NO10G03900.1, NO10G03900.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03900.1
Unique Name	NO10G03900.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3612
Alignment location	chr10:1139831..1146752 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1139831..1146752 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO10G03900.1 vs.
Match: CBJ33718.1 (PHflX, plastid HflX GTPase [Ectocarpus siliculosus])

HSP 1 Score: 445.7 bits (1145), Expect = 2.800e-121
Identity = 253/499 (50.70%), Postives = 328/499 (65.73%), Query Frame = 0

Query:  227 FSVEESLTELSELVGTAGLEVAGSTFQKVFDFNRRTCLGTGKVSQIKAAMAGLDCKTVIIDEELSPSQQMNLENIFGNEKANIKVLDRTALILDIFAQHAKTKEGKLQVELALLMYRLPRLTRLWTHLERQSTGGGSTGSVGLRGPGESQLESDKREIRRKIRDLKKELLQLHRHRSLHRVRREKMGFPVVALVGYTNSGKSTLLNGLTQAGALAEDLLFATLDPTTRRLSLPGFQGSFPSILLTDTVGFIQKLPTQLIAAFRATLEEIYMADVLVHLVDASNPMWRKQKAAVDATLEDMALGHKPRIVLYNKMDALTEEQQLVWSEEVLEMMEENDKAQNERLKSATDRGEGTEEDEEEKDGLGMELAVAGSAHTGEGMIDLLKALDETLRSIMVSVEVLLPYSEASTLSQIHDRGSCDKVIYQSDGTFVAAKVPQDLAIRLLPFRVDRGSQSYNLVQEGEEIDWAALAKGRHYYKEKLERGEVTALSPSIDTSTPAS 726
            F++EES+ ELSEL GTAGLEVAGST+Q+V + N RT +GTGKV +IK+AM  L   TVI D+ELSP QQ +LE  FG E A IKVLDRTALILDIFAQHAKT+EG+LQV+LAL MYRLPRLT++WTHLERQ       G VGLRGPGE QLE D+R ++ KI  LKKEL  + RHR   R  R+K+G PVVALVGYTN+GKSTLLN LT+AG +AE++LFATLDPTTR++ L G +   P ++LTDTVGFIQKLPT L+AAFRATLEE+  ADV+VH+VD S+P   KQ++AV   L +M    KPR+ ++NK+D L EE+Q                             E    D EE+D    EL VA SA TGEG+ D +  L+E + +++  VE ++PYS    LS++H+ G+CD   Y   GT + A+VP +L  RL PF      ++  +       + AA  +  + +K+  ++   T+   S+D   P +
Sbjct:  365 FTLEESMAELSELAGTAGLEVAGSTYQRVLEPNPRTYIGTGKVKEIKSAMNQLGVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKMWTHLERQQ------GGVGLRGPGERQLEVDRRLLKDKIIALKKELSGVRRHRDFQRRGRKKLGLPVVALVGYTNAGKSTLLNTLTRAGVMAENMLFATLDPTTRKVKLSGLK-VHPEVMLTDTVGFIQKLPTNLVAAFRATLEEVVEADVIVHIVDVSSPSREKQESAVTGVLGEMKTSDKPRLTMWNKLDLLPEEEQ-----------------------------EQVRVDAEERD----ELTVAASAMTGEGLDDFVTCLEEAICALLFKVEAVVPYSRGDLLSRVHELGACDTEEYTDAGTLIQARVPAELLNRLEPFFTPEFKETSRVEASNSGAEEAAALREENTWKQIAKKRLKTS---SLDEEAPVA 820

The following BLAST results are available for this feature:

BLAST of NO10G03900.1 vs.

