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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:1073487..1076844 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03720.1 vs.
Match: EWM25568.1 (nadh dehydrogenase, partial [Nannochloropsis gaditana]) HSP 1 Score: 458.4 bits (1178), Expect = 2.200e-125 Identity = 220/258 (85.27%), Postives = 238/258 (92.25%), Query Frame = 0
Query: 115 GKYYDTKHMIPYHRNRGGKLSNVNFPLEEIHIEAPARLAEVAKSVGVEHFLHVSALGADPESNVRWLATKGKGEEALKSVFPTATIVRPGRLFGPEDRLLNWFAQ-AAEAGIVPLFNGGEALLQPTYVSDVVDAMIKIIEDPEDYEGKTFELAGENNFTWRELMDFTLDVTYQKPEIVDLPLAVGEVASLALEQLPNPVLTVDDAKLMSTDVILEPSSKAMTFKDLDIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 372
GKYYDTKH++P HR+ GKLSNVNF LEEIHIEAPA+LAE+AKSVGV HFLHVSALGAD +S VRWLATKG+GEEALKSVFP ATIVRPGRLFGPEDRLLNWFAQ AA G++PLFNGG ALLQPTY SDVVDAM+KIIEDPEDYEGKTFELAGE+NFTWRELMDFT D+TYQKP +VDLPLAVGE+A+ L QLPNP+LT+DDAKLMSTDVILEPSS AMTF+DL IKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH
Sbjct: 17 GKYYDTKHLVP-HRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03720.1 ID=NO10G03720.1|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp ATGGCCAGCACTCGCTTCCTTTCTCGAAGGGGCCTCAGTGGCGTTGCGGC TGGGCAGCTCGAGAAGGGTTTCAAGGATTTTGGTCCCGGGGGACGCTCGT CAGTGGCGGGCATCACAGCCTCTTTGTTTGGAGGCACCGGCTTCCTGGGT AAATACCTGCAGTTCGAAATGGGCAAAGTGGGCTACCGCCTCTATCTTGC GAACCGTGGGGATGAGCAGGACGTGCGCCCCTTCAAGGTGGCCTTTGACT TGGGCCAGTGGGCCTCTATTCCGTACAGTATCAGGGACGAGGACTCTATC AAGCGGGTACTGGAGGGAAGCGACGTGGCGATCAACTGCATCGGTAAATA TTATGACACGAAGCACATGATTCCGTATCACCGCAACCGCGGGGGCAAGC TGTCCAATGTCAATTTCCCCTTGGAAGAGATCCACATCGAGGCGCCGGCC AGGCTCGCGGAGGTGGCCAAGTCGGTGGGTGTAGAGCATTTCCTCCACGT GTCGGCTCTCGGGGCAGACCCGGAATCAAACGTCCGGTGGCTGGCGACCA AGGGCAAGGGCGAGGAGGCTCTGAAGAGTGTGTTTCCCACGGCCACCATC GTCCGCCCTGGACGACTTTTTGGGCCGGAAGACCGGCTCCTGAACTGGTT TGCGCAGGCCGCGGAAGCCGGTATCGTCCCCCTTTTCAACGGCGGCGAGG CTCTGCTCCAGCCAACGTACGTCTCGGATGTGGTTGATGCCATGATCAAG ATCATCGAGGATCCGGAAGACTACGAGGGCAAGACGTTCGAGCTGGCGGG GGAGAACAATTTCACTTGGCGAGAACTGATGGATTTCACCCTGGATGTCA CGTATCAAAAACCGGAGATAGTGGACTTACCTCTGGCTGTGGGGGAGGTT GCCTCTCTTGCCCTGGAGCAGCTGCCCAACCCGGTGCTGACGGTGGATGA TGCCAAGCTCATGTCCACGGACGTCATCCTTGAGCCGTCTTCGAAAGCGA TGACCTTTAAAGACCTCGACATTAAGCCTACCCCGCTGGAGAAGGTGGCG TTCAACTACCTGTATAGGTATAGGACAGACGGCGGGCATTTCCCGTACGC GGAGGGGTACCATTGA back to topprotein sequence of NO10G03720.1 >NO10G03720.1-protein ID=NO10G03720.1-protein|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp MASTRFLSRRGLSGVAAGQLEKGFKDFGPGGRSSVAGITASLFGGTGFLG KYLQFEMGKVGYRLYLANRGDEQDVRPFKVAFDLGQWASIPYSIRDEDSI KRVLEGSDVAINCIGKYYDTKHMIPYHRNRGGKLSNVNFPLEEIHIEAPA RLAEVAKSVGVEHFLHVSALGADPESNVRWLATKGKGEEALKSVFPTATI VRPGRLFGPEDRLLNWFAQAAEAGIVPLFNGGEALLQPTYVSDVVDAMIK