NO11G00080.1, NO11G00080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00080.1
Unique NameNO11G00080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length971
Alignment locationchr11:25769..27930 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:25769..27930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G00080.1 vs.
Match: EWM25216.1 (hypothetical protein Naga_100751g2 [Nannochloropsis gaditana])

HSP 1 Score: 240.7 bits (613), Expect = 5.600e-60
Identity = 153/334 (45.81%), Postives = 196/334 (58.68%), Query Frame = 0 
Query:    1 MHLSPTRRQPTGGSSSSPPSSP-----------------SARYSTVAPRPTT------------RLPFEGEED-------DDEDEEEETGSRAGDGGKGGGGDRHTRHVQVQALVEKRILNLDYIRRVHDGGQHWLSTVVLSKATIQRYIETEAPPSRPLVFFHLGLSLAKLLDALPPPRP----------------------------SSL-ALAQIFEEMEYHTASGAAQAVKLFLAKPSESPYPEQTPADPNEPINPRIYRFGSDVVFESFFSPHIPFQLDYLEVLDGLCHTLALMYQAIG-HHAESLKREAALFDALVKIDVKI---KHH 266
            M  SPTR+ P   S+SSP SS                  SA  S+V+   +             R   +GEED       ++E+EEEE      +  +      HTRHVQ+QALVEKRILNLDYIR+VH GGQ+WL TV+LS+  I  Y+ ++ P SR LVFFHLG+S+  LL+A    RP                            S L +LAQ+FEEMEYHT++GA QA+K  LAK  ++P+PEQ P    EPINPRI RF ++VVF++F +P+IPF LDYLEVLD LCHTLAL+Y+ +G  HA SL+R+AALF+ LVKID K+    HH
Sbjct:    1 MPQSPTRKAPLNSSTSSPSSSALYSSLTQQRCVKYENSFSATLSSVSNEQSQTNVVVEEGTQSRREEMKGEEDAEEEEEEEEEEEEEEEEEEEEERRRKKNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFPEQAPEGSLEPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHH 334
The following BLAST results are available for this feature:
BLAST of NO11G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25216.15.600e-6045.81hypothetical protein Naga_100751g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00080NO11G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00080.1NO11G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00080.1.cds1NO11G00080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds2NO11G00080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds3NO11G00080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds4NO11G00080.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds5NO11G00080.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds6NO11G00080.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds7NO11G00080.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00080.1.cds8NO11G00080.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00080.1 ID=NO11G00080.1|Name=NO11G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
CGTACCAACCTCCCACCATATCTCTCCCACACCCTTCCTCTCACTCCACC
CCAATTCATTCACACGCTCCAGCCAAGCAACAAGCAATGCACCTGTCCCC
CACACGTCGGCAACCCACGGGGGGCTCCTCATCTTCCCCTCCGTCTTCAC
CAAGCGCACGCTACTCCACCGTCGCGCCAAGACCCACCACACGACTGCCT
TTCGAAGGAGAGGAGGACGACGATGAAGACGAGGAGGAGGAAACGGGGTC
GAGAGCCGGGGATGGGGGGAAAGGAGGAGGAGGCGATCGGCACACGCGGC
ACGTGCAGGTTCAGGCGTTGGTGGAAAAGCGGATTCTGAATCTAGACTAC
ATACGCAGAGTGCACGACGGAGGACAGCACTGGCTCAGCACCGTCGTTCT
CTCCAAGGCCACCATACAGCGGTACATCGAGACGGAGGCACCTCCCTCCC
GTCCTCTTGTCTTCTTCCACCTAGGCCTTTCCCTGGCTAAGCTCCTCGAC
GCCCTGCCCCCCCCCCGACCCTCTTCTCTGGCTCTGGCGCAGATATTTGA
GGAAATGGAATACCACACCGCCAGCGGGGCCGCACAAGCTGTCAAGCTTT
TTCTGGCCAAGCCCTCTGAGTCTCCCTATCCCGAGCAGACCCCGGCAGAT
CCGAATGAGCCCATCAATCCTAGGATCTACCGCTTTGGTTCTGATGTTGT
TTTCGAGAGCTTCTTTTCGCCGCACATCCCGTTTCAACTCGACTACCTGG
AGGTATTAGACGGCTTGTGCCACACCCTGGCCCTCATGTACCAAGCCATA
GGACATCACGCCGAGTCCCTGAAGAGGGAGGCGGCACTATTCGACGCCCT
TGTCAAGATTGATGTCAAGATCAAGCACCACATCATTAATCCCATCGCGA
AGGAACTCACGGACGTCACTGCCAGGCTGGCCAAGCTAGAGTTGGAAGGG
CTGAGGGAAGGGTGGCGGTAG
back to top