BLAST of NO10G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ33718.1	2.800e-121	50.70	PHflX, plastid HflX GTPase [Ectocarpus siliculosus...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G03900	NO10G03900	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03900.1	NO10G03900.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03900.1.cds1	NO10G03900.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds2	NO10G03900.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds3	NO10G03900.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds4	NO10G03900.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds5	NO10G03900.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds6	NO10G03900.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds7	NO10G03900.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds8	NO10G03900.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds9	NO10G03900.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds10	NO10G03900.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds11	NO10G03900.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds12	NO10G03900.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds13	NO10G03900.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds14	NO10G03900.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds15	NO10G03900.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds16	NO10G03900.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds17	NO10G03900.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds18	NO10G03900.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03900.1.cds19	NO10G03900.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:1139831..1146752+
coding sequence from alignment at chr10:1139831..1146752+

mRNA sequence

>NO10G03900.1 ID=NO10G03900.1|Name=NO10G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=3612bp
AGAGAAACCGCGGAAGCAGAAAAGCACATTCGTCGCGGAAAGGACGAAGT
CCTGTGTCAAGAATGTCAGACGCAAGCCATGTCCCTCCTCCTTCGCATTA
CATGCGTGGTGATGGGGTGATCATGTACCACACAGCGTGGTTATCATGGT
GGGGAACATTCAGTCGGAGGAGGCGCCGTTATAATGATGGGTGACAGAGA
TGTGCCGACTTGTCGACTCAGCATTTTCGATAGCGCGAACAACTTCAGAT
CTTGCTCCTGGTTACCTCGTTAGTTCCTGTCTTCAAAGCGGTTTACACAT
TACGCGGCTTCTCATCCACAACGCGGGGAGGACGGCGCGGTGGAGAGCGC
TGAGAATGCGAAGGGTCGTGTACGGCTTGTACTTGCCAACGCAGGACGTG
CCATCACCTTCATTTCAGGGCATCAGTTATCATTCACACCACCCCCATAC
ACAAACAACCGCAGACATTTACATCGTCGCGCATACACGGCATATTCGAG
