NO10G04110.1, NO10G04110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G04110.1
Unique NameNO10G04110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr10:1238447..1239843 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1238447..1239843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G04110.1 vs.
Match: EWM25619.1 (putative membrane permease [Nannochloropsis gaditana])

HSP 1 Score: 421.0 bits (1081), Expect = 3.200e-114
Identity = 229/310 (73.87%), Postives = 259/310 (83.55%), Query Frame = 0
Query:    4 SPSATAAPGSSRLLSLANFGAYILNIAATYVIGTTGTIGKTNSEVSAAYPTLFTPAGWAFAIWGLIFIMEGVFAIYQLLPSVRSTTAVQKGVGPWWILMVLLQLGWSFSFATESITLSMVFMLGIFLSLLALTLSLRKVLGPKPSLSQAICLVFPFSLNFGWITAAMLANANILAVYRDPDLLPSHVATAVSSCVVLGLAAVLGGFLLLDPVFCLVLVWAGTAVARELAEPVESIAASFPPSVTDGLSQAVFVLVGLAALCALHAAGKGCLARRA---TAAGGEGEGRKDEGSSASPAGMRTASQALLKP 311
            S     +P  SRLL  AN GAYILNI AT VIGT+G +GKTNSEVSAAYPTLFTPAG+AF+IWGLIF MEG FA+YQLLPSVRST A+QKGVGPWWILMVLLQLGWS SFATESI LSM FM+GIFLSLLALTLSLR+ L  +PSL+Q+ICL+ PFSLNFGWITAA+LANANI+AVYRD + L SH+ATAVSSCVVLGLAA+LGGF L+DP+FCLVLVWAGTA+A++L+ PV SI+ASFPP VT GLSQAVFVLVG AAL ALHAAG+  L RR       G E EG   +G + SPAG+R A+QALLKP
Sbjct:    3 SSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312          
The following BLAST results are available for this feature:
BLAST of NO10G04110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25619.13.200e-11473.87putative membrane permease [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G04110NO10G04110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G04110.1NO10G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G04110.1.cds1NO10G04110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04110.1.cds2NO10G04110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G04110.1.cds3NO10G04110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G04110.1 ID=NO10G04110.1|Name=NO10G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGCCATCGTCCCCTTCAGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCT
ATCCTTGGCCAACTTTGGCGCCTACATCCTGAACATTGCTGCAACTTACG
TGATTGGGACGACAGGCACAATCGGCAAGACCAATAGTGAAGTCTCGGCC
GCCTATCCCACGCTTTTCACCCCCGCTGGCTGGGCTTTTGCCATTTGGGG
CCTGATCTTCATCATGGAGGGTGTCTTTGCCATCTACCAGCTCCTACCTT
CCGTCCGCAGCACTACAGCCGTCCAAAAAGGTGTGGGGCCCTGGTGGATT
TTGATGGTGCTTCTCCAGCTGGGCTGGTCCTTCAGCTTTGCCACCGAGTC
CATCACCCTGTCCATGGTCTTCATGCTTGGTATCTTCCTCTCCCTCCTCG
CCCTTACCCTGTCCCTGCGCAAGGTCCTGGGCCCCAAGCCCTCTCTCTCC
CAGGCCATTTGCCTCGTTTTCCCCTTCTCCCTCAATTTCGGTTGGATCAC
GGCCGCCATGCTCGCCAACGCCAATATCTTGGCTGTGTACCGGGACCCCG
ACCTCCTCCCCTCCCACGTGGCCACAGCCGTCTCTTCTTGCGTCGTGCTA
GGACTTGCGGCCGTCCTGGGCGGCTTCCTCCTCCTCGACCCGGTTTTCTG
CCTCGTTTTGGTCTGGGCTGGCACGGCAGTTGCGAGGGAGCTGGCGGAAC
CTGTGGAGAGCATCGCAGCCTCCTTCCCCCCCTCTGTGACGGACGGGCTC
AGCCAGGCCGTCTTTGTCCTGGTGGGCTTGGCGGCTCTGTGTGCCCTCCA
TGCCGCGGGGAAAGGGTGCCTCGCCCGAAGGGCAACAGCAGCAGGAGGGG
AGGGGGAGGGAAGAAAGGACGAAGGGTCGTCGGCCTCGCCTGCGGGGATG
CGAACGGCATCTCAGGCGCTGCTCAAGCCGTAG
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protein sequence of NO10G04110.1

