NO10G03410.1, NO10G03410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03410.1
Unique NameNO10G03410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr10:961387..962913 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:961387..962913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03410.1 vs.
Match: XP_020677938.1 (random slug protein 5-like isoform X3 [Dendrobium catenatum]; PKU79568.1 Patellin-5 [Dendrobium catenatum])

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-15
Identity = 59/210 (28.10%), Postives = 97/210 (46.19%), Query Frame = 0 
Query:   79 IKKSYSGADGLPDHELRNFLIYMQGDPSKAGERIDRCLSWRRTHLP---IDRSTIQLALNQRLFFFQGKDRACRPVGYFRLQGHDRKKRNLEQYVRAVVYVSEALVKRMGGSDYRVTLVIDRRGANLFNQDLELYKAFFKTFGELYPMKLFRVILYPATTMTRVLWSMLRPFVHSHVQRRLALVSD---LADFAPYIDKDQLLLSLGGAL 283
            +++  S A  L D  L+ FL     D  +A   + + LSWRR ++P   I  S IQ  + Q+  F QG D+  RP+       H+   R+L ++ R   Y+ E L  RM G + + T++ D +G    N D+  Y A        YP +L +++L     +    W ++ PF+  + + ++  V D   +      ID+ QL    GG L
Sbjct:   20 VERKDSNAKDLDDSTLKRFLRARDLDVDRASNFLLKHLSWRRENIPKGFISESEIQNEIAQKKIFSQGFDKNGRPIAVLFGCRHNPSNRDLNEFKRFAAYILEKLCSRMQGKEEKFTIIADLKGWGYSNCDIRAYIAALDILQNNYPERLGKLLLLHVPYLFMKAWKIICPFIDKNTKSKIIFVEDKNKMTTLLEDIDESQLPEQYGGRL 229
The following BLAST results are available for this feature:
BLAST of NO10G03410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_020677938.11.500e-1528.10random slug protein 5-like isoform X3 [Dendrobium ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03410NO10G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03410.1NO10G03410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03410.1.cds1NO10G03410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03410.1.cds2NO10G03410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03410.1 ID=NO10G03410.1|Name=NO10G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
TGAAGACCTGAACGAGTGGGAGAAGCCGTGCGGCCTTAAACGACGATTTG
ATTTTTGGTGTACCGTTAAAAACACCGATACAGATCCAAGCACGTGCGCG
ATATTCCTTCCAGGCACATGGCAGGGCATGTGCCTCGACATCTTTGATCA
TTACGCCCAATATATAGTATGTCAAGGCTTTCCGCTTCTTTCATCCTTTT
TGATTTCTTCGTGGTACCCCCCAAACTCAGTACCTCCCCTACCACAACCA
CCATCTCGAAGCCTCAAAGCCGATAATGGTCGCCCTCAAAAATATCACCC
AAGATCGGGCCGGGCCTATCACTGTGGATATTGTTCTGCTGGATAATGAG
GTAGAGCTGGAGATTCAGACCCGCTCCCATCTCCTGAAGGACGACGATGC
CGGCAAGGAGAGCCTCGCCTTGTCTTGTCTCACCCCTGCCACCCGCGAGG
