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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:1196972..1201195 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G04020.1 vs.
Match: CBN77749.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 509.6 bits (1311), Expect = 1.100e-140 Identity = 272/521 (52.21%), Postives = 349/521 (66.99%), Query Frame = 0
Query: 3 SSSSTASTSGGSVGDASAAAKYDAFVKWLLDNGARFPGLELREYEAEVRGVHAKEELEGDQVVVEIPLK---------------------------CLITVEMGKGTEIGKAVVASDLPLDAPKHIFLMLFVLTDRHNPTSFFKPYYDILPSSLSNMPIFWTQNELAYLQGSYLLTQIDERKRAIEADYAAIADVAPSLPSVCSVEDFKWARMCVCSRNFGLEVNRVRTAALVPYADMLNHYRPRETKWAFDNGRQAFTITTLQRIAPGAQVFDSYGQKCNHRFLLNYGFAVENNREADGFCPNEVPLDFALRETDPLYSRKLPCWSRDGQSKVKRLRLCVADNENMRAAFSLLRVMVANEEELVRMLGPGNMFKTARDITYPVSLRNEERVLQTLLAKLTDALSAYPTRLEDDQAALACQDDPSLRPFSNRRHALIQVRGEKEVLSAFRALCATALTLLEVSDAVFKEAVNGLYSESNFFTANYCSDILYRLRQEEQRRLGAAAAQRAERVNL-SKPTIV 496
+ ++ AS + + D AK AF +WLL+NGARFP LE+R Y+ EVRGVHA+ E++ D+V+VEIPLK CL+TVEMGK +G+AV+AS + DAPKHIFLMLF+LTD P +FF+PYYD+LP++LSNMPIFWT+ E+ LQGSYL+TQ++ER +AIE DY I D+ P V ++E+FKWARMCVCSRNFGL++N +RT+ALVPYADMLNHYRPRETKW +DN R FTITTL RI GAQV+DSYGQKCNHRFLLNYGFA+ENN+EA+GFCPNEVPL F L DPL +K W DG + +R+RLCV D + +R A S+LRV+VA+ E+ G M++T +D+ +P+S+RNE ++ LL T AL AYPT LE+D+AAL + L PFSNRRHALIQV GEK VL+ + L TAL L D E V+ + ++CS + + E+ R G A RA + + PTIV
Sbjct: 55 AGAAEASVAEVNPDDPDHDAKVVAFERWLLENGARFPRLEIRRYDPEVRGVHARGEIDPDEVIVEIPLKNKKQRRKRPTGWSLQKPEKDGSASWRRCLVTVEMGKALPVGQAVLASGVSFDAPKHIFLMLFILTDMRRPDTFFRPYYDLLPTTLSNMPIFWTEEEMRLLQGSYLVTQVEERNQAIEGDYGVICDLYPPFRDVATLEEFKWARMCVCSRNFGLDINGLRTSALVPYADMLNHYRPRETKWTYDNNRGGFTITTLHRILGGAQVYDSYGQKCNHRFLLNYGFAIENNQEANGFCPNEVPLLFRLDARDPLRQKKARFWRMDGPEQ-RRVRLCVGDTDAVRGALSMLRVIVADAAEM----GARYMYRTVKDVRFPLSVRNEVAAMERLLLLTTGALDAYPTTLEEDRAAL---KNGGLEPFSNRRHALIQVYGEKVVLAHYVDLAETALACLAAVDTT--ELVSRCRDKGKLI-RDHCSGPIKNI-YEQDRAKGLIAPNRAWGGQMTADPTIV 563
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G04020.1 ID=NO10G04020.1|Name=NO10G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
AGGTTTGCGGGTGGAAAAAGCTTCTTCACATTCCTCGCTCCTTCACCCGA
CGGCATCATACGTTCAGCGTTAAGCCCTGCTCTAGAGTTGGGGCTGCACG
CAGACAGAAAAAAGACAATGCAGTCCAGCAGTAGCACTGCCAGCACCAGC
GGCGGCAGTGTGGGCGACGCTTCCGCCGCTGCTAAGTACGATGCTTTTGT
