NO10G03710.1, NO10G03710.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03710.1
Unique Name	NO10G03710.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1873
Alignment location	chr10:1070744..1073173 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1070744..1073173 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G03710.1 vs.
Match: EWM25566.1 (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Nannochloropsis gaditana])

HSP 1 Score: 315.5 bits (807), Expect = 3.500e-82
Identity = 176/320 (55.00%), Postives = 225/320 (70.31%), Query Frame = 0

Query:   88 AASSSASATDTHTTIATTVTTLPTKK-----RGQQQHKAYVWGDIRWLQVPSSSSSPSYSSSTNAITTTPLPLPFTNVRALAFGPSFAAALLQDGSVQWKSAQTEKFMPLALPRGERAVKVECTSEKIYVLTSSGRVFFWSITRLIRRTVSSSSSSSPLSSPSPVPPSEYASLAAFSNSSS-----------------SSTIDSHVVITSLSAGHQHVLMTTAEGTVLGVGSNGQGQLGLPSSFSRVTLEEPRELPFFLPPSLPPSLRPVRVVAGHAHSFVVCMREGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWAS 386
            ++SSS+S++   ++ +++ T LPT +     + +QQ++AYVWGD RWLQ PSS+ S S       +TTTPL LPF +VR+LAFGPSFAA L +DG+V WKSA++  F+PLA+P GE A ++ CT + IY LT++GRVFFWS+  L+R   ++S++SSP SS +P  P E+ASLA    + +                 S    SHVVIT ++AGH HVLMTT +GTVLGVGSN QGQLG P++ +  T  EPRE+PFFLPPSLPPSLRP RV AGHAHSFVVC REGGREGG+E E+  VIY FGCDRWLQLGLG    S
Sbjct:   54 SSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSAS-------LTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFT--EPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLES 364

The following BLAST results are available for this feature:

BLAST of NO10G03710.1 vs.

BLAST of NO10G03710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25566.1	3.500e-82	55.00	Regulator of chromosome condensation/beta-lactamas...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G03710	NO10G03710	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03710.1	NO10G03710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03710.1.cds1	NO10G03710.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03710.1.cds2	NO10G03710.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03710.1.cds3	NO10G03710.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03710.1.cds4	NO10G03710.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03710.1.cds5	NO10G03710.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:1070744..1073173-
coding sequence from alignment at chr10:1070744..1073173-