ACCCCGACGTGCTGCCTGAGGAACGGTGGAATGAGGCCTGGCAAAGTCAC
CTAGATCACATCAAGAAATCCTACTCCGGCGCTGACGGCCTTCCAGACCA
CGAGTTGCGCAATTTTTTGATCTACATGCAAGGAGATCCTAGCAAGGCAG
GTGAACGTATCGACAGATGCCTTTCCTGGCGCCGCACCCACCTTCCCATT
GACCGCTCAACCATTCAGCTCGCATTGAATCAGCGCCTCTTCTTTTTTCA
AGGCAAGGACAGGGCGTGCCGTCCTGTTGGATACTTTCGCCTGCAGGGCC
ATGATCGCAAGAAGCGTAATTTGGAGCAGTATGTGCGTGCGGTGGTGTAT
GTGTCCGAGGCACTGGTGAAGCGTATGGGAGGGAGCGACTATCGTGTCAC
CCTGGTCATCGATCGCCGCGGGGCCAATTTATTTAACCAAGACTTGGAGC
TGTACAAAGCTTTTTTCAAAACCTTTGGGGAACTATATCCGATGAAGCTC
TTCCGTGTCATTCTGTACCCGGCCACCACCATGACGCGTGTGCTCTGGTC
GATGCTCCGCCCTTTCGTCCATAGCCATGTGCAGCGACGCTTGGCCTTGG
TATCAGACCTGGCAGATTTTGCTCCCTACATAGATAAGGATCAACTGTTG
TTGTCACTGGGTGGAGCATTGCCGGACATGGACGAGGATGATGCATTGGC
GGTGGAGGAAGTGAAGGAGTCTTAGGACACGGGGGAGCTGTGAGAGCGAG
GACAAGGAATGGAGAAGGAAGGCGCTGATAAAACGGGTATGGCTGGTAAA
AATGTATGAATACTGCCATAGAGGAGGACAAGCCGACTATTGACGAGAAA
GAAACATGGAAAACACAAAGAATAAAAAAAGAACAAAAAAACGAAAATCG
TCAGATGTGGAAGCCATGTCCAGAGAATCGGTTGCGGTTCGCCGTAATTT
GATCTTCCCTCAT
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protein sequence of NO10G03410.1

>NO10G03410.1-protein ID=NO10G03410.1-protein|Name=NO10G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MVALKNITQDRAGPITVDIVLLDNEVELEIQTRSHLLKDDDAGKESLALS
CLTPATREDPDVLPEERWNEAWQSHLDHIKKSYSGADGLPDHELRNFLIY
MQGDPSKAGERIDRCLSWRRTHLPIDRSTIQLALNQRLFFFQGKDRACRP
VGYFRLQGHDRKKRNLEQYVRAVVYVSEALVKRMGGSDYRVTLVIDRRGA
NLFNQDLELYKAFFKTFGELYPMKLFRVILYPATTMTRVLWSMLRPFVHS
HVQRRLALVSDLADFAPYIDKDQLLLSLGGALPDMDEDDALAVEEVKES*
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mRNA from alignment at chr10:961387..962913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03410.1 ID=NO10G03410.1|Name=NO10G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp|location=Sequence derived from alignment at chr10:961387..962913- (Nannochloropsis oceanica)
TGAAGACCTGAACGAGTGGGAGAAGCCGTGCGGCCTTAAACGACGATTTG
ATTTTTGGTGTACCGTTAAAAACACCGATACAGATCCAAGCACGTGCGCG
ATATTCCTTCCAGGCACATGGCAGGGCATGTGCCTCGACATCTTTGATCA
TTACGCCCAATATATAGTATGTCAAGGCTTTCCGCTTCTTTCATCCTTTT
TGATTTCTTCGTGGTACCCCCCAAACTCAGTACCTCCCCTACCACAACCA
CCATCTCGAAGCCTCAAAGCCGATAATGGTCGCCCTCAAAAATATCACCC
AAGATCGGGCCGGGCCTATCACTGTGGATATTGTTCTGCTGGATAATGAG
GTAGAGCTGGAGATTCAGACCCGCTCCCATCTCCTGAAGGACGACGATGC
CGGCAAGGAGAGCCTCGCCTTGTCTTGTCTCACCCCTGCCACCCGCGAGG
ACCCCGACGTGCTGCCTGAGGAACGGTGGAATGAGGCCTGGCAAAGTCAC