CAAGTGGCTCTTGGATAATGGCGCTCGTTTCCCAGGGCTTGAGTTGCGGG
AATACGAGGCCGAAGTCCGCGGCGTGCACGCCAAGGAAGAGCTGGAAGGG
GACCAAGTGGTGGTGGAAATTCCTCTCAAGTGCCTCATTACCGTAGAGAT
GGGCAAAGGAACGGAGATCGGCAAGGCTGTCGTGGCCTCGGATTTGCCCT
TGGATGCGCCTAAGCACATCTTCCTCATGCTATTCGTGCTGACGGACCGA
CACAACCCCACCTCGTTTTTCAAGCCGTACTACGATATTTTGCCTTCCTC
CCTCTCCAATATGCCCATCTTCTGGACCCAGAACGAACTCGCCTACCTCC
AAGGCTCGTACCTCCTGACCCAGATCGACGAGCGGAAGCGGGCCATTGAG
GCTGACTACGCCGCCATCGCCGACGTCGCTCCCTCCCTCCCCTCCGTCTG
CTCCGTGGAGGACTTCAAATGGGCCAGGATGTGCGTGTGTTCGCGCAATT
TTGGCCTCGAGGTGAACAGGGTCAGGACGGCGGCCCTCGTGCCCTACGCA
GACATGCTCAACCACTACCGTCCTCGTGAGACCAAGTGGGCCTTTGACAA
CGGCCGTCAAGCATTCACCATCACCACGCTGCAGCGCATCGCACCGGGCG
CGCAGGTCTTTGACTCCTACGGACAGAAGTGCAACCACCGCTTTCTCCTC
AACTACGGGTTCGCCGTAGAGAACAACAGGGAGGCTGACGGCTTCTGTCC
CAACGAGGTGCCCCTGGACTTTGCCCTCCGTGAGACCGACCCTCTCTATA
GCCGAAAGCTGCCATGTTGGAGCCGCGACGGGCAGAGCAAGGTGAAGCGG
CTACGGCTCTGTGTCGCGGACAATGAGAATATGCGCGCGGCATTCTCCTT
GCTAAGAGTAATGGTGGCTAATGAGGAGGAGTTGGTGCGGATGCTGGGCC
CGGGAAACATGTTCAAAACGGCCCGGGACATCACCTACCCCGTCAGCCTC
CGCAACGAGGAACGAGTCCTGCAGACCCTCCTCGCCAAATTGACAGACGC
TCTGTCCGCCTACCCCACCCGCCTCGAAGATGACCAAGCAGCGTTGGCTT
GCCAGGACGATCCCTCCCTCCGTCCCTTCTCCAATAGGCGCCACGCCCTG
ATACAGGTGCGCGGCGAGAAGGAAGTGCTGTCAGCGTTCCGGGCCCTGTG
TGCCACTGCCTTGACGCTTTTGGAGGTCAGCGACGCGGTTTTCAAGGAGG
CGGTCAATGGCCTGTACAGCGAGAGCAACTTTTTTACCGCTAACTACTGC
TCGGACATCCTCTACCGGCTACGACAGGAGGAGCAACGCCGGTTAGGGGC
GGCAGCAGCGCAAAGAGCTGAAAGAGTGAATCTTTCCAAACCCACCATTG
TCTAAGGGTGAAAAGTAGGAGAACGGCCGGAAGCGGAAGAGGGAGAAAGA
GGATTGTACAATTTAAAGTGTTTACAAACCTTAAATCTGGCACATTATTG
CCGTGCGTGTGTGAGTGGGTGGCATATATGTGATGAGAGAGGAGCAAGTG
CGCCTAGCGGCATAAGGAAGGGAAGCGAATCAGACAAAGATAATACGCGA
GGGGGAAAACATTAGCAATCAACAGCAAATACCT back to topprotein sequence of NO10G04020.1 >NO10G04020.1-protein ID=NO10G04020.1-protein|Name=NO10G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MQSSSSTASTSGGSVGDASAAAKYDAFVKWLLDNGARFPGLELREYEAEV
RGVHAKEELEGDQVVVEIPLKCLITVEMGKGTEIGKAVVASDLPLDAPKH
IFLMLFVLTDRHNPTSFFKPYYDILPSSLSNMPIFWTQNELAYLQGSYLL
TQIDERKRAIEADYAAIADVAPSLPSVCSVEDFKWARMCVCSRNFGLEVN
RVRTAALVPYADMLNHYRPRETKWAFDNGRQAFTITTLQRIAPGAQVFDS
YGQKCNHRFLLNYGFAVENNREADGFCPNEVPLDFALRETDPLYSRKLPC
WSRDGQSKVKRLRLCVADNENMRAAFSLLRVMVANEEELVRMLGPGNMFK
