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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:1100213..1102539 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03800.1 vs.
Match: EWM25575.1 (GPI mannosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 496.5 bits (1277), Expect = 1.300e-136 Identity = 271/406 (66.75%), Postives = 314/406 (77.34%), Query Frame = 0
Query: 48 AAFVTEISLLDLLLLAVILLYLGLCPYSKVEESFNMQATHDLLFLSPFAPSSLASYDHLSFPGVVPRTFWGPILLALPIHLLLFPLLSLLPSPLHPTTKHPFQLIVRGLLALYLWIAFLVFRQAVTWRFGRRTGQCLLLLTLSQFHLPFYLSRTLPNTFALAFVLLSYACLLRRSFTPALLLLALATALFRCDIIVLAAPLLLLLVLLRHLSFSRLLVLGPAFGLVGILLSVVIDSHFWGRGREGGSS---WVWPEGMVLFFNTVENKSREWGTHPWHWYASSALPRALLASPLLWPFCLLPPRRGGREGGRAGGKGRA------KSGMILTLPLPRSLPLLELDLEPFLLLFLPIAAYLSLYSLLPHKELRFIFPALPVLNLCAAVGWARLSERGEEGRKGKGGK 445
A+F+ I+ LDLLLLA+IL Y+ LCPY+KVEESFN QATHD+LFL F PSSLA+YDH SFPG VPRTFWGP+LLALP+HL+L LLP L P TK P QL VR +LAL+LW A L FRQA T+RFG RTGQCLLLLTLSQFHLPFY+SRTLPNTFAL FVLL+YA LL R+ T L LA ATALFRCD+IVLA PLLLLL+L RHL S+LL+LG FG GI++SV++DS+FW GRE SS +WPEG+VLFFNTVEN+S EWG PWHWY SSALPR+LL SPLLWP+C L R+ R G G KG + G+ +++PLP L LDLEPFLLLFLP+A YL+LYS LPHKELRFIFPALP+LNLCAA+GWARL ER E GR+G G+
Sbjct: 2 ASFLGNITFLDLLLLAIILSYIWLCPYNKVEESFNTQATHDILFLPAFPPSSLAAYDHRSFPGAVPRTFWGPLLLALPLHLVL----PLLPPSLRPATKLPVQLGVRVVLALFLWAALLRFRQAATFRFGPRTGQCLLLLTLSQFHLPFYMSRTLPNTFALGFVLLAYASLLYRAPTRCLFYLAGATALFRCDVIVLALPLLLLLLLRRHLKLSQLLLLGALFGGTGIVVSVLLDSYFWRAGREEKSSAFPLLWPEGVVLFFNTVENRSIEWGAAPWHWYVSSALPRSLLTSPLLWPYCFLARRKERRGTGVEGAKGESLDEADKDRGVPVSVPLPFLPQPLRLDLEPFLLLFLPVALYLALYSFLPHKELRFIFPALPILNLCAAIGWARLEER-EGGRRGAMGQ 402
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03800.1 ID=NO10G03800.1|Name=NO10G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp
ACAGGGCTAGGATAGGATGCCCCAGTGTGACTCCTGAGACGCTTTGACGC
AGTCAATCGCTAAAAAAACAACTTTGTACGTACGTCGTTCAGTCATGCCT
CCTCGCCTCCGAAGCAACACCAAGAGCCGCGGCGACAGCACCTGTCCTCC
TTCTCCTGATAGCAGTAGAAAAGATCTAATGCCACAAGTTAAGGCACCGA