CTAGATCACATCAAGGTATACATTACAGGGAAAAGCGTGACTTGATTGAT
GAATCCATGTGCCCTGCCATTCCCACACACACAAAGTTGACCAACTTAAA
ACCGGCTCAAACTCATCTGTACTACATAGAAATCCTACTCCGGCGCTGAC
GGCCTTCCAGACCACGAGTTGCGCAATTTTTTGATCTACATGCAAGGAGA
TCCTAGCAAGGCAGGTGAACGTATCGACAGATGCCTTTCCTGGCGCCGCA
CCCACCTTCCCATTGACCGCTCAACCATTCAGCTCGCATTGAATCAGCGC
CTCTTCTTTTTTCAAGGCAAGGACAGGGCGTGCCGTCCTGTTGGATACTT
TCGCCTGCAGGGCCATGATCGCAAGAAGCGTAATTTGGAGCAGTATGTGC
GTGCGGTGGTGTATGTGTCCGAGGCACTGGTGAAGCGTATGGGAGGGAGC
GACTATCGTGTCACCCTGGTCATCGATCGCCGCGGGGCCAATTTATTTAA
CCAAGACTTGGAGCTGTACAAAGCTTTTTTCAAAACCTTTGGGGAACTAT
ATCCGATGAAGCTCTTCCGTGTCATTCTGTACCCGGCCACCACCATGACG
CGTGTGCTCTGGTCGATGCTCCGCCCTTTCGTCCATAGCCATGTGCAGCG
ACGCTTGGCCTTGGTATCAGACCTGGCAGATTTTGCTCCCTACATAGATA
AGGATCAACTGTTGTTGTCACTGGGTGGAGCATTGCCGGACATGGACGAG
GATGATGCATTGGCGGTGGAGGAAGTGAAGGAGTCTTAGGACACGGGGGA
GCTGTGAGAGCGAGGACAAGGAATGGAGAAGGAAGGCGCTGATAAAACGG
GTATGGCTGGTAAAAATGTATGAATACTGCCATAGAGGAGGACAAGCCGA
CTATTGACGAGAAAGAAACATGGAAAACACAAAGAATAAAAAAAGAACAA
AAAAACGAAAATCGTCAGATGTGGAAGCCATGTCCAGAGAATCGGTTGCG
GTTCGCCGTAATTTGATCTTCCCTCAT
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Coding sequence (CDS) from alignment at chr10:961387..962913-

>NO10G03410.1 ID=NO10G03410.1|Name=NO10G03410.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr10:961387..962913- (Nannochloropsis oceanica)
ATGGTCGCCCTCAAAAATATCACCCAAGATCGGGCCGGGCCTATCACTGT
GGATATTGTTCTGCTGGATAATGAGGTAGAGCTGGAGATTCAGACCCGCT
CCCATCTCCTGAAGGACGACGATGCCGGCAAGGAGAGCCTCGCCTTGTCT
TGTCTCACCCCTGCCACCCGCGAGGACCCCGACGTGCTGCCTGAGGAACG
GTGGAATGAGGCCTGGCAAAGTCACCTAGATCACATCAAGAAATCCTACT
CCGGCGCTGACGGCCTTCCAGACCACGAGTTGCGCAATTTTTTGATCTAC
ATGCAAGGAGATCCTAGCAAGGCAGGTGAACGTATCGACAGATGCCTTTC
CTGGCGCCGCACCCACCTTCCCATTGACCGCTCAACCATTCAGCTCGCAT
TGAATCAGCGCCTCTTCTTTTTTCAAGGCAAGGACAGGGCGTGCCGTCCT
GTTGGATACTTTCGCCTGCAGGGCCATGATCGCAAGAAGCGTAATTTGGA
GCAGTATGTGCGTGCGGTGGTGTATGTGTCCGAGGCACTGGTGAAGCGTA
TGGGAGGGAGCGACTATCGTGTCACCCTGGTCATCGATCGCCGCGGGGCC
AATTTATTTAACCAAGACTTGGAGCTGTACAAAGCTTTTTTCAAAACCTT
TGGGGAACTATATCCGATGAAGCTCTTCCGTGTCATTCTGTACCCGGCCA
CCACCATGACGCGTGTGCTCTGGTCGATGCTCCGCCCTTTCGTCCATAGC
CATGTGCAGCGACGCTTGGCCTTGGTATCAGACCTGGCAGATTTTGCTCC
CTACATAGATAAGGATCAACTGTTGTTGTCACTGGGTGGAGCATTGCCGG
ACATGGACGAGGATGATGCATTGGCGGTGGAGGAAGTGAAGGAGTCTTAG
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Synonyms
Publications