NO11G00020.1, NO11G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00020.1
Unique NameNO11G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr11:3714..5562 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:3714..5562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00020.1 vs.
Match: EWM25222.1 (Protein of unknown function DUF3326 [Nannochloropsis gaditana])

HSP 1 Score: 652.9 bits (1683), Expect = 7.600e-184
Identity = 339/457 (74.18%), Postives = 370/457 (80.96%), Query Frame = 0 
Query:   14 LILLQVALLSPMALAFTNPAVVPRRRHHIR--STMKVASSFPSSPPTVPPFRSHPYDNLQQQASLWGGNGHFGYTAVLIVPTGIGASIGGYAGDALPVAHGIASVVDTLITHPNVMNAASLYSPRPNILYTEGFALDEFCAGMWGLRPFLPQQGSHKIGLILDAGMEEDMRLRHVQVADGARAALGVDVGAVVVTEEPMEVGLGLMPGGGSWGKVGKPGTLLRAARRLVEEGGCTALAVVARFPEEEEEEEALQAYREGHGVDCVGGAEAVISHLVTRELRVPCAHAPGLPPLEVDAGISPKACGEELGYTFLPCVLANLNRAPLLVVPPPSPATSASSSLWEASTGGGKEGGRGGPRGDGRTLWREDVSAVIAPASAIGGPAVLSLLGGGRETGQATLLIAVEENETLMKTTPEELLPRQMEAGRVVRVKTYLEAMGLLAAHRAGLNPAALTATVP 469
            L+ L +  L P   AF   +    +RHH R  S +K  +S P S  +      HPYDNLQQQAS+WGGN H GYTAVLIVPTGIGASIGGYAGDALPVAHG+ASVVDTLITHPNVMN ASLY+PRPNILYTEGFALDEF  G WGLRPFLP QGSHKIG++LD GMEE+MRLRH+QV +GARA LG+DVGAV VTEEPMEVGLGLMPGGGSWGKVGKP TL++AARRLVEE GCTALAVVARFPEEEE+E ALQAYREGHGVDCVGGAEAVISHLVT EL VPCAHAPGLPPL  DAGISPKACGEELGYTFLPCVLANL RAP+LV P                  G   G   G  GDGRTLWREDVSAV+APASA+GGPAVL LLGG R +GQATLL+AVEENETLM+  PE+L PRQ+ AGRVVR ++YLEAMG+LAAHRAGLN AALT +VP
Sbjct:    9 LVFLHILRLPPHGAAFFFSSCGVSQRHHPRHRSILKACASTPESLSSTA--LRHPYDNLQQQASIWGGNSHHGYTAVLIVPTGIGASIGGYAGDALPVAHGLASVVDTLITHPNVMNGASLYAPRPNILYTEGFALDEFAGGRWGLRPFLPYQGSHKIGVVLDVGMEEEMRLRHLQVVEGARATLGIDVGAVAVTEEPMEVGLGLMPGGGSWGKVGKPNTLMKAARRLVEEEGCTALAVVARFPEEEEDEAALQAYREGHGVDCVGGAEAVISHLVTAELGVPCAHAPGLPPLAADAGISPKACGEELGYTFLPCVLANLQRAPVLVSP---------------HLEGRNRGRNRGREGDGRTLWREDVSAVVAPASAVGGPAVLGLLGGERASGQATLLVAVEENETLMRVWPEDLFPRQLAAGRVVRARSYLEAMGILAAHRAGLNLAALTPSVP 448
The following BLAST results are available for this feature:
