NO10G03720.1, NO10G03720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03720.1
Unique NameNO10G03720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr10:1073487..1076844 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1073487..1076844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G03720.1 vs.
Match: EWM25568.1 (nadh dehydrogenase, partial [Nannochloropsis gaditana])

HSP 1 Score: 458.4 bits (1178), Expect = 2.200e-125
Identity = 220/258 (85.27%), Postives = 238/258 (92.25%), Query Frame = 0
Query:  115 GKYYDTKHMIPYHRNRGGKLSNVNFPLEEIHIEAPARLAEVAKSVGVEHFLHVSALGADPESNVRWLATKGKGEEALKSVFPTATIVRPGRLFGPEDRLLNWFAQ-AAEAGIVPLFNGGEALLQPTYVSDVVDAMIKIIEDPEDYEGKTFELAGENNFTWRELMDFTLDVTYQKPEIVDLPLAVGEVASLALEQLPNPVLTVDDAKLMSTDVILEPSSKAMTFKDLDIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 372
            GKYYDTKH++P HR+  GKLSNVNF LEEIHIEAPA+LAE+AKSVGV HFLHVSALGAD +S VRWLATKG+GEEALKSVFP ATIVRPGRLFGPEDRLLNWFAQ AA  G++PLFNGG ALLQPTY SDVVDAM+KIIEDPEDYEGKTFELAGE+NFTWRELMDFT D+TYQKP +VDLPLAVGE+A+  L QLPNP+LT+DDAKLMSTDVILEPSS AMTF+DL IKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH
Sbjct:   17 GKYYDTKHLVP-HRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273          
The following BLAST results are available for this feature:
BLAST of NO10G03720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25568.12.200e-12585.27nadh dehydrogenase, partial [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03720NO10G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03720.1NO10G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03720.1.cds1NO10G03720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds2NO10G03720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds3NO10G03720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds4NO10G03720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds5NO10G03720.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds6NO10G03720.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds7NO10G03720.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds8NO10G03720.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds9NO10G03720.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds10NO10G03720.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds11NO10G03720.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03720.1.cds12NO10G03720.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03720.1 ID=NO10G03720.1|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
