Name=NO11G00180.2|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at chr11:77358..78974- (Nannochloropsis oceanica)
ACGACGCTTTCCATGGTGAAGCTTCAAGTATATTGGTAATATTCAACTAT
TTGGTAGGATACTGACGGGTGCGAGACTGATCATCATTATCTCTGGTAGA
AGAGTCCATGATTGATAAATTGTCTCATTTCACTCAACTCAACAAATTCC
TCTTGCGAGTGCACCCTCCGGAAGGGCTTTGTATGACGCGTGAGGAGCAG
CAGACGGACATGCACCGTGCAGAGCACCGCGGATCCATACACCCTGCACT
TAGGTCTCTTACACATATTGCAGCTTTGCTCGCCCTCGAGAATTGTCGTG
CTTAGCCTGTAAATCTGCTCGTCATCCTCTTTAGACAGAAAAATGGGCCC
AACTTGGAGGAAATAACGTCAACTAGCTAACGGCCTCGCCGAATCTCGCT
AATACCCTTATGGGACGCAACAAAAGGCGATGAGAGGGCACGCCAGCACA
CGCACCACACAGGGACATTTATTGACAACAATAAGAATGTAAAAGAAGCA
AGGGCACGTGTGTAGGGATTGCGTCGATGGTTGTTGGCTTTCCTTTCTCC
TTTCAGCAGCGTCATCATCTCTCCACTCTTATTTGCACACATACCACAAA
AACCACAGCGCACAATGTGCACCTTCCTATCCCACCTCGTGCCCTTCCTC
CTGCTCCAGAGCTTGAATGGTCACCCCACTCTGCGGGGCGCGGACAAGTC
TCTCACATTTAAGATTGACAACGACACCGAGACAGATCTGCGAGTCCATC
GTCCCTCTGCCTCAAACATACCGCCACTGTCGTCTCTTCTTGCCAAAGCA
GCTGCTGTATCAGAGACACCCGCGGGAGCCGCTGCTGCAGCAGCTGCCGA
GTCACAAATCGCAGAAGGGGAGCACTGCAAGGTGCAATTTAAGTGGGTCG
TCTCGCGGAATCAGCGGCCCTCGTCGGTAAGAAAGGAAGGAGGAATGGAG
GGAGGGTAGGAGGGAGCTTGAAAGAGCTGCACATGGTCACCCCTTCTATT
TTATCTCTACAGGACGGAGCTCTGGGCGTCATCATGATACTGGACCACGC
CGGCAGAGAAAGCGACGAATCCACGACTCCTGCCTTCCGGGAGTGGGTGG
CCGGCGAGACTTATGAGGACGAGCTTGAATTTGCGCATTGCCCGAATACC
CGGATCCAAGGTTTTCGAGTCGTCTTTTATCCGTACCAGGTAGGCAGCAG
GTACCTCTTCCTCTTTTTCTACTCCCTCGATATTTTCCTCCCTTCTCGTT
CTCTTCCCTGGACGCCTTACCCCCCTGCACGCCTCCCTCCCTCCCTCCCT
CGCCCAGGTGCCTGGCTCCGGTCCGCCGGAGGAGGACGATCCGTCCTCCC
TCTCATTCTCACACGTGGAGGCTCTTGAGACGATTCCTATTCTACACGAG
ACATGGGCGTGGGCGGAGGAAGGGGGAAGGGGAGGGAAACAGGGTCCGTT
TGTTGTGTCAATGGACGACTATACCGTGGCCTGGATTTTGAAGGAATGAA
GGTGAGAGAGGGGAAGGGAAAAAGGGGAAGAAGGATTGGATAGAGGCGGA
GCATGTTTTATTAGGGTGATACAGGGCAAGAAAGCAAGAAGACATATAAA
CGCAATTAAGAGACCCC
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Coding sequence (CDS) from alignment at chr11:77358..78974-

>NO11G00180.2 ID=NO11G00180.2|Name=NO11G00180.2|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr11:77358..78974- (Nannochloropsis oceanica)
ATGTGCACCTTCCTATCCCACCTCGTGCCCTTCCTCCTGCTCCAGAGCTT
GAATGGTCACCCCACTCTGCGGGGCGCGGACAAGTCTCTCACATTTAAGA
TTGACAACGACACCGAGACAGATCTGCGAGTCCATCGTCCCTCTGCCTCA
AACATACCGCCACTGTCGTCTCTTCTTGCCAAAGCAGCTGCTGTATCAGA
GACACCCGCGGGAGCCGCTGCTGCAGCAGCTGCCGAGTCACAAATCGCAG
AAGGGGAGCACTGCAAGGTGCAATTTAAGTGGGTCGTCTCGCGGAATCAG
CGGCCCTCGTCGGACGGAGCTCTGGGCGTCATCATGATACTGGACCACGC
CGGCAGAGAAAGCGACGAATCCACGACTCCTGCCTTCCGGGAGTGGGTGG
CCGGCGAGACTTATGAGGACGAGCTTGAATTTGCGCATTGCCCGAATACC
CGGATCCAAGGTTTTCGAGTCGTCTTTTATCCGTACCAGGTAGGCAGCAG
GTACCTCTTCCTCTTTTTCTACTCCCTCGATATTTTCCTCCCTTCTCGTT
CTCTTCCCTGGACGCCTTACCCCCCTGCACGCCTCCCTCCCTCCCTCCCT
CGCCCAGGTGCCTGGCTCCGGTCCGCCGGAGGAGGACGATCCGTCCTCCC
TCTCATTCTCACACGTGGAGGCTCTTGA
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Synonyms
Publications