protein sequence of NO11G00080.1

>NO11G00080.1-protein ID=NO11G00080.1-protein|Name=NO11G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MHLSPTRRQPTGGSSSSPPSSPSARYSTVAPRPTTRLPFEGEEDDDEDEE
EETGSRAGDGGKGGGGDRHTRHVQVQALVEKRILNLDYIRRVHDGGQHWL
STVVLSKATIQRYIETEAPPSRPLVFFHLGLSLAKLLDALPPPRPSSLAL
AQIFEEMEYHTASGAAQAVKLFLAKPSESPYPEQTPADPNEPINPRIYRF
GSDVVFESFFSPHIPFQLDYLEVLDGLCHTLALMYQAIGHHAESLKREAA
LFDALVKIDVKIKHHIINPIAKELTDVTARLAKLELEGLREGWR*
back to top

mRNA from alignment at chr11:25769..27930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00080.1 ID=NO11G00080.1|Name=NO11G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp|location=Sequence derived from alignment at chr11:25769..27930- (Nannochloropsis oceanica)
CGTACCAACCTCCCACCATATCTCTCCCACACCCTTCCTCTCACTCCACC
CCAATTCATTCACACGCTCCAGCCAAGCAACAAGCAATGCACCTGTCCCC
CACACGTCGGCAACCCACGGGGGGCTCCTCATCTTCCCCTCCGTCTTCAC
CAAGCGCACGCTACTCCACCGTCGCGCCAAGACCCACCACACGACTGCCT
TTCGAAGGAGAGGAGGACGACGATGAAGACGAGGAGGAGGAAACGGGGTC
GAGAGCCGGGGATGGGGGGAAAGGAGGAGGAGGCGATCGGCACACGCGGC
ACGTGCAGGTTCAGGCGTTGGTGGAAAAGCGGATTCTGAATCTAGACTAC
ATACGCAGAGTGCACGACGGTGCGTGAGGAGGATAGGAGGGGAAAGGAGA
GGGAGTGTTGGATGGAAAGGGCGGTGTGGCGATGGCGAGATCAGCGTGAG
CATTCATCGAGACTTAGAAGACCGGCTACCATAATGTACAGGCTCGGTGC
AGAAGCTGCCGGTGACTCATGGTCCATATCCCACAAGCCCTTCCATCCCT
TTCTCCCTCCCTCCTTCCTTTCCCGCTCTCACAGGAGGACAGCACTGGCT
CAGCACCGTCGTTCTCTCCAAGGCCACCATACAGCGGTACATCGAGACGG
AGGTAGGGAAAGAGAGGGCGCGGAGAATGATGGAGAGATGCAGGGCAAGA
AGGAAAGATAGCAAGGGCGTTGGGTGGAGAAGTGAGGCATGGAAGCAGCG
CCACCCTAATTGATTTGTCCCGGCGTCACCCCCAAACATAGGCACCTCCC
TCCCGTCCTCTTGTCTTCTTCCACCTAGGCCTTTCCCTGGCTAAGCTCCT
CGACGCCCTGCCCCCCCCCCGACCCTCTTCTCTGTTATCCGAGGGGGGGG
GGGGAGGCTGAGGGAGCAAGAGGAGAGAGAGGATGCGGAGGCATGCACCG
CACTGCTAAGGGCTCTGGCGCAGATATTTGAGGTAGGAAGAAAGGAAAAG
AGGTAGTGAGGGAGGATGGGAGAAAGGGAGGGAGGGAGGGAAAGAGGAAG
TGATTGCCTGACCTTACCAACTCGATCGATTCTGACCTCTTGCGCTCCTT
ACTCTCGCATTTTCCCTCCCTGCCCCCCTCCCTCCCTCCCTTTGTCTCTC
CCCAGGAAATGGAATACCACACCGCCAGCGGGGCCGCACAAGCTGTCAAG
CTTTTTCTGGCCAAGCCCTCTGAGTCTCCCTATCCCGAGCAGACCCCGGC
AGGTACAGGAGGCACTGCCCCCCCCCCCTCCCGCCCTCCCTCCTCGTATT
TATCACCATTATTACCATTAAGTCGAAATTTTGTTGTGACATTGATTTCA
TTGTTTCCTTGTTGTTTTCTTCTTCTATGGCGGCCACATCCAACCTCTTT
CTTGCTTCTATAATTTATTAACTTTCGCCCCAACTTGGGCCCCTCCCTTC
CCACACATCTCCCCTTCCCTCCCCTCCTCCCTCCTTCCCTAATTTCCTCC
CTTAGATCCGAATGAGCCCATCAATCCTAGGATCTACCGCTTTGGTTCTG
ATGTTGTTTTCGAGGTATGGATTGGAGGGAGCGAGGGAAGGAGAGGTGGG
GAAGGGAGAGAGGGAGGGAAGGAAGGGTGGAACAATAGGTTGAAGACATG
TTCCTGCAAATATTAGACAATCGGAGGAGGAGAAAGAAAAAGAGGACAAT
CACACAATCAATCGAAGGAGGGGGATGACGAAGGGGGTACTTTATTCATT
CATCCATGCACCGTCCCTCCCTTCCCCGCCATCCCGACTCCCGGTCCATC
ACCCACCAGAGCTTCTTTTCGCCGCACATCCCGTTTCAACTCGACTACCT
GGAGGTATTAGACGGCTTGTGCCACACCCTGGCCCTCATGTACCAAGCCA
TAGGACATCACGCCGAGTCCCTGAAGAGGGAGGCGGCACTATTCGACGCC
CTTGTCAAGATTGATGTCAAGGTAGGCTTGTTCTATCTGCCTCCCCACCT
TCCGTCTTCCACGCCTTCCTCTTACTCGCCTCGCTTACATTTCCCCCTTT
CTCTCTCAAGATCAAGCACCACATCATTAATCCCATCGCGAAGGAACTCA
CGGACGTCACTGCCAGGCTGGCCAAGCTAGAGTTGGAAGGGCTGAGGGAA
GGGTGGCGGTAG
back to top