BLAST of NO11G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25222.17.600e-18474.18Protein of unknown function DUF3326 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00020NO11G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00020.1NO11G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00020.1.cds1NO11G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00020.1.cds2NO11G00020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00020.1.cds3NO11G00020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00020.1 ID=NO11G00020.1|Name=NO11G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
ATGCGACCTCTATTCCCTGCCATCCGCATGTCCTCGACCCTTATACTGCT
GCAAGTAGCCCTCCTTAGCCCTATGGCGCTCGCTTTTACAAACCCGGCTG
TGGTACCCCGCCGACGGCACCACATCAGGTCTACAATGAAAGTGGCCTCC
TCCTTTCCATCTTCCCCTCCTACTGTCCCTCCTTTCCGCTCGCACCCGTA
CGACAATTTACAACAGCAAGCATCTCTCTGGGGCGGCAACGGCCACTTTG
GTTACACCGCCGTGCTTATCGTGCCCACGGGCATCGGGGCATCTATCGGC
GGATACGCCGGCGACGCACTCCCCGTGGCACATGGCATTGCCTCAGTCGT
GGACACCTTGATTACCCACCCCAACGTCATGAATGCTGCCTCCCTCTACT
CCCCCCGCCCCAACATTCTCTACACGGAGGGCTTCGCGCTCGACGAGTTC
TGCGCAGGCATGTGGGGCCTTCGGCCCTTCCTCCCTCAGCAAGGCAGCCA
CAAGATCGGCCTGATCCTGGACGCGGGCATGGAAGAGGACATGCGGCTGA
GGCACGTACAGGTGGCGGACGGGGCGCGGGCGGCGCTCGGGGTAGATGTG
GGAGCTGTGGTGGTGACGGAGGAGCCAATGGAGGTCGGCCTGGGGCTAAT
GCCGGGGGGGGGGTCGTGGGGGAAGGTGGGCAAGCCGGGGACCTTGCTAA
GGGCGGCAAGGAGGCTGGTGGAGGAGGGTGGCTGCACGGCCTTGGCGGTA
GTGGCACGATTCCCCGAGGAGGAGGAGGAGGAGGAGGCGCTGCAGGCGTA
CCGGGAGGGACATGGCGTGGACTGCGTGGGGGGCGCCGAGGCCGTCATCT
CGCACCTGGTCACGAGGGAGCTGCGGGTGCCGTGTGCGCATGCCCCGGGC
CTGCCGCCGCTGGAGGTGGACGCGGGCATCAGCCCCAAGGCCTGCGGTGA
GGAGCTGGGGTATACATTTCTGCCCTGTGTGCTGGCCAACCTTAATAGGG
CACCCTTGCTGGTGGTTCCCCCGCCGTCCCCCGCGACCTCGGCCTCGTCC
TCCTTGTGGGAGGCCTCAACGGGGGGAGGGAAGGAGGGAGGAAGAGGGGG
GCCGAGGGGGGACGGGCGGACCCTGTGGCGTGAGGATGTATCGGCCGTGA
TTGCCCCGGCATCAGCCATCGGAGGGCCGGCGGTGCTAAGTCTACTGGGG
GGGGGAAGGGAGACGGGCCAGGCCACCTTACTTATTGCGGTGGAGGAAAA
CGAGACGCTGATGAAAACCACGCCGGAGGAGCTGCTCCCGCGGCAGATGG
AGGCGGGGAGGGTAGTGAGGGTCAAGACGTACCTGGAGGCCATGGGTTTA
TTGGCCGCACACAGGGCGGGCTTGAATCCGGCAGCACTGACCGCAACTGT
GCCGAGGGTGCGGGTTTTGTAG
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protein sequence of NO11G00020.1

>NO11G00020.1-protein ID=NO11G00020.1-protein|Name=NO11G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MRPLFPAIRMSSTLILLQVALLSPMALAFTNPAVVPRRRHHIRSTMKVAS
SFPSSPPTVPPFRSHPYDNLQQQASLWGGNGHFGYTAVLIVPTGIGASIG