TARDITYPVSLRNEERVLQTLLAKLTDALSAYPTRLEDDQAALACQDDPS
LRPFSNRRHALIQVRGEKEVLSAFRALCATALTLLEVSDAVFKEAVNGLY
SESNFFTANYCSDILYRLRQEEQRRLGAAAAQRAERVNLSKPTIV* back to topmRNA from alignment at chr10:1196972..1201195- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G04020.1 ID=NO10G04020.1|Name=NO10G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=4224bp|location=Sequence derived from alignment at chr10:1196972..1201195- (Nannochloropsis oceanica)
AGGTTTGCGGGTGGAAAAAGCTTCTTCACATTCCTCGCTCCTTCACCCGA
CGGCATCATACGTTCAGCGTTAAGCCCTGCTCTAGAGTTGGGGCTGCACG
CAGACAGAAAAAAGACAATGCAGTCCAGCAGTAGCACTGCCAGCACCAGC
GGCGGCAGTGTGGGCGGTGCGTGCGTGTGTAGATGAGGTTGAAGGGGGAG
ACAGAGGCAGATGGGCGAAAAAGGGGCAAGCGTGTTGCTTATGGATGTCC
CCATCTCCTCACCCTTACCAGCACCATAGTCCGGTCAAATACAGCGCCTC
AATGGCACGTTCAGCTTAGCATGTCATTTTTCTCCTTACAATCCCTCTAT
TCCTTTCCTTTGTCCCTTCCTTCCTCAGACGCTTCCGCCGCTGCTAAGTA
CGATGCTTTTGTCAAGTGGCTCTTGGATAATGGCGCTCGTTTCCCAGGGC
TTGAGTTGCGGGTGCGTGATGTGACGGGATGGGACGAGGGGATGAAGAGG
AACGAAGAGGGGAGGGGGTAGATACGAATGTCCGCCCATCGCACAAACTC
ATTCCTTCCCGCGTTGCTTGCTGTGCTCCCTCCCCTCTCCTCTTTCTTCC
CTCCTCCCTCCTGTCTACTCACTCCCAGGAATACGAGGCCGAAGTCCGCG
GCGTGCACGCCAAGGAAGAGCTGGAAGGGGACCAAGTGGTGGTGGAAATT
CCTCTCAAGTGCCTCATTACCGTAGAGATGGGCAAAGGAACGGAGATCGG
CAAGGCTGTCGTGGCCTCGGATTTGCCCTTGGATGCGCCTAAGCACATCT
TCCTCATGCTATTCGTGCTGACGGACCGACACAACCCCACCTCGTTTTTC
AAGGTAGGAAGGGGAGGGAGGGAGGGAGAAAAGGAGAGAAGAAGCGGTAG
ACCTGCGGGTTGCCATCCATCTGCGTGCGGACACGCCCCAAGTGGATGGG
TTTCGATGCTCTTTGTATGCCATGACCGACTTGAGCCCGACTCTGTTCCA
CGTGAAGTTGTCCTTCTCCCCCATCTCTCTCCTTCCCTTCCTCCATCCCT
TTCGTCCTTCTCCCAACCCCCTCTTTCCGTCGTCGCTTGGGTATTCACCT
TGTGAATGTCTTCCTTCTCTGACCCTCCCCCCCTTCTCCCCTTTCCTTCT
CCTCCCCTTCCTTCCATTCCTTTCTCCAGCCGTACTACGATATTTTGCCT
TCCTCCCTCTCCAATATGCCCATCTTCTGGACCCAGAACGAACTCGCCTA
CCTCCAAGGTAGGGAGGGAGGACGCGAGGGAGGGAGGGAGGACGCGGGTG
CGGGGGTGGGAGGGAAGGAGGGGGTCATGGTCTGATGGGAAGGAAGAAAG
CAGTGAGCAAGAGAGTAGCATTCCTCATCTCAAATCTGATCTATCCCTCC
CTCCCTCTTTCCCTTCCTTATTTCCTCCTTCCTTCCCCTTCCTGAAGGCT
CGTACCTCCTGACCCAGATCGACGAGCGGAAGCGGGCCATTGAGGCTGAC
TACGCCGCCATCGCCGACGTCGCTCCCTCCCTCCCCTCCGTCTGCTCCGT
GGAGGACTTCAAATGGGCCAGGATGTGCGTGTGTTCGCGCAATTTTGGCC
TCGAGGTGAACAGGGTCAGGACGGCGGCCCTCGTGCCCTACGCAGGTACA
CCATAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCT
CCCTCCTCCCCTTGTACTCTCCGCACCATTTGTGGACCGACCACTCCCTC
CAACCCTTTCTCTCTCCCTCTCTCCCTCTACCAGACATGCTCAACCACTA
CCGTCCTCGTGAGACCAAGTGGGCCTTTGACAACGGCCGTCAAGCATTCA
CCATCACCACGCTGCAGCGCATCGCACCGGGCGCGCAGGTAGACCATGTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCT
TCCTTCTTTCCCATACATGGCCTCTGACCCTCCGCACATCTTCTCCCCAC
TCGTTTTCCCTCCCTCCTTCCCTCCCTCCTCTCCTCCTACCAGGTCTTTG
ACTCCTACGGACAGAAGTGCAACCACCGCTTTCTCCTCAACTACGGGTTC
GCCGTAGAGAACAACAGGGAGGCTGACGGCTTCTGTCCCAACGAGGTGGG
GGGGGGAGAAAGGAAAGAAGGGATGAGAAAAGGGAGGGAGGGAGGGAGGG
AATCCACATGCTTACCCCAAGCCTTGGTCTTCACTCCCTCGCTCCCTCCC
TCCCTCCCTTCGCAGGTGCCCCTGGACTTTGCCCTCCGTGAGACCGACCC
TCTCTATAGCCGAAAGCTGCCATGTTGGAGCCGCGACGGGCAGAGCAAGG
TAGAGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAAAGG
GCCTTCACACACACCCCCTCACTTCCACTGCCTTAGTCTCTCGCAAGACC
TTACCACCCACCATCACCTTACCCCTTACTACGTCATCATGTCATCGTCC
TCTAACATATCACCATCACCTTACCCCTTATCACGTCATTATGTCACCGT
CCTCTAACATATCACCATCACCTTACCCCTAACCACAAGGTGAAGCGGCT
ACGGCTCTGTGTCGCGGACAATGAGAATATGCGCGCGGCATTCTCCTTGC
TAAGGTACCTCCCTCACTCCCTCCGTCCTTGCCTCCCTTTCTACCACTCT
CTTCTACTTCGACTTACCCATCACTCCCCCCCGTCGTCGACCTTCCTCTT
CTCCCTCCTCACTTCTCCTCTCTTCTCGTCCTCCCTCCCCCTCTCCCTCC
CCCCTCCTCCCAGAGTAATGGTGGCTAATGAGGAGGAGTTGGTGCGGATG
CTGGGCCCGGGAAACATGTTCAAAACGGCCCGGGACATCACCTACCCCGT
CAGGTGGGGAGGGAGGGAGGGAGGAAGGGATGGAGGGAGGGAGGGAAAGA
GATGCTTAAAGCACGGGGACGGCAGCTTTGTCTGCTGTCTCAAGAAGAGG
GGAGGAAGAGAGGGAGAGGCGGGAAGGATAAGAGAACAGGGCTGAAAGGT
GATCCGCTTCCGCACACTTACCCACTCTCCGTCCCTCTCACCCTCTGTCC
CTCTCACCCTCCTTCCCTCCCTCTCCCTCCAGCCTCCGCAACGAGGAACG
AGTCCTGCAGACCCTCCTCGCCAAATTGACAGACGCTCTGTCCGCCTACC
CCACCCGCCTCGAAGATGACCAAGCAGCGTTGGCTTGCCAGGACGATCCC
TCCCTCCGTCCCTTCTCCAATAGGCGCCACGCCCTGATACAGGTAGGGAG
GGCGGGTGGAAGGGAAGGAGAGAAGGAGGGGGATTACGAGACTGATGGGG
TAGAAAGAAGTTTTGCAGCGTCGTATCACTCACGTCTCCCTCATCCTTCC
CCCTCTCCTTCTTTCCCTCCTCCCGCCTTCAGGTGCGCGGCGAGAAGGAA
GTGCTGTCAGCGTTCCGGGCCCTGTGTGCCACTGCCTTGACGCTTTTGGA
GGTCAGCGACGCGGTTTTCAAGGTGAATCAGGGAGGGAGGGGAAAAGGCG
GGAAGGGAGACGTACCCACAGGTTGTTCAAGGTTCTTCTCGTTTCCTTGG
CTCATTGTCCAGTGCCTTCAGAGCAAGGAAAGAAAAGGTATCTCTTACAT
CTCGTCCCCCACCCTCCCTCCCGCCCTCCCTCTCCTTTCTTCTTCATTCC
TCTCTCATCCAGGAGGCGGTCAATGGCCTGTACAGCGAGAGCAACTTTTT
TACCGCTAACTACTGCTCGGACATCCTCTACCGGCTACGACAGGTAAGGA
CGAGGGAGGGAGGGAGGCAAGAGGGAAGGAGGACACGATCTCTAAGGACC