Coding sequence (CDS) from alignment at chr11:25769..27930-

>NO11G00080.1 ID=NO11G00080.1|Name=NO11G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr11:25769..27930- (Nannochloropsis oceanica)
ATGCACCTGTCCCCCACACGTCGGCAACCCACGGGGGGCTCCTCATCTTC
CCCTCCGTCTTCACCAAGCGCACGCTACTCCACCGTCGCGCCAAGACCCA
CCACACGACTGCCTTTCGAAGGAGAGGAGGACGACGATGAAGACGAGGAG
GAGGAAACGGGGTCGAGAGCCGGGGATGGGGGGAAAGGAGGAGGAGGCGA
TCGGCACACGCGGCACGTGCAGGTTCAGGCGTTGGTGGAAAAGCGGATTC
TGAATCTAGACTACATACGCAGAGTGCACGACGGAGGACAGCACTGGCTC
AGCACCGTCGTTCTCTCCAAGGCCACCATACAGCGGTACATCGAGACGGA
GGCACCTCCCTCCCGTCCTCTTGTCTTCTTCCACCTAGGCCTTTCCCTGG
CTAAGCTCCTCGACGCCCTGCCCCCCCCCCGACCCTCTTCTCTGGCTCTG
GCGCAGATATTTGAGGAAATGGAATACCACACCGCCAGCGGGGCCGCACA
AGCTGTCAAGCTTTTTCTGGCCAAGCCCTCTGAGTCTCCCTATCCCGAGC
AGACCCCGGCAGATCCGAATGAGCCCATCAATCCTAGGATCTACCGCTTT
GGTTCTGATGTTGTTTTCGAGAGCTTCTTTTCGCCGCACATCCCGTTTCA
ACTCGACTACCTGGAGGTATTAGACGGCTTGTGCCACACCCTGGCCCTCA
TGTACCAAGCCATAGGACATCACGCCGAGTCCCTGAAGAGGGAGGCGGCA
CTATTCGACGCCCTTGTCAAGATTGATGTCAAGATCAAGCACCACATCAT
TAATCCCATCGCGAAGGAACTCACGGACGTCACTGCCAGGCTGGCCAAGC
TAGAGTTGGAAGGGCTGAGGGAAGGGTGGCGGTAG
back to top
Synonyms
Publications