NO10G03700.1, NO10G03700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03700.1
Unique NameNO10G03700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr10:1065602..1066780 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1065602..1066780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03700.1 vs.
Match: EWM25562.1 (Guanylyl cyclase [Nannochloropsis gaditana])

HSP 1 Score: 298.9 bits (764), Expect = 2.300e-77
Identity = 204/447 (45.64%), Postives = 264/447 (59.06%), Query Frame = 0 
Query:    1 MGSNESRASITSPAPATST--TISSSPAFDKGRDLYGGAIELQRDLLALLSRLSNTREDD---------GGRRD--DESDSKAMKNVVRTKEKETHIRSQHILQQASWDCGVACLQMILTYAATSGAARSSSSPSFPPPTRDALVAQVGTDSIWTVDLLFLLQQYVNRTQREVFFTTIAPGVCSHYSTLAYYNKGGQFASDRDRVLRLFCAAKNKGLRIYEGRISWESLRDLLCTGRVLIILLVNQKALPSS---------LPPPPSTVLQSQQQQPPPPVAAPTSITPTYDTS-----------SDTGVTTMM---------------ATIPAAAAAPLLSSSLSTTYCGHYILLTGFRPAS------SSSPSSSSSFS-EGFFIYKDPAKPPSSPSSPKGERGRKDRREDGREDDLGGDFLISVAALEKARKAEGTDEDVLVVEV 393
            MGSN SR++ T+ +   ST  T SSSP+ +   DLYGG  EL+ DL  ++ RL    +++         G RR   +E  S A   V   +   TH+  QHI QQA+WDCG+ACLQMILT+ A S    S S P    P+RDAL+A+VGT SIWT+DLL+LL+ Y+  +QR VF  T +PGVC  ++TL+YY K GQF  DR RVLRLF AA   GLR+YEG +SWE LRDL+CTGRVL++LLV+Q+ LPSS         LP  P     S   +P    A+ +S  P + +            S+TG ++                 +++P+   A    SS ST YCGHYIL+TG+RPAS      SS PSS S+ S  GFF+YKDPAK P SP   +G+RG        RE +   D LI V+ LE+AR+AEGTDED+LVVEV
Sbjct:    1 MGSNVSRSTSTTDSTTASTGFTSSSSPS-NNVVDLYGGTKELKDDLSTIIVRLRGVSDEEDRAIPTRNGGDRRTVREEVHSTANARVGHIERGGTHLCLQHIPQQATWDCGIACLQMILTHVAASAPFSSLSIP----PSRDALLARVGTRSIWTIDLLYLLKPYLTGSQRAVFLVTASPGVCVRHATLSYYTKSGQFGVDRQRVLRLFRAAPGNGLRVYEGSLSWEDLRDLVCTGRVLLVLLVDQRLLPSSSSLPSAPPSLPSSPPPGASSVTPKPLTTEASSSSSIPIFSSDERQPQHEQGPHSETGASSSSMGSPSCHALNADPPSSSLPSLPLALPPPSSSSTAYCGHYILITGYRPASPPPCLPSSPPSSPSTTSGAGFFLYKDPAKAPLSPGEQEGKRGT-------REQEWCKDRLIEVSVLERARRAEGTDEDILVVEV 435
The following BLAST results are available for this feature:
BLAST of NO10G03700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25562.12.300e-7745.64Guanylyl cyclase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03700NO10G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03700.1NO10G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03700.1.cds1NO10G03700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03700.1 ID=NO10G03700.1|Name=NO10G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGGGCAGCAACGAGTCTCGCGCCAGCATCACCTCTCCTGCTCCCGCGAC