ATGGCCAGCACTCGCTTCCTTTCTCGAAGGGGCCTCAGTGGCGTTGCGGC
TGGGCAGCTCGAGAAGGGTTTCAAGGATTTTGGTCCCGGGGGACGCTCGT
CAGTGGCGGGCATCACAGCCTCTTTGTTTGGAGGCACCGGCTTCCTGGGT
AAATACCTGCAGTTCGAAATGGGCAAAGTGGGCTACCGCCTCTATCTTGC
GAACCGTGGGGATGAGCAGGACGTGCGCCCCTTCAAGGTGGCCTTTGACT
TGGGCCAGTGGGCCTCTATTCCGTACAGTATCAGGGACGAGGACTCTATC
AAGCGGGTACTGGAGGGAAGCGACGTGGCGATCAACTGCATCGGTAAATA
TTATGACACGAAGCACATGATTCCGTATCACCGCAACCGCGGGGGCAAGC
TGTCCAATGTCAATTTCCCCTTGGAAGAGATCCACATCGAGGCGCCGGCC
AGGCTCGCGGAGGTGGCCAAGTCGGTGGGTGTAGAGCATTTCCTCCACGT
GTCGGCTCTCGGGGCAGACCCGGAATCAAACGTCCGGTGGCTGGCGACCA
AGGGCAAGGGCGAGGAGGCTCTGAAGAGTGTGTTTCCCACGGCCACCATC
GTCCGCCCTGGACGACTTTTTGGGCCGGAAGACCGGCTCCTGAACTGGTT
TGCGCAGGCCGCGGAAGCCGGTATCGTCCCCCTTTTCAACGGCGGCGAGG
CTCTGCTCCAGCCAACGTACGTCTCGGATGTGGTTGATGCCATGATCAAG
ATCATCGAGGATCCGGAAGACTACGAGGGCAAGACGTTCGAGCTGGCGGG
GGAGAACAATTTCACTTGGCGAGAACTGATGGATTTCACCCTGGATGTCA
CGTATCAAAAACCGGAGATAGTGGACTTACCTCTGGCTGTGGGGGAGGTT
GCCTCTCTTGCCCTGGAGCAGCTGCCCAACCCGGTGCTGACGGTGGATGA
TGCCAAGCTCATGTCCACGGACGTCATCCTTGAGCCGTCTTCGAAAGCGA
TGACCTTTAAAGACCTCGACATTAAGCCTACCCCGCTGGAGAAGGTGGCG
TTCAACTACCTGTATAGGTATAGGACAGACGGCGGGCATTTCCCGTACGC
GGAGGGGTACCATTGA
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protein sequence of NO10G03720.1

>NO10G03720.1-protein ID=NO10G03720.1-protein|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MASTRFLSRRGLSGVAAGQLEKGFKDFGPGGRSSVAGITASLFGGTGFLG
KYLQFEMGKVGYRLYLANRGDEQDVRPFKVAFDLGQWASIPYSIRDEDSI
KRVLEGSDVAINCIGKYYDTKHMIPYHRNRGGKLSNVNFPLEEIHIEAPA
RLAEVAKSVGVEHFLHVSALGADPESNVRWLATKGKGEEALKSVFPTATI
VRPGRLFGPEDRLLNWFAQAAEAGIVPLFNGGEALLQPTYVSDVVDAMIK
IIEDPEDYEGKTFELAGENNFTWRELMDFTLDVTYQKPEIVDLPLAVGEV
ASLALEQLPNPVLTVDDAKLMSTDVILEPSSKAMTFKDLDIKPTPLEKVA
FNYLYRYRTDGGHFPYAEGYH*
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mRNA from alignment at chr10:1073487..1076844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03720.1 ID=NO10G03720.1|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=3358bp|location=Sequence derived from alignment at chr10:1073487..1076844+ (Nannochloropsis oceanica)