TTTGCAATTCCCTCGTCTCCCTAGACCATCGCCATCGCTCGTCTTTTTTG
CCCTTACGACGCAGCGCCCTTCGTCATATTTAAGCTCCTTCCCTACCACC
TTGCTTCTGAAGGCAAGTCAAGCTGCAGGGACAGACGCACGGGAAGCACG
CATTCATATAAACTCAAGCACGAAACCCATGCCGCATCTCCACCTCCTTC
TTCTATGCTGCCCACTGCTCTCCCTCCTCGTCGACCACGTGGCTGACGCC
TTCCTCCTCCCCTCGTCCTCCCTACCTGCTTCCCGCCATCCCTCCCCCTC
CCTCGATACACCTATCACGACAAGCACGGCCCTCTACGCGCGGAAGAAGC
GAACCAAAGAAAAAGATTGGATGGAAGTCCTCAAGGAGTCCGGTGGGTTG
GAGGAGAAGGAAGAGGGCATCTGGCCTACTGCTCCTGCGCCGTGGGAAGC
TTCCTTTGTGGGCACTTCCCTGGACCCGCTCATGCTCGACCCTGATGACT
TCGACGAGGAGGAGTTAGGGATGATGGCCATGCTGGAGGAGGAGGAAAGC
GATGCCGAAGCCAAGGACGGGGAGGAGGAGGAGGAGGAGGAGGGGGAGGG
GTTTGTTGAAGAGCAGGATGTGGAGCTCTCTTTGGGATACATGGATTACA
GAGAGGACGACGAGGACGACTCGAGCGACGGCGGGGAGCAGGGGCGGCAA
GCCCGGAACCGTGCCGCTGCGAATTCATTGCAAGACAAAGTCATGGAGCG
AGCCGGGCGCTTTTATGAGCACTACAATGGGAGGGCGGCCAAGGAGAAGG
TGTATGTGGTGGGGATCGCGAAGAAGAAGAGTGCGGGGGAGATGGACACG
GACGCCTTTTCAGTGGAGGAGTCCTTGACGGAGCTGTCGGAGCTGGTGGG
CACGGCGGGGTTGGAGGTGGCGGGTTCGACGTTTCAGAAAGTGTTCGACT
TCAACCGACGGACGTGCCTGGGTACGGGCAAAGTTTCTCAGATTAAGGCA
GCCATGGCAGGGTTGGACTGCAAGACCGTCATAATCGACGAAGAGCTCAG
CCCGTCACAGCAGATGAACCTGGAAAATATCTTCGGGAACGAGAAGGCCA
ACATTAAAGTCCTCGATCGGACGGCCCTCATCCTTGACATCTTCGCACAG
CACGCCAAGACCAAGGAGGGCAAGCTCCAGGTGGAGCTGGCGTTGCTCAT
GTACCGCCTCCCGCGCCTGACCCGCCTTTGGACTCACTTGGAAAGACAGT
CCACCGGCGGTGGCTCCACGGGCTCCGTCGGTCTGCGCGGGCCGGGGGAG
TCTCAGCTCGAATCGGACAAACGAGAGATTCGGCGCAAGATCCGGGACCT
GAAGAAGGAGCTGCTGCAGCTTCACAGGCACCGCTCCCTCCACCGTGTGC
GACGGGAAAAAATGGGGTTTCCGGTGGTAGCTCTTGTGGGCTACACTAAC
AGCGGCAAATCCACGCTTCTTAACGGCCTGACTCAAGCGGGTGCCTTGGC
CGAAGACCTCCTCTTTGCCACTCTCGATCCCACCACCAGGCGCCTCTCCC
TCCCCGGCTTCCAGGGCTCGTTTCCCTCCATCCTCCTCACCGACACGGTC
GGCTTTATCCAGAAGCTCCCTACACAATTGATCGCTGCCTTTCGCGCCAC
CCTGGAGGAGATCTATATGGCGGACGTGCTGGTCCACCTGGTGGATGCCT
CAAATCCCATGTGGAGGAAGCAGAAGGCCGCCGTGGATGCCACCTTAGAG
GACATGGCCCTCGGGCACAAGCCTCGCATTGTCCTCTACAATAAGATGGA
TGCCCTCACCGAGGAACAGCAGCTGGTTTGGTCGGAGGAGGTTCTTGAGA
TGATGGAAGAGAACGATAAGGCCCAAAACGAGCGCCTGAAGAGTGCGACT
GATAGGGGGGAGGGGACGGAGGAGGACGAGGAGGAGAAGGACGGTCTAGG
GATGGAGCTGGCAGTGGCTGGTAGCGCCCACACCGGAGAAGGCATGATCG
ACCTCCTCAAGGCCTTGGACGAGACGCTCCGTTCTATCATGGTTTCCGTG
GAGGTTCTTCTGCCCTACTCGGAGGCGTCGACCCTCAGCCAGATCCATGA
CCGTGGCTCATGCGACAAAGTCATCTACCAGTCCGACGGGACCTTCGTGG
CGGCGAAAGTTCCGCAGGACCTGGCCATCCGCCTCCTTCCCTTCCGTGTG
GACCGCGGGTCCCAGTCGTACAATCTCGTCCAGGAAGGGGAAGAGATTGA
TTGGGCAGCTCTGGCCAAGGGCAGGCACTACTACAAGGAGAAGCTGGAGC