GACAACGACCGCGTGGGGCAGCAAGGGCAGCATTTGCGGCGTTCGTGACC
GAAATCTCCTTACTTGATCTGCTCCTCCTGGCAGTCATTCTTCTCTATCT
CGGCCTCTGCCCCTACAGCAAGGTGGAAGAAAGCTTCAATATGCAAGCTA
CACATGACCTTCTCTTCCTTTCCCCTTTCGCCCCGTCCTCCCTCGCGTCC
TACGATCACCTCTCCTTCCCCGGCGTCGTCCCTCGCACCTTCTGGGGCCC
CATCCTCCTCGCCCTCCCCATCCATCTCCTCCTCTTCCCCCTCCTCTCTC
TCCTCCCATCCCCTCTCCACCCTACGACCAAACATCCCTTTCAGCTCATT
GTTCGCGGCCTCCTCGCCCTCTACCTCTGGATCGCCTTCCTCGTCTTCCG
CCAAGCCGTTACCTGGCGTTTCGGTCGTCGCACTGGACAATGCCTCCTCC
TCCTCACCCTCTCCCAGTTCCATCTCCCGTTCTATCTCTCCCGCACCCTC
CCCAACACTTTTGCGCTGGCCTTCGTCCTCCTGTCGTACGCTTGTCTCCT
CCGGCGCTCCTTCACTCCCGCCCTCCTCCTCCTCGCTCTGGCCACTGCTC
TCTTCCGTTGCGACATCATTGTACTCGCCGCGCCCCTCCTCCTCCTCCTC
GTCCTCCTCCGACACCTCTCCTTTTCCCGGCTCCTTGTCTTGGGTCCCGC
CTTTGGCCTGGTGGGTATACTTTTAAGCGTCGTGATCGACTCCCATTTCT
GGGGACGGGGGAGGGAGGGAGGAAGCAGCTGGGTGTGGCCTGAGGGCATG
GTTCTGTTTTTTAATACCGTGGAGAACAAGTCAAGGGAGTGGGGGACTCA
TCCCTGGCACTGGTATGCCTCGTCTGCCCTGCCTCGAGCCTTGCTTGCCT
CTCCGTTGCTGTGGCCATTCTGCCTCTTGCCCCCTCGGAGGGGAGGGAGG
GAGGGAGGGAGGGCAGGAGGGAAGGGCCGTGCCAAGAGCGGCATGATCCT
CACCCTCCCCCTTCCCCGGTCCCTCCCCCTCCTTGAGCTGGACCTGGAAC
CCTTCCTCCTTCTCTTTCTCCCCATTGCCGCCTACCTGTCCTTGTATTCG
TTGCTACCTCACAAGGAACTACGCTTCATCTTCCCAGCGCTGCCAGTGCT
GAATTTGTGTGCCGCCGTCGGATGGGCGAGGTTGAGCGAAAGAGGGGAGG
AGGGGAGGAAGGGCAAAGGGGGAAAATGCAAGTCGCTTTCGATGTCCTCG
CTCTCTGTCCGCTTTTGCTGCGCGTGTTTGCCAGGGTGGGGGGTGATGCT
CCTCTCCCTTTTTACCCTCCCCCTATTCTTGGCCGCTTCGCGCAAAAATT
ACCCAGGAGGGGAAGGACTGCGAACCTTCCATGTCGAGATTGTGCCTCCT
CTGTTCTCGACTTTCCTCCCTTTGGTAACACCGACAGGGAAGGGGGGAGG
GAGGGACGGAGGGAGGGATCAGGTGAAGTTGCACATCGGTGTGCTGGCGG
CTCAGACGGGTGTGTCGCGCTTCGGGGAGGTCTGGAGGGAGGGAGGGAGG
GAGAGAGGGGTGGACGTGGTGTATGACAAGGAAGAAGGGCTGTCATTGCT
GGAGCGGATGCGACGGTATGATTTCCTGCTGCTGGAGAAAGAAGAGGCGG
AGGAGGCCATAAGAAAAAGGGAGGAACGGAATGAGGGCGAGAAGGGAAAA
GAGTGTGCTGTGATGAAGTGGGTGGAGGGACTGCCTTGTGCCAGACGACC
GAAGGAAATCTTGTGGAACCTTAGGAAAGAGTTCATGGAAGTTGCTGCTC
GGCTAAAGGGTAAGAGCGATCGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
ACTGAGGGATGGGAGAATATTTTTGTCAAGACGGAACCAGTGCTGGCCCT