ATCTACGACTATCTCATCTTCCCCCGCCTTTGACAAGGGCAGAGATCTGT
ATGGTGGGGCGATAGAGCTGCAGCGGGACTTGCTTGCCCTCCTTTCGCGC
CTAAGCAATACTCGGGAGGACGACGGCGGAAGAAGAGATGATGAAAGTGA
CAGCAAAGCAATGAAAAATGTAGTAAGAACGAAAGAGAAAGAGACACACA
TCCGCTCGCAACACATCTTGCAGCAAGCCAGTTGGGACTGTGGTGTTGCC
TGTCTTCAAATGATACTCACCTACGCCGCCACTTCCGGAGCTGCTCGCTC
CTCATCCTCCCCTTCCTTCCCCCCTCCCACTCGCGACGCCCTTGTGGCTC
AAGTAGGGACTGATTCCATATGGACGGTCGACTTGCTCTTCCTCCTCCAA
CAGTACGTCAACAGAACGCAACGTGAGGTCTTCTTCACCACCATCGCTCC
CGGGGTCTGCTCCCATTATTCGACCCTTGCCTATTATAACAAAGGAGGGC
AGTTCGCGAGTGATCGGGACAGAGTCCTTCGCCTCTTTTGCGCGGCTAAG
AACAAAGGCCTTAGGATCTATGAGGGGAGAATCTCTTGGGAATCTTTGCG
AGACTTGCTATGCACAGGAAGAGTGTTGATTATCTTGCTGGTGAATCAAA
AGGCACTCCCTTCTTCCCTCCCTCCTCCCCCTTCTACGGTCCTGCAGTCG
CAGCAGCAGCAGCCGCCGCCACCGGTAGCAGCTCCTACATCAATTACACC
CACATATGACACCAGCAGCGATACGGGAGTGACAACTATGATGGCCACTA
TACCAGCTGCTGCTGCTGCACCTCTTCTGTCGTCCTCCCTCTCCACGACC
TACTGCGGCCATTACATCCTCCTCACAGGCTTTCGCCCTGCATCGTCCTC
CTCCCCATCCTCCTCATCTTCCTTCTCTGAAGGTTTCTTTATCTACAAAG
ACCCAGCGAAGCCTCCATCCTCACCAAGCTCACCCAAGGGGGAGAGAGGG
AGGAAGGACAGGAGGGAAGACGGGAGGGAGGACGATTTGGGTGGGGACTT
TCTGATAAGTGTGGCGGCGTTGGAGAAGGCGAGGAAGGCGGAAGGTACGG
ATGAGGATGTGTTGGTGGTGGAGGTGTGA
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protein sequence of NO10G03700.1

>NO10G03700.1-protein ID=NO10G03700.1-protein|Name=NO10G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MGSNESRASITSPAPATSTTISSSPAFDKGRDLYGGAIELQRDLLALLSR
LSNTREDDGGRRDDESDSKAMKNVVRTKEKETHIRSQHILQQASWDCGVA
CLQMILTYAATSGAARSSSSPSFPPPTRDALVAQVGTDSIWTVDLLFLLQ
QYVNRTQREVFFTTIAPGVCSHYSTLAYYNKGGQFASDRDRVLRLFCAAK
NKGLRIYEGRISWESLRDLLCTGRVLIILLVNQKALPSSLPPPPSTVLQS
QQQQPPPPVAAPTSITPTYDTSSDTGVTTMMATIPAAAAAPLLSSSLSTT
YCGHYILLTGFRPASSSSPSSSSSFSEGFFIYKDPAKPPSSPSSPKGERG
RKDRREDGREDDLGGDFLISVAALEKARKAEGTDEDVLVVEV*
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mRNA from alignment at chr10:1065602..1066780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03700.1 ID=NO10G03700.1|Name=NO10G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at chr10:1065602..1066780+ (Nannochloropsis oceanica)
ATGGGCAGCAACGAGTCTCGCGCCAGCATCACCTCTCCTGCTCCCGCGAC
ATCTACGACTATCTCATCTTCCCCCGCCTTTGACAAGGGCAGAGATCTGT
ATGGTGGGGCGATAGAGCTGCAGCGGGACTTGCTTGCCCTCCTTTCGCGC
CTAAGCAATACTCGGGAGGACGACGGCGGAAGAAGAGATGATGAAAGTGA
CAGCAAAGCAATGAAAAATGTAGTAAGAACGAAAGAGAAAGAGACACACA
TCCGCTCGCAACACATCTTGCAGCAAGCCAGTTGGGACTGTGGTGTTGCC