GAGGGGAGGTTACGGCACTGTCCCCCTCCATTGACACGTCCACCCCTGCT
TCCGCGGCGGCGTAAAGATTAAGGGGAAGAGGGAGGGAGGGAGGGAAGGA
GGGTGTAGAGTGTAATTTTATACGTTTAGACTCGCTGATGATTTTGAAAT
CCATTTGCTTCTAGCTTTACTTTTTCCGCTGTTGCAGCCCAGCAGCAGCA
GCAGCAGCAGCAACAACAACAGCAGCAACAGCAATAAAAATGACCACAAT
GACGACGCCGGCAGCAGCAGCAGTAGCTACAACAGCAGTGGCAACGGCAG
CAGCAGCAGCTACATCAAGTACAGCAAGATTAAAAAATATTGAAACGCAA
AGAATGTGAATACCTACTACGCATGCAGACAGTCGGTCAGGTGGACGGTG
GGGTGGAAATTAAAGATGGAAATAATGAGAGGACGCGAGGGAGTTTGTGC
ATAAAGATATGGAGGAAGTAACAAGAAAACAGGAAGGGAAAGAAAGTTAG
GGGAATTGGCGGGAGTGTCTAAATGGTGATGTTAATGAGGTGTTCTCTCC
GTGGGATCGTAGATCCTGGCTTGAATCCGCCCTAACGTGGAGGTGAGAGT
CACGAGGGAGGAAGAAAGCAGCCACCATTTAATGGTAGAAAGAGGGGTAG
AGGGGAGGACAGGAGTCAGATAAGAAGCGGACCTTTAATCGATAAGATGT
ACTTTTACTGGAGTCAATTTAGTATTAAGACTTTCAACAAAGAAAGGTAG
AACGTTTCACGTAACCCTAAAAAAGAAAAAGCGACAATGGTCAGCAAGCA
CCGATATAAGGA

protein sequence of NO10G03900.1

>NO10G03900.1-protein ID=NO10G03900.1-protein|Name=NO10G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=729bp
MPHLHLLLLCCPLLSLLVDHVADAFLLPSSSLPASRHPSPSLDTPITTST
ALYARKKRTKEKDWMEVLKESGGLEEKEEGIWPTAPAPWEASFVGTSLDP
LMLDPDDFDEEELGMMAMLEEEESDAEAKDGEEEEEEEGEGFVEEQDVEL
SLGYMDYREDDEDDSSDGGEQGRQARNRAAANSLQDKVMERAGRFYEHYN
GRAAKEKVYVVGIAKKKSAGEMDTDAFSVEESLTELSELVGTAGLEVAGS
TFQKVFDFNRRTCLGTGKVSQIKAAMAGLDCKTVIIDEELSPSQQMNLEN
IFGNEKANIKVLDRTALILDIFAQHAKTKEGKLQVELALLMYRLPRLTRL
WTHLERQSTGGGSTGSVGLRGPGESQLESDKREIRRKIRDLKKELLQLHR
HRSLHRVRREKMGFPVVALVGYTNSGKSTLLNGLTQAGALAEDLLFATLD
PTTRRLSLPGFQGSFPSILLTDTVGFIQKLPTQLIAAFRATLEEIYMADV
LVHLVDASNPMWRKQKAAVDATLEDMALGHKPRIVLYNKMDALTEEQQLV
WSEEVLEMMEENDKAQNERLKSATDRGEGTEEDEEEKDGLGMELAVAGSA
HTGEGMIDLLKALDETLRSIMVSVEVLLPYSEASTLSQIHDRGSCDKVIY
QSDGTFVAAKVPQDLAIRLLPFRVDRGSQSYNLVQEGEEIDWAALAKGRH
YYKEKLERGEVTALSPSIDTSTPASAAA*

mRNA from alignment at chr10:1139831..1146752+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G03900.1 ID=NO10G03900.1|Name=NO10G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=6922bp|location=Sequence derived from alignment at chr10:1139831..1146752+ (Nannochloropsis oceanica)
AGAGAAACCGCGGAAGCAGAAAAGCACATTCGTCGCGGAAAGGACGAAGT
CCTGTGTCAAGAATGTCAGACGCAAGCCATGTCCCTCCTCCTTCGCATTA
CATGCGTGGTGATGGGGTGATCATGTACCACACAGCGTGGTTATCATGGT
GGGGAACATTCAGTCGGAGGAGGCGCCGTTATAATGATGGGTGACAGAGA
TGTGCCGACTTGTCGACTCAGCATTTTCGATAGCGCGAACAACTTCAGAT
CTTGCTCCTGGTTACCTCGTTAGTTCCTGTCTTCAAAGCGGTTTACACAT
TACGCGGCTTCTCATCCACAACGCGGGGAGGACGGCGCGGTGGAGAGCGC
