NO10G03760.1, NO10G03760.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03760.1
Unique Name	NO10G03760.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2293
Alignment location	chr10:1090356..1092648 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1090356..1092648 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G03760.1 vs.

BLAST of NO10G03760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G03760	NO10G03760	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03760.1	NO10G03760.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03760.1.cds1	NO10G03760.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:1090356..1092648-
coding sequence from alignment at chr10:1090356..1092648-

mRNA sequence

>NO10G03760.1 ID=NO10G03760.1|Name=NO10G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCCCCAGGATCCTGTCAT
GGGCCCGGGGCGCATCTGTGCGTCGGTGAGCTTGCTCGTTGGACGACTAC
CGGTATAATCTAGTCAATCATTGGTCATCCTGTCCTTCGATTATGAACGA
CTCATAGTCGTCGTAGTCGTCCTCAATGGAAATCATGCAAGACTACGACT
AATCACATGACTATTACTAGCGGGAACGCCCGCCCTGTGGGCAGGCAGGT
GTGTGCATTTGGTGTGAGAGTCTTAGAAAAAGAGAGGATTGGGTGAAGGA
GGAAGTAAAAGGGGAGCATGTACGCCAGGTGCATACCTGGCTGTGACTAG
TGTAATGGTATATGTGTGTGTTTGAAGAAGGAGGCAAAGACCAAGAGAGA
AAGAGTCCGTTTCGAATGTTGTCTTTTCTTTTTTGGGAGGTTAACAAATC
CCAGGGTCAGAGCTTCCAAAAAGTCGCAATCTACTTGCCGTCCCCGGTTT
CTGCTCAACTGCACGTCGCACTCTCGATAGGAAGAGAACCCTCTCGCTCT
GGAGAGCGCGACGTACAGATGACCGTGGGCAAAAACCTGGGACGGCAAGT
AGACTGCAACTTTTTGGAAGCTCTGACCCTGCGATTTATTGAGCTCGAAA
AGTTGTTAGGTGTGGCTGTGCGCTTTTGTGGTAGTCTATACTTCCATCAT
GTCTTGGGGTTGCTGTGGTGGTGACTGTGGTGGTTACATGGACAGTTGTG
TGAGGTGTTGTGACGTGTATGGGTTTATTCACACCAAGGTGACGGTGGAC
GATCCCATGTATTCGTTGGAGTTGACACGGAGTTGATGGAAATATTGGAG
GGGCAGCTGCCCGGGGCGGTGTAGCACTGTATGTGTCACGAACCACCATT
CGTCTTCATGCATGAAACCGTTCGTTGATCCCCGTATGGATGAAAAGGAT
TTCGGGGACTCAATGGATGTGTGCACGACCAATTCGGATGCAACCAAATC
GATTGCACCGATCTGGATGGAGGAATACCATCCATAGACAATATTTTGGA
AGCTATCCACATAGACCCAATTTTTATCGTGGTGCAATGGATTGGGACCT
TTGATAACGTCCTGAATGGTCATTGTCCATGTGGTCGGATCAAGGATGCT
AAGCACTTGATTGATGTGCCCGCTCACCCGGGTGTATTCCCAGGAGTTCG
AAAGAGTATAAATCGGAGCATTCTCATCATACACCAGAAATTGTGTATCT
TCTAGGCCGGTTACATACGTCGGGGAAACGCAGATTTTCTGGCGTGGCAA
CAACTGAAAAGGCTGGGGATTCGGTAACACGGATCCACCCGTCCGTTTCC
GTGACCAGCATCTTAGTCTTAACTTGGTGGTCATTCAAAACGCGGTAGGA
TCCATCGAGATCGGCGTCGAAATTGCCAAGGAAATGCTTCACGAAGTGAA
ATTCAGGGAAGCCATGTATATCTAGTCGAGGCTTATAGACTACATTGGGT
GTGGTATGTGTGGGAGGGGGCTGACCGCGTAGAGGAGGGTGGGTGACCAC
CATGGTGATGTTGGTGGGGTCTCATACTCTCGAGAGCGTGACACAAAGTT
GACCGTGAGCAAATACCTGGGACGGCAAGTAGATTGCAACTTTTGGAAGG
TCTGCCCCTGAGATTTGTTTATGATCATGGCGAAGAAAGGCCGGACCGGG
TACTGACATCGGCGGAGGATGAACGGTACATCCTTGGTGTCGTCGTTGGT
GTCCATGTTGATCCTGGGAAGGCAAACAACTTAACCCACCTGGCTTTCCG
TCAAAATTTTGGCCTGGATGACGCGAGGAGACAGATGCATGATGAGCAAC
CATGTTCCATTGGCGAGGCCTTGCTGGACGGCGTGGTCATTCAAGGTGTC
GACGTCCTTATTCCTGGGGGTGAGGATGGCGCGATCAATAGGAGTTTTCT
CCGCTGTGTTGCGCGCGTCATTGAAGTCCCCGTAGACGTAGTCGAGGAGC
CGAACGTGGTCGTTGTTCAGCTCTGGCGGAGGGTGCATGAAGGGGGGCAG
GAGGTATTCCAACTGAGGTGGAGGCGGAGGCGGAGTGGCATGGTCCCGGC
CCTGGCCTGCGCCTCCACATGGCTCAGGTTGAATTGCATCATCGTCGCCG
TTCGTGAATTGGCTGCCAAAAGTTGTCGCGCGTCGAAGACGGCACCGACG
ACCTCAACGCTGCGCATCATTCTCGTCGTGTTCATTACCACCATTCATGC
TTCCACCCAGGTGCACAATAGACATGACGGTGCTGTGCTGTGA