mRNA sequence

>NO10G03710.1 ID=NO10G03710.1|Name=NO10G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1873bp
AAACAAACAGCACATAGACGATGCTTCGTCTAACCATTTACTCCTGTCGG
AAGGCCTCTGCAGCATCTGGACCTCGCCTTGGACGTGTCCTCTTCGGTTG
CAATACAGGTAAGTCGTGTACGTGTCATGATGATGGGCCACATCCCTTCA
AAGGAAATCATCGACCTTGCTTACTATGTCATCACTCCGCCGCCTTCCTA
GAAGACCACCAGCAGAGTATTGGTAGGGCTATAGTCGCTGCTGCTGCCAC
CGCAGCCGTGCTGGTGGTCTGCAACCCCCCTGCTGCCTCTTCGTCTGCCT
CTGCAACGGACACCCACACCACCATCGCCACCACCGTCACCACCCTCCCC
ACCAAGAAACGAGGACAACAACAGCACAAAGCCTATGTCTGGGGAGATAT
CCGCTGGCTCCAAGTTCCATCCTCCTCTTCCTCCCCCTCCTATTCTTCCT
CCACCAATGCCATTACCACCACCCCCCTCCCACTCCCCTTCACTAACGTC
CGCGCGCTTGCCTTCGGCCCTTCATTTGCCGCTGCTCTTCTACAGGACGG
GAGCGTACAATGGAAGAGCGCCCAAACCGAGAAATTTATGCCCTTGGCCT
TGCCTCGCGGAGAGCGAGCAGTAAAAGTGGAATGTACATCCGAAAAGATT
TACGTGCTCACATCGTCTGGTCGTGTCTTTTTTTGGTCCATCACTCGACT
TATCCGTCGAACAGTCTCCTCCTCCTCCTCCTCCTCCCCTTTGTCCTCAC
CCTCTCCTGTACCTCCTTCTGAATATGCGAGCTTAGCCGCCTTCTCCAAC
TCCTCCTCCTCCTCCACAATCGATTCGCATGTTGTCATCACCTCTCTCTC
AGCCGGACATCAGCATGTTCTCATGACGACTGCCGAAGGAACAGTACTGG
GTGTGGGCAGCAACGGTCAAGGCCAACTAGGTCTCCCTTCCTCCTTCAGC
AGGGTCACTCTTGAAGAACCACGCGAGCTCCCCTTCTTCCTCCCTCCCTC
TCTCCCTCCCTCCCTCCGTCCCGTCCGCGTCGTGGCCGGGCATGCTCACT
CCTTTGTGGTGTGCATGAGGGAGGGAGGAAGGGAGGGCGGGAAGGAGGTG
GAGGAAAGGAAGGTCATTTATGGCTTTGGATGCGACCGGTGGTTGCAGCT
GGGTCTTGGCGAAGCCTGGGCATCTCGTGGCGGCCCCCTCTGCTTCCGGC
CCCAACAACTCCACACCCTCTTCTCCCTCCCTCTCTCCCCCTCTTCCTCT
ACACTGACACTGCAATCTCTGGCAGCGGGGGGGGATCACTCCCTCTTCCT
CCTCCAGGGAGAAGGAGGGCGGGAGGGAGGGAAGGGGCAGAAGCTGTTGG
CGGCGGGGCATGGGCAGTGGGGCCAGCTGGGGACGAATCAACGAGTTCAC
GCAGGAGGCCCGTTGCAGGTCGCCTTCCCTTCCCGTGCGCCTATTTTGCA
AGTGGCTGTTGGGCGCGACCACTGCCTGCTCTTAACAGGAGAGAAAGAGG
GGGAGGGAGGGAGGGAGGGTGGGTGGGTGTATGGATGGGGGAGGAATCAG
AAGAGGCAGGCACATTATGCTTGTCCGTGTGAAGGGACGAAAGGGGACTT
GTTGCAGCCGGTGTTGGTGCCCTTGTTCGAGGTGGGGGGGGAAGAAGGAA
GAGAGGGAGGGGAGGGACGGGTGGAGGGGGTATATGCAGGGTATGATTCG
AGTGGCGTGGTGATATGTGAGCCAGGTCGGGAAGAAGGGAGGGGAGAGGA
ATAGAAAGGGAAAGTGGAGCCAGGAGTCGACGGCTGTAGGTGGGCCTGAG
AGTGATAAAGAAGGTCGGAGGCATGACGCATGGTCTAAGTTTGAGGTGAT
GGATTGGAAGGCAAGATACGAAG

protein sequence of NO10G03710.1

>NO10G03710.1-protein ID=NO10G03710.1-protein|Name=NO10G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MLRLTIYSCRKASAASGPRLGRVLFGCNTGKSCTCHDDGPHPFKGNHRPC
LLCHHSAAFLEDHQQSIGRAIVAAAATAAVLVVCNPPAASSSASATDTHT
TIATTVTTLPTKKRGQQQHKAYVWGDIRWLQVPSSSSSPSYSSSTNAITT
TPLPLPFTNVRALAFGPSFAAALLQDGSVQWKSAQTEKFMPLALPRGERA
VKVECTSEKIYVLTSSGRVFFWSITRLIRRTVSSSSSSSPLSSPSPVPPS
EYASLAAFSNSSSSSTIDSHVVITSLSAGHQHVLMTTAEGTVLGVGSNGQ
GQLGLPSSFSRVTLEEPRELPFFLPPSLPPSLRPVRVVAGHAHSFVVCMR
EGGREGGKEVEERKVIYGFGCDRWLQLGLGEAWASRGGPLCFRPQQLHTL
FSLPLSPSSSTLTLQSLAAGGDHSLFLLQGEGGREGGKGQKLLAAGHGQW
GQLGTNQRVHAGGPLQVAFPSRAPILQVAVGRDHCLLLTGEKEGEGGREG
GWVYGWGRNQKRQAHYACPCEGTKGDLLQPVLVPLFEVGGEEGREGGEGR
VEGVYAGYDSSGVVICEPGREEGRGEE*