TGAGAATGCGAAGGGTCGTGTACGGCTTGTACTTGCCAACGCAGGACGTG
CCATCACCTTCATTTCAGGGCATCAGTTATCATTCACACCACCCCCATAC
ACAAACAACCGCAGACATTTACATCGTCGCGCATACACGGCATATTCGAG
TTTGCAATTCCCTCGTCTCCCTAGACCATCGCCATCGCTCGTCTTTTTTG
CCCTTACGACGCAGCGCCCTTCGTCATATTTAAGCTCCTTCCCTACCACC
TTGCTTCTGAAGGCAAGTCAAGCTGCAGGGACAGACGCACGGGAAGCACG
CATTCATATAAACTCAAGCAGTACGTAAATTCAACCTAGCTTCCGTCGAG
TGTCGTAGGTAGATCGGACGACGGCTTTTGGTCTCTTCTGTGCCTCCTTG
CCGCGACAGGCGGCGCATCTTACAACATTCTTCCTTTCATCCGTCCCACC
TCCTCCCTGTTTCCACCCCCCTCAGCGAAACCCATGCCGCATCTCCACCT
CCTTCTTCTATGCTGCCCACTGCTCTCCCTCCTCGTCGACCACGTGGCTG
ACGCCTTCCTCCTCCCCTCGTCCTCCCTACCTGCTTCCCGCCATCCCTCC
CCCTCCCTCGATACACCTATCACGACAAGCACGGCCCTCTACGCGCGGAA
GAAGCGAACCAAAGAAAAAGATTGGTACTGAAGATGGAATTGGAGAGAGA
AAGGAGGAGGGGAAAAAGTAGAGGATTTCCTAAAAAATCGATTTCTACCA
ACTTGTTCATGCATCCGCTCACCCTCCCTCCCTCCTTCCCTCCCTCCCTC
CCTCGACCCACACCTCCCCTTCAACGTAGGATGGAAGTCCTCAAGGAGTC
CGGTGGGTTGGAGGAGAAGGAAGAGGGCATCTGGCCTACTGCTCCTGCGC
CGTGGGAAGCTTCCTTTGTGGGCACTTCCCTGGACCCGCTCATGCTCGAC
CCTGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGTTGG
AGGGAATGGAAGAAAAGATGCTTACTCACGTGATCATCTTTCTCATTATT
GCTTCAGATGACTTCGACGAGGAGGAGTTAGGGATGATGGCCATGCTGGA
GGAGGTCAGGAGGGAGGGAGGGAGGTCTGGAGGGAGGGAAGGGATAAGAC
ACATTTCTTCAAATCTTGTTTTCTTACCCATCGTATTGGCATGATGTGCT
CTATGAATTAAAGTCTCAAATATTCAAATATTCAAACATTCAAACATTCA
AACAGGAGGAAAGCGATGCCGAAGCCAAGGACGGGGAGGAGGAGGAGGAG
GAGGAGGGGGAGGGGTTTGTTGAAGAGCAGGATGTGGAGCTCTCTTTGGG
ATACATGGATTACAGAGAGGACGACGAGGTGGGTAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACCTCGAAAGTCAT
GACTCGCTGTTTTCCTCCTTGTAATTCAAAATGATTGACAGCCAACCCCC
TACCAACCACCAACAGGACGACTCGAGCGACGGCGGGGAGCAGGGGCGGC
AAGCCCGGAACCGTGCCGCTGCGAATTCATTGCAAGACAAAGTCATGGAG
CGAGCCGGGCGCTTTTATGAGCACTACAATGGGAGGTAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGGTGTATGAGATTGTGTACCCGTGAAT
GGGCATCCATGTATTGACACCCATCCCTCTTTCCCGTCCTCCCTCCCGTC
CTCCCTCCCTCCCGTCCTCCCTCCCTCCCTCCCTCCCTTAGGGCGGCCAA
GGAGAAGGTGTATGTGGTGGGGATCGCGAAGAAGAAGAGTGCGGGGGAGA
TGGACACGGACGCCTTTTCAGTGGAGGAGTCCTTGACGGAGCTGTCGGAG
CTGGTGGGCACGGCGGGGTTGGAGGTGGCGGGTTCGACGTTTCAGAAAGT
ACGGGGAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAAGAGGG
ACGGGTACTGATGTGACGAAGTTTTGGATAGGATGTCTGGGTTGGAATGG
AGGGGGCGAATAGGGAGATAGAGGGGGGCAGAGGGGCTTGGATTAGATTA
CATCAGATCAGATTAGGTTTCAATTTGTTTAGAATCAAATGAGATTAGGT
CAGGCCCTCCTCCCTCCCTCCTCTGGTCTAGGGTACTAACCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCTTCCTCCCTCCCTCGTC
CAGGTGTTCGACTTCAACCGACGGACGTGCCTGGGTACGGGCAAAGTTTC