protein sequence of NO10G03760.1

>NO10G03760.1-protein ID=NO10G03760.1-protein|Name=NO10G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MHDEQPCSIGEALLDGVVIQGVDVLIPGGEDGAINRSFLRCVARVIEVPV
DVVEEPNVVVVQLWRRVHEGGQEVFQLRWRRRRSGMVPALACASTWLRLN
CIIVAVRELAAKSCRASKTAPTTSTLRIILVVFITTIHASTQVHNRHDGA
VL*

mRNA from alignment at chr10:1090356..1092648-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G03760.1 ID=NO10G03760.1|Name=NO10G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at chr10:1090356..1092648- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCCCCAGGATCCTGTCAT
GGGCCCGGGGCGCATCTGTGCGTCGGTGAGCTTGCTCGTTGGACGACTAC
CGGTATAATCTAGTCAATCATTGGTCATCCTGTCCTTCGATTATGAACGA
CTCATAGTCGTCGTAGTCGTCCTCAATGGAAATCATGCAAGACTACGACT
AATCACATGACTATTACTAGCGGGAACGCCCGCCCTGTGGGCAGGCAGGT
GTGTGCATTTGGTGTGAGAGTCTTAGAAAAAGAGAGGATTGGGTGAAGGA
GGAAGTAAAAGGGGAGCATGTACGCCAGGTGCATACCTGGCTGTGACTAG
TGTAATGGTATATGTGTGTGTTTGAAGAAGGAGGCAAAGACCAAGAGAGA
AAGAGTCCGTTTCGAATGTTGTCTTTTCTTTTTTGGGAGGTTAACAAATC
CCAGGGTCAGAGCTTCCAAAAAGTCGCAATCTACTTGCCGTCCCCGGTTT
CTGCTCAACTGCACGTCGCACTCTCGATAGGAAGAGAACCCTCTCGCTCT
GGAGAGCGCGACGTACAGATGACCGTGGGCAAAAACCTGGGACGGCAAGT
AGACTGCAACTTTTTGGAAGCTCTGACCCTGCGATTTATTGAGCTCGAAA
AGTTGTTAGGTGTGGCTGTGCGCTTTTGTGGTAGTCTATACTTCCATCAT
GTCTTGGGGTTGCTGTGGTGGTGACTGTGGTGGTTACATGGACAGTTGTG
TGAGGTGTTGTGACGTGTATGGGTTTATTCACACCAAGGTGACGGTGGAC
GATCCCATGTATTCGTTGGAGTTGACACGGAGTTGATGGAAATATTGGAG
GGGCAGCTGCCCGGGGCGGTGTAGCACTGTATGTGTCACGAACCACCATT
CGTCTTCATGCATGAAACCGTTCGTTGATCCCCGTATGGATGAAAAGGAT
TTCGGGGACTCAATGGATGTGTGCACGACCAATTCGGATGCAACCAAATC
GATTGCACCGATCTGGATGGAGGAATACCATCCATAGACAATATTTTGGA
AGCTATCCACATAGACCCAATTTTTATCGTGGTGCAATGGATTGGGACCT
TTGATAACGTCCTGAATGGTCATTGTCCATGTGGTCGGATCAAGGATGCT
AAGCACTTGATTGATGTGCCCGCTCACCCGGGTGTATTCCCAGGAGTTCG
AAAGAGTATAAATCGGAGCATTCTCATCATACACCAGAAATTGTGTATCT