ATATTTCCAACTTTTATTTATCTCCCCTTCTCCTTCTTTGCCTTGTCGTC
TCCTTGTTGTCACCCAGGAGGAGCAACGCCGGTTAGGGGCGGCAGCAGCG
CAAAGAGCTGAAAGAGTGAATCTTTCCAAACCCACCATTGTCTAAGGGTG
AAAAGTAGGAGAACGGCCGGAAGCGGAAGAGGGAGAAAGAGGATTGTACA
ATTTAAAGTGTTTACAAACCTTAAATCTGGCACATTATTGCCGTGCGTGT
GTGAGTGGGTGGCATATATGTGATGAGAGAGGAGCAAGTGCGCCTAGCGG
CATAAGGAAGGGAAGCGAATCAGACAAAGATAATACGCGAGGGGGAAAAC
ATTAGCAATCAACAGCAAATACCT back to topCoding sequence (CDS) from alignment at chr10:1196972..1201195- >NO10G04020.1 ID=NO10G04020.1|Name=NO10G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr10:1196972..1201195- (Nannochloropsis oceanica)
ATGCAGTCCAGCAGTAGCACTGCCAGCACCAGCGGCGGCAGTGTGGGCGA
CGCTTCCGCCGCTGCTAAGTACGATGCTTTTGTCAAGTGGCTCTTGGATA
ATGGCGCTCGTTTCCCAGGGCTTGAGTTGCGGGAATACGAGGCCGAAGTC
CGCGGCGTGCACGCCAAGGAAGAGCTGGAAGGGGACCAAGTGGTGGTGGA
AATTCCTCTCAAGTGCCTCATTACCGTAGAGATGGGCAAAGGAACGGAGA
TCGGCAAGGCTGTCGTGGCCTCGGATTTGCCCTTGGATGCGCCTAAGCAC
ATCTTCCTCATGCTATTCGTGCTGACGGACCGACACAACCCCACCTCGTT
TTTCAAGCCGTACTACGATATTTTGCCTTCCTCCCTCTCCAATATGCCCA
TCTTCTGGACCCAGAACGAACTCGCCTACCTCCAAGGCTCGTACCTCCTG
ACCCAGATCGACGAGCGGAAGCGGGCCATTGAGGCTGACTACGCCGCCAT
CGCCGACGTCGCTCCCTCCCTCCCCTCCGTCTGCTCCGTGGAGGACTTCA
AATGGGCCAGGATGTGCGTGTGTTCGCGCAATTTTGGCCTCGAGGTGAAC
AGGGTCAGGACGGCGGCCCTCGTGCCCTACGCAGACATGCTCAACCACTA
CCGTCCTCGTGAGACCAAGTGGGCCTTTGACAACGGCCGTCAAGCATTCA
CCATCACCACGCTGCAGCGCATCGCACCGGGCGCGCAGGTCTTTGACTCC
TACGGACAGAAGTGCAACCACCGCTTTCTCCTCAACTACGGGTTCGCCGT
AGAGAACAACAGGGAGGCTGACGGCTTCTGTCCCAACGAGGTGCCCCTGG
ACTTTGCCCTCCGTGAGACCGACCCTCTCTATAGCCGAAAGCTGCCATGT
TGGAGCCGCGACGGGCAGAGCAAGGTGAAGCGGCTACGGCTCTGTGTCGC
GGACAATGAGAATATGCGCGCGGCATTCTCCTTGCTAAGAGTAATGGTGG
CTAATGAGGAGGAGTTGGTGCGGATGCTGGGCCCGGGAAACATGTTCAAA
ACGGCCCGGGACATCACCTACCCCGTCAGCCTCCGCAACGAGGAACGAGT
CCTGCAGACCCTCCTCGCCAAATTGACAGACGCTCTGTCCGCCTACCCCA
CCCGCCTCGAAGATGACCAAGCAGCGTTGGCTTGCCAGGACGATCCCTCC
CTCCGTCCCTTCTCCAATAGGCGCCACGCCCTGATACAGGTGCGCGGCGA
GAAGGAAGTGCTGTCAGCGTTCCGGGCCCTGTGTGCCACTGCCTTGACGC
TTTTGGAGGTCAGCGACGCGGTTTTCAAGGAGGCGGTCAATGGCCTGTAC
AGCGAGAGCAACTTTTTTACCGCTAACTACTGCTCGGACATCCTCTACCG
GCTACGACAGGAGGAGCAACGCCGGTTAGGGGCGGCAGCAGCGCAAAGAG
CTGAAAGAGTGAATCTTTCCAAACCCACCATTGTCTAA back to top
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