TCAGATTAAGGCAGCCATGGCAGGGTTGGACTGCAAGACCGTCATAATCG
ACGAAGAGCTCAGCCCGTCACAGCAGGTAGAAGGGGGGGGAGGGAAGGAG
GGAAAAAGGAAGGGAGGGAGGGACGGAAAAGGAGGGAAGGGCTGATAGAT
CGTTGCGCCGACTCTCGCCTTTGACACCTGCGCTCCTTCCCTCTCTCCCT
CCTTCCCTCCCTCCTTCCCTTCCTCCCTCGGCAGATGAACCTGGAAAATA
TCTTCGGGAACGAGAAGGCCAACATTAAAGTCCTCGATCGGACGGCCCTC
ATCCTTGACATCTTCGCACAGCACGCCAAGACCAAGGAGGGCAAGCTCCA
GGTCCGTCTTGGGGTGTTTCTCGTGCCGCCCCTTCCCCTCCTTCCTTCCC
TTCCCCTGCTTCCTCGCTTCTCCTTTTTTTTCGTGGATTTTGACCCGCGT
TTTCGTGGATCGTCCCCTCCCTTCCTCCCTCCTCCCCTCCCTCCCATCAT
TCGTCCCTCCCTCCCTCCCTCCCTCCTTTAGGTGGAGCTGGCGTTGCTCA
TGTACCGCCTCCCGCGCCTGACCCGCCTTTGGACTCACTTGGAAAGACAG
TCCACCGGCGGTGGTGAGGAGGGAGGGAAAGAGGGAGGGAAAGAAGGGGT
GGAGAAAGCGAGGAAGGGAGGGAAGGAGGGAGAATTTCAGCACAGATAAA
TACAGTGAATATATTCGAAGTCGATTAAATTCCTCACCGTCCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCCC
TTCCTTCGTGCAGGCTCCACGGGCTCCGTCGGTCTGCGCGGGCCGGGGGA
GTCTCAGCTCGAATCGGACAAACGAGAGATTCGGCGCAAGATCCGGGACC
TGAAGAAGGAGCTGCTGCAGCTTCACAGGCACCGCTCCCTCCACCGTGTG
CGACGGGAAAAAATGGTACCTCCCTCCCTCCCTCCCTCCTTTTCCCGCCG
TCGTCTCTCCGAGCCACCATTGGCATCCTGTGGCTTACCCAGGCCCCTCC
TCTCTTCGCCCCTTCCCCCCTTCCCTCCTCGCCTCCCTCCCTCCTCATTT
GCAGGGGTTTCCGGTGGTAGCTCTTGTGGGCTACACTAACAGCGGCAAAT
CCACGCTTCTTAACGGCCTGACTCAAGCGGGTGCCTTGGCCGAAGACCTC
CTCTTTGCCACTCTCGATCCCACCACCAGGTCGGTTACAGCACGCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCCATTCCTCCCTGTTGTCTTATCC
CCCCCACTTTTTTGCTTCCTCCCTGTCGATTTCCATCTCCTGATCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCAGGCGCCTCTCCCTCCCCGGCTTCCA
GGGCTCGTTTCCCTCCATCCTCCTCACCGACACGGTCGGCTTTATCCAGA
AGCTCCCTACACAATTGATCGCTGCCTTTCGCGCCACCCTGGAGGTGAAG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTATCGAATGAGAGACA
ACAGTCAAGTCAAGTGCAGAATGTGACGACCCCCTCACACCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCAGGAGATC
TATATGGCGGACGTGCTGGTCCACCTGGTGGATGCCTCAAATCCCATGTG
GAGGAAGCAGAAGGCCGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGAGCGCACGCCCCGCTATTTGCACGAACATTATACTCAAACCCG
TGTCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCAGCCGTGGAT
GCCACCTTAGAGGACATGGCCCTCGGGCACAAGCCTCGCATTGTCCTCTA
CAATAAGATGGATGCCCTCACCGAGGTACGAGTGCCCTCTCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTACAATCTGCCCAA
TCTGCTCCTCCTTCTTCCTTTACTTCCTGGCCCTCCCTTGCCACCGTGCT
CCCTCGCTCCCTCCCCCTCTACGTCTCGTGATGATCCGCAACTGCATTTC
TTCATCCAATCCTCATCATAACTCTCCTTCCCTCCTTCCCTCCCTCCTTT
CCAGGAACAGCAGCTGGTTTGGTCGGAGGAGGTTCTTGAGATGATGGAAG