GGTCATTTGTCACTGA back to topprotein sequence of NO10G03800.1 >NO10G03800.1-protein ID=NO10G03800.1-protein|Name=NO10G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MPPRLRSNTKSRGDSTCPPSPDSSRKDLMPQVKAPRQRPRGAARAAFAAF
VTEISLLDLLLLAVILLYLGLCPYSKVEESFNMQATHDLLFLSPFAPSSL
ASYDHLSFPGVVPRTFWGPILLALPIHLLLFPLLSLLPSPLHPTTKHPFQ
LIVRGLLALYLWIAFLVFRQAVTWRFGRRTGQCLLLLTLSQFHLPFYLSR
TLPNTFALAFVLLSYACLLRRSFTPALLLLALATALFRCDIIVLAAPLLL
LLVLLRHLSFSRLLVLGPAFGLVGILLSVVIDSHFWGRGREGGSSWVWPE
GMVLFFNTVENKSREWGTHPWHWYASSALPRALLASPLLWPFCLLPPRRG
GREGGRAGGKGRAKSGMILTLPLPRSLPLLELDLEPFLLLFLPIAAYLSL
YSLLPHKELRFIFPALPVLNLCAAVGWARLSERGEEGRKGKGGKCKSLSM
SSLSVRFCCACLPGWGVMLLSLFTLPLFLAASRKNYPGGEGLRTFHVEIV
PPLFSTFLPLVTPTGKGGGRDGGRDQVKLHIGVLAAQTGVSRFGEVWREG
GRERGVDVVYDKEEGLSLLERMRRYDFLLLEKEEAEEAIRKREERNEGEK
GKECAVMKWVEGLPCARRPKEILWNLRKEFMEVAARLKGKSDRSSSSSSS
SKTEGWENIFVKTEPVLALVICH* back to topmRNA from alignment at chr10:1100213..1102539- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03800.1 ID=NO10G03800.1|Name=NO10G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp|location=Sequence derived from alignment at chr10:1100213..1102539- (Nannochloropsis oceanica)
ACAGGGCTAGGATAGGATGCCCCAGTGTGACTCCTGAGACGCTTTGACGC
AGTCAATCGCTAAAAAAACAACTTTGTACGTACGTCGTTCAGTCATGCCT
CCTCGCCTCCGAAGCAACACCAAGAGCCGCGGCGACAGCACCTGTCCTCC
TTCTCCTGATAGCAGTAGAAAAGATCTAATGCCACAAGTTAAGGCACCGA
GACAACGACCGCGTGGGGCAGCAAGGGCAGCATTTGCGGCGTTCGTGACC
GAAATCTCCTTACTTGATCTGCTCCTCCTGGCAGTCATTCTTCTCTATCT
CGGCCTCTGCCCCTACAGCAAGGTATGAAAGGGAGGAAGAGAGAGAGGCA
GTATGATAGAGATGTGTAGAGCAAAAGGAAGGAGAATGGGCTCGTGCCTT
TCGTAGCATCCAGAAAATATGTCTCTCCTCTTAAGCGTCATCAAGGGCCA
GGCTGTGCCACTCTCCCCTCCTCTTGGCACGCAACACAGTCCCCTCATAC
CCGACCCTCTAAATCTCAAATCACCTGCTTTAGGTGGAAGAAAGCTTCAA
TATGCAAGCTACACATGACCTTCTCTTCCTTTCCCCTTTCGCCCCGTCCT
CCCTCGCGTCCTACGATCACCTCTCCTTCCCCGGCGTCGTCCCTCGCACC
TTCTGGGGCCCCATCCTCCTCGCCCTCCCCATCCATCTCCTCCTCTTCCC
CCTCCTCTCTCTCCTCCCATCCCCTCTCCACCCTACGACCAAACATCCCT
TTCAGCTCATTGTTCGCGGCCTCCTCGCCCTCTACCTCTGGATCGCCTTC