>NO10G04110.1-protein ID=NO10G04110.1-protein|Name=NO10G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPSSPSATAAPGSSRLLSLANFGAYILNIAATYVIGTTGTIGKTNSEVSA
AYPTLFTPAGWAFAIWGLIFIMEGVFAIYQLLPSVRSTTAVQKGVGPWWI
LMVLLQLGWSFSFATESITLSMVFMLGIFLSLLALTLSLRKVLGPKPSLS
QAICLVFPFSLNFGWITAAMLANANILAVYRDPDLLPSHVATAVSSCVVL
GLAAVLGGFLLLDPVFCLVLVWAGTAVARELAEPVESIAASFPPSVTDGL
SQAVFVLVGLAALCALHAAGKGCLARRATAAGGEGEGRKDEGSSASPAGM
RTASQALLKP*
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mRNA from alignment at chr10:1238447..1239843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G04110.1 ID=NO10G04110.1|Name=NO10G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp|location=Sequence derived from alignment at chr10:1238447..1239843- (Nannochloropsis oceanica)
ATGCCATCGTCCCCTTCAGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCT ATCCTTGGCCAACTTTGGCGCCTACATCCTGAACATTGCTGCAACTTACG TGATTGGGACGACAGGCACAATCGGCAAGACCAATAGTGAAGGTAAAAAT TGCTTTTCCCCGAGTGCTTCACACAGAACACTGGGAGAAGGGAGGGCGAT CCTTGTGCCATATGCCAGCGGGAATACCATGTGCTAGCCCTGGCACCTAC CATTTTAGCCTAACTCTGTTAATATCGTTAGATCTGCGTGCGCCTAGACA AGCCTGAGCAGATGTTTGGCACTGCCCTTTGGACCTTGCGGGATGAACCT TCCTGCCCCCTCTTTCCTCCCGCGCGGATGTCGCGTTCTTTCTCATTTTT CCTGTATGATTCACACTTATGAAACAGGTCCTTGCTGTCAAGCATGAAGC CATTCATTCTTTCTCCCTCCCATTCGCTCACTAATCTCCTACATCCCCCC TTTATCTCTTGAACTTAGTCTCGGCCGCCTATCCCACGCTTTTCACCCCC GCTGGCTGGGCTTTTGCCATTTGGGGCCTGATCTTCATCATGGAGGGTGT CTTTGCCATCTACCAGCTCCTACCTTCCGTCCGCAGCACTACAGTACGCC CCCCCCCTTCCCTCCCTGACTCCTTTTTTTTTCAGCCACATCCATTTCCC CTCTCTCCATTCCCCCACTCCCTTTACACAGGCCGTCCAAAAAGGTGTGG GGCCCTGGTGGATTTTGATGGTGCTTCTCCAGCTGGGCTGGTCCTTCAGC TTTGCCACCGAGTCCATCACCCTGTCCATGGTCTTCATGCTTGGTATCTT CCTCTCCCTCCTCGCCCTTACCCTGTCCCTGCGCAAGGTCCTGGGCCCCA AGCCCTCTCTCTCCCAGGCCATTTGCCTCGTTTTCCCCTTCTCCCTCAAT TTCGGTTGGATCACGGCCGCCATGCTCGCCAACGCCAATATCTTGGCTGT GTACCGGGACCCCGACCTCCTCCCCTCCCACGTGGCCACAGCCGTCTCTT CTTGCGTCGTGCTAGGACTTGCGGCCGTCCTGGGCGGCTTCCTCCTCCTC GACCCGGTTTTCTGCCTCGTTTTGGTCTGGGCTGGCACGGCAGTTGCGAG GGAGCTGGCGGAACCTGTGGAGAGCATCGCAGCCTCCTTCCCCCCCTCTG TGACGGACGGGCTCAGCCAGGCCGTCTTTGTCCTGGTGGGCTTGGCGGCT CTGTGTGCCCTCCATGCCGCGGGGAAAGGGTGCCTCGCCCGAAGGGCAAC AGCAGCAGGAGGGGAGGGGGAGGGAAGAAAGGACGAAGGGTCGTCGGCCT CGCCTGCGGGGATGCGAACGGCATCTCAGGCGCTGCTCAAGCCGTAG
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Coding sequence (CDS) from alignment at chr10:1238447..1239843-

>NO10G04110.1 ID=NO10G04110.1|Name=NO10G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr10:1238447..1239843- (Nannochloropsis oceanica)
ATGCCATCGTCCCCTTCAGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCT
ATCCTTGGCCAACTTTGGCGCCTACATCCTGAACATTGCTGCAACTTACG
TGATTGGGACGACAGGCACAATCGGCAAGACCAATAGTGAAGTCTCGGCC
GCCTATCCCACGCTTTTCACCCCCGCTGGCTGGGCTTTTGCCATTTGGGG
CCTGATCTTCATCATGGAGGGTGTCTTTGCCATCTACCAGCTCCTACCTT
CCGTCCGCAGCACTACAGCCGTCCAAAAAGGTGTGGGGCCCTGGTGGATT
TTGATGGTGCTTCTCCAGCTGGGCTGGTCCTTCAGCTTTGCCACCGAGTC
CATCACCCTGTCCATGGTCTTCATGCTTGGTATCTTCCTCTCCCTCCTCG
CCCTTACCCTGTCCCTGCGCAAGGTCCTGGGCCCCAAGCCCTCTCTCTCC
CAGGCCATTTGCCTCGTTTTCCCCTTCTCCCTCAATTTCGGTTGGATCAC
GGCCGCCATGCTCGCCAACGCCAATATCTTGGCTGTGTACCGGGACCCCG
ACCTCCTCCCCTCCCACGTGGCCACAGCCGTCTCTTCTTGCGTCGTGCTA
GGACTTGCGGCCGTCCTGGGCGGCTTCCTCCTCCTCGACCCGGTTTTCTG
CCTCGTTTTGGTCTGGGCTGGCACGGCAGTTGCGAGGGAGCTGGCGGAAC
CTGTGGAGAGCATCGCAGCCTCCTTCCCCCCCTCTGTGACGGACGGGCTC
AGCCAGGCCGTCTTTGTCCTGGTGGGCTTGGCGGCTCTGTGTGCCCTCCA
TGCCGCGGGGAAAGGGTGCCTCGCCCGAAGGGCAACAGCAGCAGGAGGGG
AGGGGGAGGGAAGAAAGGACGAAGGGTCGTCGGCCTCGCCTGCGGGGATG
CGAACGGCATCTCAGGCGCTGCTCAAGCCGTAG
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Synonyms
Publications