AGAACGATAAGGCCCAAAACGAGCGCCTGAAGAGGTAAGGAGGGAGGGAG
GGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGGTCGTTTGGTTC
GTCCCTCTTGATTACTACACCAAATATATGAATATGTATCAATATGTATA
TATATACGTTATATAATTACATGTATGTTATTAAATTCATGTTGCACACA
CACGTTTCCACGCTTTATTATGATGATAGTGCGACTGATAGGGGGGAGGG
GACGGAGGAGGACGAGGAGGAGAAGGACGGTCTAGGGATGGAGCTGGCAG
TGGCTGGTAGCGCCCACACCGGAGAAGGTGAGTTTACTCAACTTCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCATTCGCTGTTCACCTGCCTTT
TCTCCTCCCCTCCCCCCCTCTTTGCGTTGTCCCCTGCTCACCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCTTCCTCAGGCATGATCGACCTCCTCAAGGC
CTTGGACGAGACGCTCCGTTCTATCATGGTTTCCGTGGAGGTTCTTCTGC
CCTACTCGGAGGCGTCGACCCTCAGCCAGGTACGCCCTCCCTCCCTCCCT
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCAGGCGAAGGCATT
ATGTCTCCCTACTCCCTCGCGGCGGGTCATCGCTGTGAGGGATAGCCCTC
CCTCCTTCCTTCCTTCCCTCCACCCCTCTAATCCATCCATTCTCCCTCTT
ATCTTTTTCCTTCTTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCC
TCGCCCCAGATCCATGACCGTGGCTCATGCGACAAAGTCATCTACCAGTC
CGACGGGACCTTCGTGGCGGCGAAAGTTCCGCAGGTAGGAAGGAAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGAGAGCGGCAATAGCACGCACGGAGTTG
TTGTCGGTGCTTCTATGAATGGAAACATCCAGACTCGGGAAAGAAGGAAG
GCCAAAAATTGGCCCTTCGCTTTGTATCAACCCTCTCCCTCCCTCCCCCC
CTCCCTCCCTCCCTCCCGTCCTGGCAGGACCTGGCCATCCGCCTCCTTCC
CTTCCGTGTGGACCGCGGGTCCCAGTCGTACAATCTCGTCCAGGAAGGGG
AAGAGATTGATTGGGCAGCTCTGGCCAAGGGCAGGCACTACTACAAGGAG
AAGCTGGAGCGAGGGGAGGTTACGGCACTGTCCCCCTCCATTGACACGTC
CACCCCTGCTTCCGCGGCGGCGTAAAGATTAAGGGGAAGAGGGAGGGAGG
GAGGGAAGGAGGGTGTAGAGTGTAATTTTATACGTTTAGACTCGCTGATG
ATTTTGAAATCCATTTGCTTCTAGCTTTACTTTTTCCGCTGTTGCAGCCC
AGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAACAGCAATAAAAA
TGACCACAATGACGACGCCGGCAGCAGCAGCAGTAGCTACAACAGCAGTG
GCAACGGCAGCAGCAGCAGCTACATCAAGTACAGCAAGATTAAAAAATAT
TGAAACGCAAAGAATGTGAATACCTACTACGCATGCAGACAGTCGGTCAG
GTGGACGGTGGGGTGGAAATTAAAGATGGAAATAATGAGAGGACGCGAGG
GAGTTTGTGCATAAAGATATGGAGGAAGTAACAAGAAAACAGGAAGGGAA
AGAAAGTTAGGGGAATTGGCGGGAGTGTCTAAATGGTGATGTTAATGAGG
TGTTCTCTCCGTGGGATCGTAGATCCTGGCTTGAATCCGCCCTAACGTGG
AGGTGAGAGTCACGAGGGAGGAAGAAAGCAGCCACCATTTAATGGTAGAA
AGAGGGGTAGAGGGGAGGACAGGAGTCAGATAAGAAGCGGACCTTTAATC
GATAAGATGTACTTTTACTGGAGTCAATTTAGTATTAAGACTTTCAACAA
AGAAAGGTAGAACGTTTCACGTAACCCTAAAAAAGAAAAAGCGACAATGG
TCAGCAAGCACCGATATAAGGA

Coding sequence (CDS) from alignment at chr10:1139831..1146752+

>NO10G03900.1 ID=NO10G03900.1|Name=NO10G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=2187bp|location=Sequence derived from alignment at chr10:1139831..1146752+ (Nannochloropsis oceanica)