CTCGTCTTCCGCCAAGCCGTTACCTGGCGTTTCGGTCGTCGCACTGGACA
ATGCCTCCTCCTCCTCACCCTCTCCCAGTTCCATCTCCCGTTCTATCTCT
CCCGCACCCTCCCCAACACTTTTGCGCTGGCCTTCGTCCTCCTGTCGTAC
GCTTGTCTCCTCCGGCGCTCCTTCACTCCCGCCCTCCTCCTCCTCGCTCT
GGCCACTGCTCTCTTCCGTTGCGACATCATTGTACTCGCCGCGCCCCTCC
TCCTCCTCCTCGTCCTCCTCCGACACCTCTCCTTTTCCCGGCTCCTTGTC
TTGGGTCCCGCCTTTGGCCTGGTGGGTATACTTTTAAGCGTCGTGATCGA
CTCCCATTTCTGGGGACGGGGGAGGGAGGGAGGAAGCAGCTGGGTGTGGC
CTGAGGGCATGGTTCTGTTTTTTAATACCGTGGAGAACAAGTCAAGGGAG
TGGGGGACTCATCCCTGGCACTGGTATGCCTCGTCTGCCCTGCCTCGAGC
CTTGCTTGCCTCTCCGTTGCTGTGGCCATTCTGCCTCTTGCCCCCTCGGA
GGGGAGGGAGGGAGGGAGGGAGGGCAGGAGGGAAGGGCCGTGCCAAGAGC
GGCATGATCCTCACCCTCCCCCTTCCCCGGTCCCTCCCCCTCCTTGAGCT
GGACCTGGAACCCTTCCTCCTTCTCTTTCTCCCCATTGCCGCCTACCTGT
CCTTGTATTCGTTGCTACCTCACAAGGAACTACGCTTCATCTTCCCAGCG
CTGCCAGTGCTGAATTTGTGTGCCGCCGTCGGATGGGCGAGGTTGAGCGA
AAGAGGGGAGGAGGGGAGGAAGGGCAAAGGGGGAAAATGCAAGTCGCTTT
CGATGTCCTCGCTCTCTGTCCGCTTTTGCTGCGCGTGTTTGCCAGGGTGG
GGGGTGATGCTCCTCTCCCTTTTTACCCTCCCCCTATTCTTGGCCGCTTC
GCGCAAAAATTACCCAGGAGGGGAAGGACTGCGAACCTTCCATGTCGAGA
TTGTGCCTCCTCTGTTCTCGACTTTCCTCCCTTTGGTAACACCGACAGGG
AAGGGGGGAGGGAGGGACGGAGGGAGGGATCAGGTGAAGTTGCACATCGG
TGTGCTGGCGGCTCAGACGGGTGTGTCGCGCTTCGGGGAGGTCTGGAGGG
AGGGAGGGAGGGAGAGAGGGGTGGACGTGGTGTATGACAAGGAAGAAGGG
CTGTCATTGCTGGAGCGGATGCGACGGTATGATTTCCTGCTGCTGGAGAA
AGAAGAGGCGGAGGAGGCCATAAGAAAAAGGGAGGAACGGAATGAGGGCG
AGAAGGGAAAAGAGTGTGCTGTGATGAAGTGGGTGGAGGGACTGCCTTGT
GCCAGACGACCGAAGGAAATCTTGTGGAACCTTAGGAAAGAGTTCATGGA
AGTTGCTGCTCGGCTAAAGGGTAAGAGCGATCGCAGCAGCAGCAGCAGCA
GCAGCAGCAAGACTGAGGGATGGGAGAATATTTTTGTCAAGACGGAACCA
GTGCTGGCCCTGGTCATTTGTCACTGA back to topCoding sequence (CDS) from alignment at chr10:1100213..1102539- >NO10G03800.1 ID=NO10G03800.1|Name=NO10G03800.1|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at chr10:1100213..1102539- (Nannochloropsis oceanica)
ATGCCTCCTCGCCTCCGAAGCAACACCAAGAGCCGCGGCGACAGCACCTG
TCCTCCTTCTCCTGATAGCAGTAGAAAAGATCTAATGCCACAAGTTAAGG
CACCGAGACAACGACCGCGTGGGGCAGCAAGGGCAGCATTTGCGGCGTTC