IIEDPEDYEGKTFELAGENNFTWRELMDFTLDVTYQKPEIVDLPLAVGEV ASLALEQLPNPVLTVDDAKLMSTDVILEPSSKAMTFKDLDIKPTPLEKVA FNYLYRYRTDGGHFPYAEGYH* back to topmRNA from alignment at chr10:1073487..1076844+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03720.1 ID=NO10G03720.1|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=3358bp|location=Sequence derived from alignment at chr10:1073487..1076844+ (Nannochloropsis oceanica) ATGGCCAGCACTCGCTTCCTTTCTCGAAGGGGCCTCAGTGGCGTTGCGGC
TGGGCAGCTCGAGAAGGGTTTCAAGGATTTTGGTCCCGGGGGACGCTCGT
CAGTGGCGGGCATCACAGCCTCTTTGTTTGGAGGGTGAGTAAGATGAGGC
GAGGGCAAGGATGATTGATGATGATGGAGGGGGAGGGCAAGGAAAAGCGG
GAACAAAGGACAGGCTAGCAAGTGTGCCAGTGGCCAGTGCATGGATGAGA
GGGGAAGCGATGATGCTCTGAACATGGCCGGGCTTCGAATTTCCCATCCT
TTCACTCCCTCGCTCACCATCTTGCCTGCGCCCTCCCTCCCTCCCTCCCT
TCCTCCCTCTTTCCCTCCCACCCATCAAACGTAGCACCGGCTTCCTGGGT
AAATACCTGCAGTTCGAAATGGGCAAAGTGGGCTACCGCCTCTATCTTGC
GAACCGTGGGGATGAGCAGGACGTGCGCCCCTTCAAGGTGGCCTTTGACT
TGGGCCAGGTAGGGAGGGAGGGAGGGAGGGAGGAAGGGACAGAGGGGAGG
AAGACTTGAGTGTTGAAGAGGATGTATCGTACACCTTTATGTGGAAGAAG
TAAGATGGGTGATGATGGAAGATCACCTTATGGCTGGTTGACGCACCACT
ACCCTTGGAGCCATTCGATTGAAAGAAGCAGGACATAAACCGACCACCAA
CCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTATCCGACCCAGTGG
GCCTCTATTCCGTACAGTATCAGGGACGAGGACTCTATCAAGCGGGTACT
GGAGGGAAGCGACGTGGCGATCAACTGCATCGGTAGGGAGGGAGGGAAGG
AGGGGGGGGGGAAGATAGGAAGGATGGGAGCAATACAATTCAAGTCGAGT
GTTTAACCGCATAACCATCTATGTATAAATTGTACCGATAATATATGTAT
GTATGTATTGTATAGACATATATGATACTCACCCACTCTCATTCCTCCAC
TCTTAGCTTGCTTGTTGAAAAGCCGAAGCTCAATTGAAGGAGTTGTGTCG
GGAGTTGTGGATTTACTCACCCTCATTCCTACACTCTGTGTATACTTATG
CTACCAGCTTCAGCGAACCCCACGCCAAGACTGGAGTGATTTACATTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCCCTTTCCGCAGGT
AAATATTATGACACGAAGCACATGATTCCGTATCACCGCAACCGCGGGGG
CAAGCTGTCCAATGTCAATTTCCCCTTGGAAGAGATCCACATCGAGGCGC
CGGCCAGGGTAAGAAGGGAGGGAGGGAGGGAGGGTAGCTCTGTTTCGTAT
CTCATTTCATTTCGCCAACTCATTCACGTTTTCTTTTTCCCCCTCCCTCC
CCCCTCATTTCCTCCCTCCCTCCCTCCCTCCCCTCCCCCCTCGCAGCTCG
CGGAGGTGGCCAAGTCGGTGGGTGTAGAGCATTTCCTCCACGTGTCGGCT
CTCGGGGCAGACCCGGAATCAAACGTCCGGTGGCTGGCGACCAAGGGCAA
GGTGAGGGAGGGAGGGAGGGGATGGTCGGGTGCGTGTCACTACTTAAATA
CACTAGTTCATCAATGCACCAATACACTCACTCACCCACTCACCGCCATA
ATGCTCCCTCTCCCTCCCCCTCCCCCTCCCTTTCCCTCTCCTTCCAGGGC
GAGGAGGCTCTGAAGAGTGTGTTTCCCACGGCCACCATCGTCCGCCCTGG
ACGACTTTTTGGGCCGGAAGACCGGCTCCTGAACTGGTTTGCGCAGGTAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCAAGGAAAGAGAAAGAGG
GCAGAGGGACGAAAAGCATGAAGGAATGTTGAGACTGTGACGGACACGCG
CGAACAATAATAAATTATAATTATAATGTGATATATCACATGATATAATT
ACATGTCATTTCTTTTGGTCTAATAATTATTGATTGATTTGAATATTAAT
AATCCTCCAATGTACTATATAATCCACACAGGCCGCGGAAGCCGGTATCG
TCCCCCTTTTCAACGGCGGTACGTGCCCCCCCCTCTCTCCCTCCCTCCCT
CCCTCCCTCCCTTTTGCACTCCCTTCTGCACAAGCCCTCATCCCTCTCCT
TCCTTCCTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTA
GGCGAGGCTCTGCTCCAGCCAACGTACGTCTCGGATGTGGTTGATGCCAT
GATCAAGATCATCGAGGTAGGGAAGGGGTAAGGGAAGGGAGGAGGGCGAA
GAAGCAACAATCAGTCATGAAAAAAATGTTTATCGTTTTCCCTCTTCCTT
CCTCCCACCCTCCTTCCCTCCCTCAGGATCCGGAAGACTACGAGGGCAAG
ACGTTCGAGCTGGCGGGGGAGAACAATTTCACTTGGCGAGAACTGATGGA
TTTCACCCTGGATGTAAGGAGGGGGGGGGGAGGGAGGGAAAGAGGAAGGG
AGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGAGAGTGAGAGAGGGAG
AGAGGGAGAGAGGGGTGGTAGACATAGATCTCCGCAGGTGCTTGCCTAGT
TTAAGTCAGGAGCAGGCGGATGAGAGACATCTTGGCCATTGATTCGACGT
ACAATCTTTGGAGCCCTGTAGCTCAGTCCCTCCCTCACTCCTTCCCTCCC
TTTCTCCCTCCTTCTCTCCCTTCCCTGAGACGTGCCCCAAACGCCCACGA
CCTGGATCCGCCTCTAGGGGAGTCAAGGCCTCAAACCAAGCCCTTGAACT
GACTCCCTCCCTCCCTCTCTCGCCCCCCCCCTTCCTTTCCCAGGTCACGT
ATCAAAAACCGGAGATAGTGGACTTACCTCTGGCTGTGGGGGAGGTTGCC
TCTCTTGCCCTGGAGCAGCTGCCCAACCCGGTGCTGACGGTGGATGATGC
CAAGCTCATGTACGCAGGGAGGGAGGGAGGGAAGGAGGGAGGGGAGGGTG
GGTGGTCGTTAAAGGCCTTCAACTAATGTCTGGAGGCTGACCACACCCTT
ATATATCCTCTCTGACCTTCTTCCCTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTAGGTCCACGGACGTCATCCTTGAGCCGTCTTCGAAAGCG
ATGACCTTTAAAGACCTCGACATTAAGCCTACCCCGCTGGAGAAGGTGGC
GTTCAACTACCTGTATAGGTGAGGAGGGAGGGATGGAGGGAGGGAGGGAA
GGGACGGTGGGTAGGGGGTGTATTCAACTCACTGGATTACTTTTTGCATG
GTTTTACAGGTATAGGACAGACGGCGGGCATTTCCCGTACGCGGAGGGGT
ACCATTGA back to topCoding sequence (CDS) from alignment at chr10:1073487..1076844+ >NO10G03720.1 ID=NO10G03720.1|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr10:1073487..1076844+ (Nannochloropsis oceanica) ATGGCCAGCACTCGCTTCCTTTCTCGAAGGGGCCTCAGTGGCGTTGCGGC TGGGCAGCTCGAGAAGGGTTTCAAGGATTTTGGTCCCGGGGGACGCTCGT CAGTGGCGGGCATCACAGCCTCTTTGTTTGGAGGCACCGGCTTCCTGGGT AAATACCTGCAGTTCGAAATGGGCAAAGTGGGCTACCGCCTCTATCTTGC GAACCGTGGGGATGAGCAGGACGTGCGCCCCTTCAAGGTGGCCTTTGACT TGGGCCAGTGGGCCTCTATTCCGTACAGTATCAGGGACGAGGACTCTATC AAGCGGGTACTGGAGGGAAGCGACGTGGCGATCAACTGCATCGGTAAATA TTATGACACGAAGCACATGATTCCGTATCACCGCAACCGCGGGGGCAAGC TGTCCAATGTCAATTTCCCCTTGGAAGAGATCCACATCGAGGCGCCGGCC AGGCTCGCGGAGGTGGCCAAGTCGGTGGGTGTAGAGCATTTCCTCCACGT GTCGGCTCTCGGGGCAGACCCGGAATCAAACGTCCGGTGGCTGGCGACCA AGGGCAAGGGCGAGGAGGCTCTGAAGAGTGTGTTTCCCACGGCCACCATC GTCCGCCCTGGACGACTTTTTGGGCCGGAAGACCGGCTCCTGAACTGGTT TGCGCAGGCCGCGGAAGCCGGTATCGTCCCCCTTTTCAACGGCGGCGAGG CTCTGCTCCAGCCAACGTACGTCTCGGATGTGGTTGATGCCATGATCAAG ATCATCGAGGATCCGGAAGACTACGAGGGCAAGACGTTCGAGCTGGCGGG GGAGAACAATTTCACTTGGCGAGAACTGATGGATTTCACCCTGGATGTCA CGTATCAAAAACCGGAGATAGTGGACTTACCTCTGGCTGTGGGGGAGGTT GCCTCTCTTGCCCTGGAGCAGCTGCCCAACCCGGTGCTGACGGTGGATGA TGCCAAGCTCATGTCCACGGACGTCATCCTTGAGCCGTCTTCGAAAGCGA TGACCTTTAAAGACCTCGACATTAAGCCTACCCCGCTGGAGAAGGTGGCG TTCAACTACCTGTATAGGTATAGGACAGACGGCGGGCATTTCCCGTACGC GGAGGGGTACCATTGA back to top
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