TCTAGGCCGGTTACATACGTCGGGGAAACGCAGATTTTCTGGCGTGGCAA
CAACTGAAAAGGCTGGGGATTCGGTAACACGGATCCACCCGTCCGTTTCC
GTGACCAGCATCTTAGTCTTAACTTGGTGGTCATTCAAAACGCGGTAGGA
TCCATCGAGATCGGCGTCGAAATTGCCAAGGAAATGCTTCACGAAGTGAA
ATTCAGGGAAGCCATGTATATCTAGTCGAGGCTTATAGACTACATTGGGT
GTGGTATGTGTGGGAGGGGGCTGACCGCGTAGAGGAGGGTGGGTGACCAC
CATGGTGATGTTGGTGGGGTCTCATACTCTCGAGAGCGTGACACAAAGTT
GACCGTGAGCAAATACCTGGGACGGCAAGTAGATTGCAACTTTTGGAAGG
TCTGCCCCTGAGATTTGTTTATGATCATGGCGAAGAAAGGCCGGACCGGG
TACTGACATCGGCGGAGGATGAACGGTACATCCTTGGTGTCGTCGTTGGT
GTCCATGTTGATCCTGGGAAGGCAAACAACTTAACCCACCTGGCTTTCCG
TCAAAATTTTGGCCTGGATGACGCGAGGAGACAGATGCATGATGAGCAAC
CATGTTCCATTGGCGAGGCCTTGCTGGACGGCGTGGTCATTCAAGGTGTC
GACGTCCTTATTCCTGGGGGTGAGGATGGCGCGATCAATAGGAGTTTTCT
CCGCTGTGTTGCGCGCGTCATTGAAGTCCCCGTAGACGTAGTCGAGGAGC
CGAACGTGGTCGTTGTTCAGCTCTGGCGGAGGGTGCATGAAGGGGGGCAG
GAGGTATTCCAACTGAGGTGGAGGCGGAGGCGGAGTGGCATGGTCCCGGC
CCTGGCCTGCGCCTCCACATGGCTCAGGTTGAATTGCATCATCGTCGCCG
TTCGTGAATTGGCTGCCAAAAGTTGTCGCGCGTCGAAGACGGCACCGACG
ACCTCAACGCTGCGCATCATTCTCGTCGTGTTCATTACCACCATTCATGC
TTCCACCCAGGTGCACAATAGACATGACGGTGCTGTGCTGTGA

Coding sequence (CDS) from alignment at chr10:1090356..1092648-

>NO10G03760.1 ID=NO10G03760.1|Name=NO10G03760.1|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at chr10:1090356..1092648- (Nannochloropsis oceanica)
ATGCATGATGAGCAACCATGTTCCATTGGCGAGGCCTTGCTGGACGGCGT
GGTCATTCAAGGTGTCGACGTCCTTATTCCTGGGGGTGAGGATGGCGCGA
TCAATAGGAGTTTTCTCCGCTGTGTTGCGCGCGTCATTGAAGTCCCCGTA
GACGTAGTCGAGGAGCCGAACGTGGTCGTTGTTCAGCTCTGGCGGAGGGT
GCATGAAGGGGGGCAGGAGGTATTCCAACTGAGGTGGAGGCGGAGGCGGA
GTGGCATGGTCCCGGCCCTGGCCTGCGCCTCCACATGGCTCAGGTTGAAT
TGCATCATCGTCGCCGTTCGTGAATTGGCTGCCAAAAGTTGTCGCGCGTC
GAAGACGGCACCGACGACCTCAACGCTGCGCATCATTCTCGTCGTGTTCA
TTACCACCATTCATGCTTCCACCCAGGTGCACAATAGACATGACGGTGCT
GTGCTGTGA

Synonyms

Publications