GTGACCGAAATCTCCTTACTTGATCTGCTCCTCCTGGCAGTCATTCTTCT
CTATCTCGGCCTCTGCCCCTACAGCAAGGTGGAAGAAAGCTTCAATATGC
AAGCTACACATGACCTTCTCTTCCTTTCCCCTTTCGCCCCGTCCTCCCTC
GCGTCCTACGATCACCTCTCCTTCCCCGGCGTCGTCCCTCGCACCTTCTG
GGGCCCCATCCTCCTCGCCCTCCCCATCCATCTCCTCCTCTTCCCCCTCC
TCTCTCTCCTCCCATCCCCTCTCCACCCTACGACCAAACATCCCTTTCAG
CTCATTGTTCGCGGCCTCCTCGCCCTCTACCTCTGGATCGCCTTCCTCGT
CTTCCGCCAAGCCGTTACCTGGCGTTTCGGTCGTCGCACTGGACAATGCC
TCCTCCTCCTCACCCTCTCCCAGTTCCATCTCCCGTTCTATCTCTCCCGC
ACCCTCCCCAACACTTTTGCGCTGGCCTTCGTCCTCCTGTCGTACGCTTG
TCTCCTCCGGCGCTCCTTCACTCCCGCCCTCCTCCTCCTCGCTCTGGCCA
CTGCTCTCTTCCGTTGCGACATCATTGTACTCGCCGCGCCCCTCCTCCTC
CTCCTCGTCCTCCTCCGACACCTCTCCTTTTCCCGGCTCCTTGTCTTGGG
TCCCGCCTTTGGCCTGGTGGGTATACTTTTAAGCGTCGTGATCGACTCCC
ATTTCTGGGGACGGGGGAGGGAGGGAGGAAGCAGCTGGGTGTGGCCTGAG
GGCATGGTTCTGTTTTTTAATACCGTGGAGAACAAGTCAAGGGAGTGGGG
GACTCATCCCTGGCACTGGTATGCCTCGTCTGCCCTGCCTCGAGCCTTGC
TTGCCTCTCCGTTGCTGTGGCCATTCTGCCTCTTGCCCCCTCGGAGGGGA
GGGAGGGAGGGAGGGAGGGCAGGAGGGAAGGGCCGTGCCAAGAGCGGCAT
GATCCTCACCCTCCCCCTTCCCCGGTCCCTCCCCCTCCTTGAGCTGGACC
TGGAACCCTTCCTCCTTCTCTTTCTCCCCATTGCCGCCTACCTGTCCTTG
TATTCGTTGCTACCTCACAAGGAACTACGCTTCATCTTCCCAGCGCTGCC
AGTGCTGAATTTGTGTGCCGCCGTCGGATGGGCGAGGTTGAGCGAAAGAG
GGGAGGAGGGGAGGAAGGGCAAAGGGGGAAAATGCAAGTCGCTTTCGATG
TCCTCGCTCTCTGTCCGCTTTTGCTGCGCGTGTTTGCCAGGGTGGGGGGT
GATGCTCCTCTCCCTTTTTACCCTCCCCCTATTCTTGGCCGCTTCGCGCA
AAAATTACCCAGGAGGGGAAGGACTGCGAACCTTCCATGTCGAGATTGTG
CCTCCTCTGTTCTCGACTTTCCTCCCTTTGGTAACACCGACAGGGAAGGG
GGGAGGGAGGGACGGAGGGAGGGATCAGGTGAAGTTGCACATCGGTGTGC
TGGCGGCTCAGACGGGTGTGTCGCGCTTCGGGGAGGTCTGGAGGGAGGGA
GGGAGGGAGAGAGGGGTGGACGTGGTGTATGACAAGGAAGAAGGGCTGTC
ATTGCTGGAGCGGATGCGACGGTATGATTTCCTGCTGCTGGAGAAAGAAG
AGGCGGAGGAGGCCATAAGAAAAAGGGAGGAACGGAATGAGGGCGAGAAG
GGAAAAGAGTGTGCTGTGATGAAGTGGGTGGAGGGACTGCCTTGTGCCAG
ACGACCGAAGGAAATCTTGTGGAACCTTAGGAAAGAGTTCATGGAAGTTG
CTGCTCGGCTAAAGGGTAAGAGCGATCGCAGCAGCAGCAGCAGCAGCAGC
AGCAAGACTGAGGGATGGGAGAATATTTTTGTCAAGACGGAACCAGTGCT
GGCCCTGGTCATTTGTCACTGA back to top
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