ATGCCGCATCTCCACCTCCTTCTTCTATGCTGCCCACTGCTCTCCCTCCT
CGTCGACCACGTGGCTGACGCCTTCCTCCTCCCCTCGTCCTCCCTACCTG
CTTCCCGCCATCCCTCCCCCTCCCTCGATACACCTATCACGACAAGCACG
GCCCTCTACGCGCGGAAGAAGCGAACCAAAGAAAAAGATTGGATGGAAGT
CCTCAAGGAGTCCGGTGGGTTGGAGGAGAAGGAAGAGGGCATCTGGCCTA
CTGCTCCTGCGCCGTGGGAAGCTTCCTTTGTGGGCACTTCCCTGGACCCG
CTCATGCTCGACCCTGATGACTTCGACGAGGAGGAGTTAGGGATGATGGC
CATGCTGGAGGAGGAGGAAAGCGATGCCGAAGCCAAGGACGGGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGGGTTTGTTGAAGAGCAGGATGTGGAGCTC
TCTTTGGGATACATGGATTACAGAGAGGACGACGAGGACGACTCGAGCGA
CGGCGGGGAGCAGGGGCGGCAAGCCCGGAACCGTGCCGCTGCGAATTCAT
TGCAAGACAAAGTCATGGAGCGAGCCGGGCGCTTTTATGAGCACTACAAT
GGGAGGGCGGCCAAGGAGAAGGTGTATGTGGTGGGGATCGCGAAGAAGAA
GAGTGCGGGGGAGATGGACACGGACGCCTTTTCAGTGGAGGAGTCCTTGA
CGGAGCTGTCGGAGCTGGTGGGCACGGCGGGGTTGGAGGTGGCGGGTTCG
ACGTTTCAGAAAGTGTTCGACTTCAACCGACGGACGTGCCTGGGTACGGG
CAAAGTTTCTCAGATTAAGGCAGCCATGGCAGGGTTGGACTGCAAGACCG
TCATAATCGACGAAGAGCTCAGCCCGTCACAGCAGATGAACCTGGAAAAT
ATCTTCGGGAACGAGAAGGCCAACATTAAAGTCCTCGATCGGACGGCCCT
CATCCTTGACATCTTCGCACAGCACGCCAAGACCAAGGAGGGCAAGCTCC
AGGTGGAGCTGGCGTTGCTCATGTACCGCCTCCCGCGCCTGACCCGCCTT
TGGACTCACTTGGAAAGACAGTCCACCGGCGGTGGCTCCACGGGCTCCGT
CGGTCTGCGCGGGCCGGGGGAGTCTCAGCTCGAATCGGACAAACGAGAGA
TTCGGCGCAAGATCCGGGACCTGAAGAAGGAGCTGCTGCAGCTTCACAGG
CACCGCTCCCTCCACCGTGTGCGACGGGAAAAAATGGGGTTTCCGGTGGT
AGCTCTTGTGGGCTACACTAACAGCGGCAAATCCACGCTTCTTAACGGCC
TGACTCAAGCGGGTGCCTTGGCCGAAGACCTCCTCTTTGCCACTCTCGAT
CCCACCACCAGGCGCCTCTCCCTCCCCGGCTTCCAGGGCTCGTTTCCCTC
CATCCTCCTCACCGACACGGTCGGCTTTATCCAGAAGCTCCCTACACAAT
TGATCGCTGCCTTTCGCGCCACCCTGGAGGAGATCTATATGGCGGACGTG
CTGGTCCACCTGGTGGATGCCTCAAATCCCATGTGGAGGAAGCAGAAGGC
CGCCGTGGATGCCACCTTAGAGGACATGGCCCTCGGGCACAAGCCTCGCA
TTGTCCTCTACAATAAGATGGATGCCCTCACCGAGGAACAGCAGCTGGTT
TGGTCGGAGGAGGTTCTTGAGATGATGGAAGAGAACGATAAGGCCCAAAA
CGAGCGCCTGAAGAGTGCGACTGATAGGGGGGAGGGGACGGAGGAGGACG
AGGAGGAGAAGGACGGTCTAGGGATGGAGCTGGCAGTGGCTGGTAGCGCC
CACACCGGAGAAGGCATGATCGACCTCCTCAAGGCCTTGGACGAGACGCT
CCGTTCTATCATGGTTTCCGTGGAGGTTCTTCTGCCCTACTCGGAGGCGT
CGACCCTCAGCCAGATCCATGACCGTGGCTCATGCGACAAAGTCATCTAC
CAGTCCGACGGGACCTTCGTGGCGGCGAAAGTTCCGCAGGACCTGGCCAT
CCGCCTCCTTCCCTTCCGTGTGGACCGCGGGTCCCAGTCGTACAATCTCG
TCCAGGAAGGGGAAGAGATTGATTGGGCAGCTCTGGCCAAGGGCAGGCAC
TACTACAAGGAGAAGCTGGAGCGAGGGGAGGTTACGGCACTGTCCCCCTC
CATTGACACGTCCACCCCTGCTTCCGCGGCGGCGTAA

Synonyms

Publications