mRNA from alignment at chr10:1070744..1073173-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G03710.1 ID=NO10G03710.1|Name=NO10G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr10:1070744..1073173- (Nannochloropsis oceanica)
AAACAAACAGCACATAGACGATGCTTCGTCTAACCATTTACTCCTGTCGG
AAGGCCTCTGCAGCATCTGGACCTCGCCTTGGACGTGTCCTCTTCGGTTG
CAATACAGGTAAGTCGTGTACGTGTCATGATGATGGGCCACATCCCTTCA
AAGGAAATCATCGACCTTGCTTACTATGTCATCACTCCGCCGCCTTCCTA
GAAGACCACCAGCAGAGTATTGGTAGGGCTATAGTCGCTGCTGCTGCCAC
CGCAGCCGTGCTGGTGGTCTGCAACCCCCCTGCTGCCTCTTCGTCTGCCT
CTGCAACGGACACCCACACCACCATCGCCACCACCGTCACCACCCTCCCC
ACCAAGAAACGAGGACAACAACAGCACAAAGCCTATGTCTGGGGAGATAT
CCGCTGGCTCCAAGTTCCATCCTCCTCTTCCTCCCCCTCCTATTCTTCCT
CCACCAATGCCATTACCACCACCCCCCTCCCACTCCCCTTCACTAACGTC
CGCGCGCTTGCCTTCGGCCCTTCATTTGCCGCTGCTCTTCTACAGGACGG
GAGCGTACAATGGAAGAGCGCCCAAACCGAGAAATTTATGCCCTTGGCCT
TGCCTCGCGGAGAGCGAGCAGTAAAAGTGGAATGTACATCCGAAAAGGTA
AGATGTCGTTGGGTTGTTACATCCATTGGTTATGACGTAGAAGGACTTTC
GGCGTCTCGACCTAAGACCCCAGTGATCTTTGCCATTCTCTAATTTTCAG
CTCAATCATTCCCTGCTCCCCTCCTCTCTCTCTTTCTCTATTATCCTTCC
TCCCTTCCTTCTTTCCTCCTCCTCCCTCCACAAGATTTACGTGCTCACAT
CGTCTGGTCGTGTCTTTTTTTGGTCCATCACTCGACTTATCCGTCGAACA
GTCTCCTCCTCCTCCTCCTCCTCCCCTTTGTCCTCACCCTCTCCTGTACC
TCCTTCTGAATATGCGAGCTTAGCCGCCTTCTCCAACTCCTCCTCCTCCT
CCACAATCGATTCGCATGTTGTCATCACCTCTCTCTCAGCCGGACATCAG
CATGTTCTCATGACGACTGCCGAAGGAACAGTGTACGTATGCTTGACCCC
TCTCTCCCTCCCTCCCTCCCTTCTCGGTACTTTACAATGCCTCCTGCTGT
CTCAACCCTCCCTCCCTCCCTCTAGACTGGGTGTGGGCAGCAACGGTCAA
GGCCAACTAGGTCTCCCTTCCTCCTTCAGCAGGGTCACTCTTGAAGAACC
ACGCGAGCTCCCCTTCTTCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGTC
CCGTCCGCGTCGTGGCCGGGCATGCTCACTCCTTTGTGGTGTGCATGAGG
GAGGGAGGAAGGGAGGGCGGGAAGGAGGTGGAGGAAAGGAAGGTCATTTA
TGGCTTTGGATGCGACCGGTGGTTGCAGCTGGGTCTTGGTACGTCCCGAT
GGGCCTTTTCTCCCTCCCTCTCTCCCTCCTTCTCATTCTCTTCTTCACTT
CATCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTCCCTCCTTCCTCACAGGCGAAGCCTGGGCATCTC
GTGGCGGCCCCCTCTGCTTCCGGCCCCAACAACTCCACACCCTCTTCTCC
CTCCCTCTCTCCCCCTCTTCCTCTACACTGACACTGCAATCTCTGGCAGC
GGGGGGGGATCACTCCCTCTTCCTCCTCCAGGGAGAAGGAGGGCGGGAGG
GAGGGAAGGGGCAGAAGCTGTTGGCGGCGGGGCATGGGCAGTGGGGCCAG
CTGGGGACGAATCAACGAGTTCACGCAGGAGGCCCGTTGCAGGTACGTAG
GAAAGAAGGGAGGGAGGCTGGGAGGCTGGGAGGGGAAGGAGTGGTTATTG
AGCGTTCTTCTTGTCTGTTTCTGAGTCATTCAGGATATATCCTTCCCTGC
CTCCCTTCCTCCCTCCCTCCCTTAGGTCGCCTTCCCTTCCCGTGCGCCTA
TTTTGCAAGTGGCTGTTGGGCGCGACCACTGCCTGCTCTTAACAGGAGAG
AAAGAGGGGGAGGGAGGGAGGGAGGGTGGGTGGGTGTATGGATGGGGGAG
GAATCAGAAGAGGCAGGCACATTATGCTTGTCCGTGTGAAGGGACGAAAG
GGGACTTGTTGCAGCCGGTGTTGGTGCCCTTGTTCGAGGTGGGGGGGGAA
GAAGGAAGAGAGGGAGGGGAGGGACGGGTGGAGGGGGTATATGCAGGGTA
TGATTCGAGTGGCGTGGTGATATGTGAGCCAGGTCGGGAAGAAGGGAGGG
GAGAGGAATAGAAAGGGAAAGTGGAGCCAGGAGTCGACGGCTGTAGGTGG
GCCTGAGAGTGATAAAGAAGGTCGGAGGCATGACGCATGGTCTAAGTTTG
AGGTGATGGATTGGAAGGCAAGATACGAAG