GYAGDALPVAHGIASVVDTLITHPNVMNAASLYSPRPNILYTEGFALDEF
CAGMWGLRPFLPQQGSHKIGLILDAGMEEDMRLRHVQVADGARAALGVDV
GAVVVTEEPMEVGLGLMPGGGSWGKVGKPGTLLRAARRLVEEGGCTALAV
VARFPEEEEEEEALQAYREGHGVDCVGGAEAVISHLVTRELRVPCAHAPG
LPPLEVDAGISPKACGEELGYTFLPCVLANLNRAPLLVVPPPSPATSASS
SLWEASTGGGKEGGRGGPRGDGRTLWREDVSAVIAPASAIGGPAVLSLLG
GGRETGQATLLIAVEENETLMKTTPEELLPRQMEAGRVVRVKTYLEAMGL
LAAHRAGLNPAALTATVPRVRVL*
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mRNA from alignment at chr11:3714..5562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00020.1 ID=NO11G00020.1|Name=NO11G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp|location=Sequence derived from alignment at chr11:3714..5562+ (Nannochloropsis oceanica)
ATGCGACCTCTATTCCCTGCCATCCGCATGTCCTCGACCCTTATACTGCT
GCAAGTAGCCCTCCTTAGCCCTATGGCGCTCGCTTTTACAAACCCGGCTG
TGGTACCCCGCCGACGGCACCACATCAGGTCTACAATGAAAGTGGCCTCC
TCCTTTCCATCTTCCCCTCCTACTGTCCCTCCTTTCCGCTCGCACCCGTA
CGACAATTTACAACAGCAAGCATCTCTCTGGGGCGGCAACGGCCACTTTG
GTAGGTACAATTTGCCTTTCATTTAAGCTGCTTCTCCATTAGGCCTTTTT
GGTATCGTTCCCTGATCTATATGCCATCCTTATTACCCTCCTCCCCCTCC
TCCCTTCCCTCTCTCCCTCCTTCCCTTGCTCTCTACGCCAGGTTACACCG
CCGTGCTTATCGTGCCCACGGGCATCGGGGCATCTATCGGCGGATACGCC
GGCGACGCACTCCCCGTGGCACATGGCATTGCCTCAGTCGTGGACACCTT
GATTACCCACCCCAACGTCATGAATGGTACTACGGGAGGGAGGGAGGGAG
AAAGGGAGGGAGCAGACTGTGAAAGATCGGGAGGAAGGGACAGAGGGGTA
GAAAGTAGGGGAATGGATGAAACGACGGCGATGTATGGTTCAGCCTGATA
TTCTTGTTTTGATATCGAACAATCCCTGGACCCTCGCTCCCTTGCTCCCT
CCGCTCCTACTCCCAGAACCCTGCAAGACTTCGCCTCCTGTCCCTCATCC
TCAGTCATCTCTCTCCTTCTCCCTTCCCTCCATCTCTCTCCCCTCCCTTT
CTGTCCTTACAGCTGCCTCCCTCTACTCCCCCCGCCCCAACATTCTCTAC
ACGGAGGGCTTCGCGCTCGACGAGTTCTGCGCAGGCATGTGGGGCCTTCG
GCCCTTCCTCCCTCAGCAAGGCAGCCACAAGATCGGCCTGATCCTGGACG
CGGGCATGGAAGAGGACATGCGGCTGAGGCACGTACAGGTGGCGGACGGG
GCGCGGGCGGCGCTCGGGGTAGATGTGGGAGCTGTGGTGGTGACGGAGGA
GCCAATGGAGGTCGGCCTGGGGCTAATGCCGGGGGGGGGGTCGTGGGGGA
AGGTGGGCAAGCCGGGGACCTTGCTAAGGGCGGCAAGGAGGCTGGTGGAG
GAGGGTGGCTGCACGGCCTTGGCGGTAGTGGCACGATTCCCCGAGGAGGA
GGAGGAGGAGGAGGCGCTGCAGGCGTACCGGGAGGGACATGGCGTGGACT
GCGTGGGGGGCGCCGAGGCCGTCATCTCGCACCTGGTCACGAGGGAGCTG
CGGGTGCCGTGTGCGCATGCCCCGGGCCTGCCGCCGCTGGAGGTGGACGC
GGGCATCAGCCCCAAGGCCTGCGGTGAGGAGCTGGGGTATACATTTCTGC
CCTGTGTGCTGGCCAACCTTAATAGGGCACCCTTGCTGGTGGTTCCCCCG