ATGGCCAGCACTCGCTTCCTTTCTCGAAGGGGCCTCAGTGGCGTTGCGGC TGGGCAGCTCGAGAAGGGTTTCAAGGATTTTGGTCCCGGGGGACGCTCGT CAGTGGCGGGCATCACAGCCTCTTTGTTTGGAGGGTGAGTAAGATGAGGC GAGGGCAAGGATGATTGATGATGATGGAGGGGGAGGGCAAGGAAAAGCGG GAACAAAGGACAGGCTAGCAAGTGTGCCAGTGGCCAGTGCATGGATGAGA GGGGAAGCGATGATGCTCTGAACATGGCCGGGCTTCGAATTTCCCATCCT TTCACTCCCTCGCTCACCATCTTGCCTGCGCCCTCCCTCCCTCCCTCCCT TCCTCCCTCTTTCCCTCCCACCCATCAAACGTAGCACCGGCTTCCTGGGT AAATACCTGCAGTTCGAAATGGGCAAAGTGGGCTACCGCCTCTATCTTGC GAACCGTGGGGATGAGCAGGACGTGCGCCCCTTCAAGGTGGCCTTTGACT TGGGCCAGGTAGGGAGGGAGGGAGGGAGGGAGGAAGGGACAGAGGGGAGG AAGACTTGAGTGTTGAAGAGGATGTATCGTACACCTTTATGTGGAAGAAG TAAGATGGGTGATGATGGAAGATCACCTTATGGCTGGTTGACGCACCACT ACCCTTGGAGCCATTCGATTGAAAGAAGCAGGACATAAACCGACCACCAA CCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTATCCGACCCAGTGG GCCTCTATTCCGTACAGTATCAGGGACGAGGACTCTATCAAGCGGGTACT GGAGGGAAGCGACGTGGCGATCAACTGCATCGGTAGGGAGGGAGGGAAGG AGGGGGGGGGGAAGATAGGAAGGATGGGAGCAATACAATTCAAGTCGAGT GTTTAACCGCATAACCATCTATGTATAAATTGTACCGATAATATATGTAT GTATGTATTGTATAGACATATATGATACTCACCCACTCTCATTCCTCCAC TCTTAGCTTGCTTGTTGAAAAGCCGAAGCTCAATTGAAGGAGTTGTGTCG GGAGTTGTGGATTTACTCACCCTCATTCCTACACTCTGTGTATACTTATG CTACCAGCTTCAGCGAACCCCACGCCAAGACTGGAGTGATTTACATTTCC CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCCCTTTCCGCAGGT AAATATTATGACACGAAGCACATGATTCCGTATCACCGCAACCGCGGGGG CAAGCTGTCCAATGTCAATTTCCCCTTGGAAGAGATCCACATCGAGGCGC CGGCCAGGGTAAGAAGGGAGGGAGGGAGGGAGGGTAGCTCTGTTTCGTAT CTCATTTCATTTCGCCAACTCATTCACGTTTTCTTTTTCCCCCTCCCTCC CCCCTCATTTCCTCCCTCCCTCCCTCCCTCCCCTCCCCCCTCGCAGCTCG CGGAGGTGGCCAAGTCGGTGGGTGTAGAGCATTTCCTCCACGTGTCGGCT CTCGGGGCAGACCCGGAATCAAACGTCCGGTGGCTGGCGACCAAGGGCAA GGTGAGGGAGGGAGGGAGGGGATGGTCGGGTGCGTGTCACTACTTAAATA CACTAGTTCATCAATGCACCAATACACTCACTCACCCACTCACCGCCATA ATGCTCCCTCTCCCTCCCCCTCCCCCTCCCTTTCCCTCTCCTTCCAGGGC GAGGAGGCTCTGAAGAGTGTGTTTCCCACGGCCACCATCGTCCGCCCTGG ACGACTTTTTGGGCCGGAAGACCGGCTCCTGAACTGGTTTGCGCAGGTAG GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCAAGGAAAGAGAAAGAGG GCAGAGGGACGAAAAGCATGAAGGAATGTTGAGACTGTGACGGACACGCG CGAACAATAATAAATTATAATTATAATGTGATATATCACATGATATAATT ACATGTCATTTCTTTTGGTCTAATAATTATTGATTGATTTGAATATTAAT AATCCTCCAATGTACTATATAATCCACACAGGCCGCGGAAGCCGGTATCG TCCCCCTTTTCAACGGCGGTACGTGCCCCCCCCTCTCTCCCTCCCTCCCT CCCTCCCTCCCTTTTGCACTCCCTTCTGCACAAGCCCTCATCCCTCTCCT TCCTTCCTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTA GGCGAGGCTCTGCTCCAGCCAACGTACGTCTCGGATGTGGTTGATGCCAT GATCAAGATCATCGAGGTAGGGAAGGGGTAAGGGAAGGGAGGAGGGCGAA GAAGCAACAATCAGTCATGAAAAAAATGTTTATCGTTTTCCCTCTTCCTT CCTCCCACCCTCCTTCCCTCCCTCAGGATCCGGAAGACTACGAGGGCAAG ACGTTCGAGCTGGCGGGGGAGAACAATTTCACTTGGCGAGAACTGATGGA TTTCACCCTGGATGTAAGGAGGGGGGGGGGAGGGAGGGAAAGAGGAAGGG AGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGAGAGTGAGAGAGGGAG AGAGGGAGAGAGGGGTGGTAGACATAGATCTCCGCAGGTGCTTGCCTAGT TTAAGTCAGGAGCAGGCGGATGAGAGACATCTTGGCCATTGATTCGACGT ACAATCTTTGGAGCCCTGTAGCTCAGTCCCTCCCTCACTCCTTCCCTCCC TTTCTCCCTCCTTCTCTCCCTTCCCTGAGACGTGCCCCAAACGCCCACGA CCTGGATCCGCCTCTAGGGGAGTCAAGGCCTCAAACCAAGCCCTTGAACT GACTCCCTCCCTCCCTCTCTCGCCCCCCCCCTTCCTTTCCCAGGTCACGT ATCAAAAACCGGAGATAGTGGACTTACCTCTGGCTGTGGGGGAGGTTGCC TCTCTTGCCCTGGAGCAGCTGCCCAACCCGGTGCTGACGGTGGATGATGC CAAGCTCATGTACGCAGGGAGGGAGGGAGGGAAGGAGGGAGGGGAGGGTG GGTGGTCGTTAAAGGCCTTCAACTAATGTCTGGAGGCTGACCACACCCTT ATATATCCTCTCTGACCTTCTTCCCTCTCCCTCCCTCCCTCCCTCCCTCC CTCCCTCCCTTAGGTCCACGGACGTCATCCTTGAGCCGTCTTCGAAAGCG ATGACCTTTAAAGACCTCGACATTAAGCCTACCCCGCTGGAGAAGGTGGC GTTCAACTACCTGTATAGGTGAGGAGGGAGGGATGGAGGGAGGGAGGGAA GGGACGGTGGGTAGGGGGTGTATTCAACTCACTGGATTACTTTTTGCATG GTTTTACAGGTATAGGACAGACGGCGGGCATTTCCCGTACGCGGAGGGGT ACCATTGA
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Coding sequence (CDS) from alignment at chr10:1073487..1076844+

>NO10G03720.1 ID=NO10G03720.1|Name=NO10G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr10:1073487..1076844+ (Nannochloropsis oceanica)
ATGGCCAGCACTCGCTTCCTTTCTCGAAGGGGCCTCAGTGGCGTTGCGGC
TGGGCAGCTCGAGAAGGGTTTCAAGGATTTTGGTCCCGGGGGACGCTCGT
CAGTGGCGGGCATCACAGCCTCTTTGTTTGGAGGCACCGGCTTCCTGGGT
AAATACCTGCAGTTCGAAATGGGCAAAGTGGGCTACCGCCTCTATCTTGC
GAACCGTGGGGATGAGCAGGACGTGCGCCCCTTCAAGGTGGCCTTTGACT
TGGGCCAGTGGGCCTCTATTCCGTACAGTATCAGGGACGAGGACTCTATC
AAGCGGGTACTGGAGGGAAGCGACGTGGCGATCAACTGCATCGGTAAATA
TTATGACACGAAGCACATGATTCCGTATCACCGCAACCGCGGGGGCAAGC
TGTCCAATGTCAATTTCCCCTTGGAAGAGATCCACATCGAGGCGCCGGCC
AGGCTCGCGGAGGTGGCCAAGTCGGTGGGTGTAGAGCATTTCCTCCACGT
GTCGGCTCTCGGGGCAGACCCGGAATCAAACGTCCGGTGGCTGGCGACCA
AGGGCAAGGGCGAGGAGGCTCTGAAGAGTGTGTTTCCCACGGCCACCATC
GTCCGCCCTGGACGACTTTTTGGGCCGGAAGACCGGCTCCTGAACTGGTT
TGCGCAGGCCGCGGAAGCCGGTATCGTCCCCCTTTTCAACGGCGGCGAGG
CTCTGCTCCAGCCAACGTACGTCTCGGATGTGGTTGATGCCATGATCAAG
ATCATCGAGGATCCGGAAGACTACGAGGGCAAGACGTTCGAGCTGGCGGG
GGAGAACAATTTCACTTGGCGAGAACTGATGGATTTCACCCTGGATGTCA
CGTATCAAAAACCGGAGATAGTGGACTTACCTCTGGCTGTGGGGGAGGTT
GCCTCTCTTGCCCTGGAGCAGCTGCCCAACCCGGTGCTGACGGTGGATGA
TGCCAAGCTCATGTCCACGGACGTCATCCTTGAGCCGTCTTCGAAAGCGA
TGACCTTTAAAGACCTCGACATTAAGCCTACCCCGCTGGAGAAGGTGGCG
TTCAACTACCTGTATAGGTATAGGACAGACGGCGGGCATTTCCCGTACGC
GGAGGGGTACCATTGA
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Synonyms
Publications