Coding sequence (CDS) from alignment at chr10:1070744..1073173-

>NO10G03710.1 ID=NO10G03710.1|Name=NO10G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr10:1070744..1073173- (Nannochloropsis oceanica)
ATGCTTCGTCTAACCATTTACTCCTGTCGGAAGGCCTCTGCAGCATCTGG
ACCTCGCCTTGGACGTGTCCTCTTCGGTTGCAATACAGGTAAGTCGTGTA
CGTGTCATGATGATGGGCCACATCCCTTCAAAGGAAATCATCGACCTTGC
TTACTATGTCATCACTCCGCCGCCTTCCTAGAAGACCACCAGCAGAGTAT
TGGTAGGGCTATAGTCGCTGCTGCTGCCACCGCAGCCGTGCTGGTGGTCT
GCAACCCCCCTGCTGCCTCTTCGTCTGCCTCTGCAACGGACACCCACACC
ACCATCGCCACCACCGTCACCACCCTCCCCACCAAGAAACGAGGACAACA
ACAGCACAAAGCCTATGTCTGGGGAGATATCCGCTGGCTCCAAGTTCCAT
CCTCCTCTTCCTCCCCCTCCTATTCTTCCTCCACCAATGCCATTACCACC
ACCCCCCTCCCACTCCCCTTCACTAACGTCCGCGCGCTTGCCTTCGGCCC
TTCATTTGCCGCTGCTCTTCTACAGGACGGGAGCGTACAATGGAAGAGCG
CCCAAACCGAGAAATTTATGCCCTTGGCCTTGCCTCGCGGAGAGCGAGCA
GTAAAAGTGGAATGTACATCCGAAAAGATTTACGTGCTCACATCGTCTGG
TCGTGTCTTTTTTTGGTCCATCACTCGACTTATCCGTCGAACAGTCTCCT
CCTCCTCCTCCTCCTCCCCTTTGTCCTCACCCTCTCCTGTACCTCCTTCT
GAATATGCGAGCTTAGCCGCCTTCTCCAACTCCTCCTCCTCCTCCACAAT
CGATTCGCATGTTGTCATCACCTCTCTCTCAGCCGGACATCAGCATGTTC
TCATGACGACTGCCGAAGGAACAGTACTGGGTGTGGGCAGCAACGGTCAA
GGCCAACTAGGTCTCCCTTCCTCCTTCAGCAGGGTCACTCTTGAAGAACC
ACGCGAGCTCCCCTTCTTCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGTC
CCGTCCGCGTCGTGGCCGGGCATGCTCACTCCTTTGTGGTGTGCATGAGG
GAGGGAGGAAGGGAGGGCGGGAAGGAGGTGGAGGAAAGGAAGGTCATTTA
TGGCTTTGGATGCGACCGGTGGTTGCAGCTGGGTCTTGGCGAAGCCTGGG
CATCTCGTGGCGGCCCCCTCTGCTTCCGGCCCCAACAACTCCACACCCTC
TTCTCCCTCCCTCTCTCCCCCTCTTCCTCTACACTGACACTGCAATCTCT
GGCAGCGGGGGGGGATCACTCCCTCTTCCTCCTCCAGGGAGAAGGAGGGC
GGGAGGGAGGGAAGGGGCAGAAGCTGTTGGCGGCGGGGCATGGGCAGTGG
GGCCAGCTGGGGACGAATCAACGAGTTCACGCAGGAGGCCCGTTGCAGGT
CGCCTTCCCTTCCCGTGCGCCTATTTTGCAAGTGGCTGTTGGGCGCGACC
ACTGCCTGCTCTTAACAGGAGAGAAAGAGGGGGAGGGAGGGAGGGAGGGT
GGGTGGGTGTATGGATGGGGGAGGAATCAGAAGAGGCAGGCACATTATGC
TTGTCCGTGTGAAGGGACGAAAGGGGACTTGTTGCAGCCGGTGTTGGTGC
CCTTGTTCGAGGTGGGGGGGGAAGAAGGAAGAGAGGGAGGGGAGGGACGG
GTGGAGGGGGTATATGCAGGGTATGATTCGAGTGGCGTGGTGATATGTGA
GCCAGGTCGGGAAGAAGGGAGGGGAGAGGAATAG

Synonyms

Publications