CCGTCCCCCGCGACCTCGGCCTCGTCCTCCTTGTGGGAGGCCTCAACGGG
GGGAGGGAAGGAGGGAGGAAGAGGGGGGCCGAGGGGGGACGGGCGGACCC
TGTGGCGTGAGGATGTATCGGCCGTGATTGCCCCGGCATCAGCCATCGGA
GGGCCGGCGGTGCTAAGTCTACTGGGGGGGGGAAGGGAGACGGGCCAGGC
CACCTTACTTATTGCGGTGGAGGAAAACGAGACGCTGATGAAAACCACGC
CGGAGGAGCTGCTCCCGCGGCAGATGGAGGCGGGGAGGGTAGTGAGGGTC
AAGACGTACCTGGAGGCCATGGGTTTATTGGCCGCACACAGGGCGGGCTT
GAATCCGGCAGCACTGACCGCAACTGTGCCGAGGGTGCGGGTTTTGTAG
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Coding sequence (CDS) from alignment at chr11:3714..5562+

>NO11G00020.1 ID=NO11G00020.1|Name=NO11G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr11:3714..5562+ (Nannochloropsis oceanica)
ATGCGACCTCTATTCCCTGCCATCCGCATGTCCTCGACCCTTATACTGCT
GCAAGTAGCCCTCCTTAGCCCTATGGCGCTCGCTTTTACAAACCCGGCTG
TGGTACCCCGCCGACGGCACCACATCAGGTCTACAATGAAAGTGGCCTCC
TCCTTTCCATCTTCCCCTCCTACTGTCCCTCCTTTCCGCTCGCACCCGTA
CGACAATTTACAACAGCAAGCATCTCTCTGGGGCGGCAACGGCCACTTTG
GTTACACCGCCGTGCTTATCGTGCCCACGGGCATCGGGGCATCTATCGGC
GGATACGCCGGCGACGCACTCCCCGTGGCACATGGCATTGCCTCAGTCGT
GGACACCTTGATTACCCACCCCAACGTCATGAATGCTGCCTCCCTCTACT
CCCCCCGCCCCAACATTCTCTACACGGAGGGCTTCGCGCTCGACGAGTTC
TGCGCAGGCATGTGGGGCCTTCGGCCCTTCCTCCCTCAGCAAGGCAGCCA
CAAGATCGGCCTGATCCTGGACGCGGGCATGGAAGAGGACATGCGGCTGA
GGCACGTACAGGTGGCGGACGGGGCGCGGGCGGCGCTCGGGGTAGATGTG
GGAGCTGTGGTGGTGACGGAGGAGCCAATGGAGGTCGGCCTGGGGCTAAT
GCCGGGGGGGGGGTCGTGGGGGAAGGTGGGCAAGCCGGGGACCTTGCTAA
GGGCGGCAAGGAGGCTGGTGGAGGAGGGTGGCTGCACGGCCTTGGCGGTA
GTGGCACGATTCCCCGAGGAGGAGGAGGAGGAGGAGGCGCTGCAGGCGTA
CCGGGAGGGACATGGCGTGGACTGCGTGGGGGGCGCCGAGGCCGTCATCT
CGCACCTGGTCACGAGGGAGCTGCGGGTGCCGTGTGCGCATGCCCCGGGC
CTGCCGCCGCTGGAGGTGGACGCGGGCATCAGCCCCAAGGCCTGCGGTGA
GGAGCTGGGGTATACATTTCTGCCCTGTGTGCTGGCCAACCTTAATAGGG
CACCCTTGCTGGTGGTTCCCCCGCCGTCCCCCGCGACCTCGGCCTCGTCC
TCCTTGTGGGAGGCCTCAACGGGGGGAGGGAAGGAGGGAGGAAGAGGGGG
GCCGAGGGGGGACGGGCGGACCCTGTGGCGTGAGGATGTATCGGCCGTGA
TTGCCCCGGCATCAGCCATCGGAGGGCCGGCGGTGCTAAGTCTACTGGGG
GGGGGAAGGGAGACGGGCCAGGCCACCTTACTTATTGCGGTGGAGGAAAA
CGAGACGCTGATGAAAACCACGCCGGAGGAGCTGCTCCCGCGGCAGATGG
AGGCGGGGAGGGTAGTGAGGGTCAAGACGTACCTGGAGGCCATGGGTTTA
TTGGCCGCACACAGGGCGGGCTTGAATCCGGCAGCACTGACCGCAACTGT
GCCGAGGGTGCGGGTTTTGTAG
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Synonyms
Publications