TGTCTTCAAATGATACTCACCTACGCCGCCACTTCCGGAGCTGCTCGCTC
CTCATCCTCCCCTTCCTTCCCCCCTCCCACTCGCGACGCCCTTGTGGCTC
AAGTAGGGACTGATTCCATATGGACGGTCGACTTGCTCTTCCTCCTCCAA
CAGTACGTCAACAGAACGCAACGTGAGGTCTTCTTCACCACCATCGCTCC
CGGGGTCTGCTCCCATTATTCGACCCTTGCCTATTATAACAAAGGAGGGC
AGTTCGCGAGTGATCGGGACAGAGTCCTTCGCCTCTTTTGCGCGGCTAAG
AACAAAGGCCTTAGGATCTATGAGGGGAGAATCTCTTGGGAATCTTTGCG
AGACTTGCTATGCACAGGAAGAGTGTTGATTATCTTGCTGGTGAATCAAA
AGGCACTCCCTTCTTCCCTCCCTCCTCCCCCTTCTACGGTCCTGCAGTCG
CAGCAGCAGCAGCCGCCGCCACCGGTAGCAGCTCCTACATCAATTACACC
CACATATGACACCAGCAGCGATACGGGAGTGACAACTATGATGGCCACTA
TACCAGCTGCTGCTGCTGCACCTCTTCTGTCGTCCTCCCTCTCCACGACC
TACTGCGGCCATTACATCCTCCTCACAGGCTTTCGCCCTGCATCGTCCTC
CTCCCCATCCTCCTCATCTTCCTTCTCTGAAGGTTTCTTTATCTACAAAG
ACCCAGCGAAGCCTCCATCCTCACCAAGCTCACCCAAGGGGGAGAGAGGG
AGGAAGGACAGGAGGGAAGACGGGAGGGAGGACGATTTGGGTGGGGACTT
TCTGATAAGTGTGGCGGCGTTGGAGAAGGCGAGGAAGGCGGAAGGTACGG
ATGAGGATGTGTTGGTGGTGGAGGTGTGA
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Coding sequence (CDS) from alignment at chr10:1065602..1066780+

>NO10G03700.1 ID=NO10G03700.1|Name=NO10G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr10:1065602..1066780+ (Nannochloropsis oceanica)
ATGGGCAGCAACGAGTCTCGCGCCAGCATCACCTCTCCTGCTCCCGCGAC
ATCTACGACTATCTCATCTTCCCCCGCCTTTGACAAGGGCAGAGATCTGT
ATGGTGGGGCGATAGAGCTGCAGCGGGACTTGCTTGCCCTCCTTTCGCGC
CTAAGCAATACTCGGGAGGACGACGGCGGAAGAAGAGATGATGAAAGTGA
CAGCAAAGCAATGAAAAATGTAGTAAGAACGAAAGAGAAAGAGACACACA
TCCGCTCGCAACACATCTTGCAGCAAGCCAGTTGGGACTGTGGTGTTGCC
TGTCTTCAAATGATACTCACCTACGCCGCCACTTCCGGAGCTGCTCGCTC
CTCATCCTCCCCTTCCTTCCCCCCTCCCACTCGCGACGCCCTTGTGGCTC
AAGTAGGGACTGATTCCATATGGACGGTCGACTTGCTCTTCCTCCTCCAA
CAGTACGTCAACAGAACGCAACGTGAGGTCTTCTTCACCACCATCGCTCC
CGGGGTCTGCTCCCATTATTCGACCCTTGCCTATTATAACAAAGGAGGGC
AGTTCGCGAGTGATCGGGACAGAGTCCTTCGCCTCTTTTGCGCGGCTAAG
AACAAAGGCCTTAGGATCTATGAGGGGAGAATCTCTTGGGAATCTTTGCG
AGACTTGCTATGCACAGGAAGAGTGTTGATTATCTTGCTGGTGAATCAAA
AGGCACTCCCTTCTTCCCTCCCTCCTCCCCCTTCTACGGTCCTGCAGTCG
CAGCAGCAGCAGCCGCCGCCACCGGTAGCAGCTCCTACATCAATTACACC
CACATATGACACCAGCAGCGATACGGGAGTGACAACTATGATGGCCACTA
TACCAGCTGCTGCTGCTGCACCTCTTCTGTCGTCCTCCCTCTCCACGACC
TACTGCGGCCATTACATCCTCCTCACAGGCTTTCGCCCTGCATCGTCCTC
CTCCCCATCCTCCTCATCTTCCTTCTCTGAAGGTTTCTTTATCTACAAAG
ACCCAGCGAAGCCTCCATCCTCACCAAGCTCACCCAAGGGGGAGAGAGGG
AGGAAGGACAGGAGGGAAGACGGGAGGGAGGACGATTTGGGTGGGGACTT
TCTGATAAGTGTGGCGGCGTTGGAGAAGGCGAGGAAGGCGGAAGGTACGG
ATGAGGATGTGTTGGTGGTGGAGGTGTGA
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Synonyms
Publications