NO10G03200.1, NO10G03200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03200.1
Unique NameNO10G03200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr10:901175..902284 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:901175..902284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03200.1 vs.
Match: XP_005852795.1 (bis(5'-adenosyl)-triphosphatase [Nannochloropsis gaditana CCMP526]; EKU23040.1 bis(5'-adenosyl)-triphosphatase [Nannochloropsis gaditana CCMP526]; EWM25536.1 bis(5 -adenosyl)-triphosphatase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 260.4 bits (664), Expect = 6.000e-66
Identity = 146/246 (59.35%), Postives = 172/246 (69.92%), Query Frame = 0 
Query:   20 SVSLSTVVPRRHRFRATAAAAAATATALLCFPGVTSFTVAPPLRPRGHPHFHPG--PILLRMYSSSSNG-------VRSSSSSPPLPSPLLFGPYKISADQVFYQSAYSTAIVNLKPLVPCHILVLPYRVVDRFADLRPEEVSDLYLAVHEIGPVLERINGGEGLTISMQDGKAAGQTVPHVHVHVLPRKEGDFTPNDQVYEALDGVQLHKHFDLDIERRPRTEEDMAAEARWLRAFFPPERQPRA 257
            S+  S  + RR + +      A  ATA+   P V SF  A   R  G     P   P +    SS++ G       + S+ + PPLPSPL FGPY+I+ DQVF+QS +S AIVNLKPLVPCH+L+LPYRVV+RF+DLRPEEVSDLY AVHEIGPVL+     +GLTISMQDGKAAGQTVPHVHVHVLPR EGDFTPND+VYE L+ V L KHFDLD+ERRPRT+ +MAAEA  LR  F P RQ RA
Sbjct:    2 SLPYSAALLRRCQNKRRITVTAVAATAVFGLPTVASFAFAS--RHVGQYQHLPNLIPRVSSPMSSTAIGCNDRPASLSSALAPPPLPSPLFFGPYEITPDQVFFQSHHSMAIVNLKPLVPCHVLILPYRVVERFSDLRPEEVSDLYRAVHEIGPVLQTYQKKQGLTISMQDGKAAGQTVPHVHVHVLPRLEGDFTPNDKVYEELEAVHLKKHFDLDVERRPRTQAEMAAEALELRKLF-PHRQGRA 244
The following BLAST results are available for this feature:
BLAST of NO10G03200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852795.16.000e-6659.35bis(5'-adenosyl)-triphosphatase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03200NO10G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03200.1NO10G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03200.1.cds1NO10G03200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03200.1 ID=NO10G03200.1|Name=NO10G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
AAGATGTGTGCCAAGTGATTGCATGAGTGGTGGTATGTGCGGTGTATACA
TTGCCTGTCCGCAGGACGCGGCATCTACATCGCCAGGCTCGTCACAACAC
AATCAACAGCGATGATGCGAGACGGAAGGCTGAATGCTTCACTTCCGAAT
TATTACCACACCAATCATTGGACACATAACTTCGACAGGTGTGAGAGTAC
ATTTTCAAGCAAGACAATGCTCTCCGCCCTGTAAGAAGTCCTCTTTCCCG
CCCGTCCCCCTACATGCTTCCTAGCCTCAGCCTGACTGCACGTACCCTCC
GGGGTATTCTCTCCTCCACTTCTGTCTCCTTATCGACTGTTGTCCCTCGA
CGCCATCGATTTCGGGCAACTGCAGCTGCTGCAGCTGCGACAGCCACTGC
TTTGCTGTGCTTCCCAGGCGTCACCTCATTCACCGTTGCCCCTCCTCTAC
GTCCTCGGGGTCACCCTCACTTCCACCCGGGCCCCATCCTCCTCCGCATG
TATTCCTCCTCCTCCAACGGAGTTAGAAGCTCTTCATCTTCTCCGCCCTT
ACCATCTCCCCTCCTCTTCGGTCCATACAAAATTTCGGCAGACCAAGTAT
TTTATCAATCCGCATACAGCACGGCCATCGTCAATCTTAAACCTCTAGTC
CCCTGTCACATCCTCGTCTTGCCTTACCGTGTCGTAGACCGTTTCGCAGA
CCTGCGCCCCGAGGAAGTAAGCGATTTATACCTTGCTGTGCATGAGATTG
GACCGGTGTTGGAAAGGATCAACGGAGGGGAGGGTTTGACGATTTCGATG
CAGGACGGGAAGGCCGCGGGTCAGACGGTGCCTCACGTTCACGTCCACGT
GTTACCCAGAAAAGAAGGGGACTTCACTCCCAACGATCAAGTTTATGAGG
CGTTGGACGGAGTGCAGCTGCACAAGCATTTTGATTTGGATATAGAGAGG
AGGCCGAGGACGGAGGAGGACATGGCAGCGGAAGCGAGGTGGTTGAGGGC
GTTCTTCCCTCCGGAAAGGCAGCCACGGGCATAGAGTAGAAGGATAGAAC
GTGGTGAAGATTGACAATCACATAAAAGGGTGCAAATGAACAAGTGAATC
GTAATTGGCT
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protein sequence of NO10G03200.1

>NO10G03200.1-protein ID=NO10G03200.1-protein|Name=NO10G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLPSLSLTARTLRGILSSTSVSLSTVVPRRHRFRATAAAAAATATALLCF
PGVTSFTVAPPLRPRGHPHFHPGPILLRMYSSSSNGVRSSSSSPPLPSPL
LFGPYKISADQVFYQSAYSTAIVNLKPLVPCHILVLPYRVVDRFADLRPE
EVSDLYLAVHEIGPVLERINGGEGLTISMQDGKAAGQTVPHVHVHVLPRK
EGDFTPNDQVYEALDGVQLHKHFDLDIERRPRTEEDMAAEARWLRAFFPP
ERQPRA*
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mRNA from alignment at chr10:901175..902284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03200.1 ID=NO10G03200.1|Name=NO10G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at chr10:901175..902284+ (Nannochloropsis oceanica)
AAGATGTGTGCCAAGTGATTGCATGAGTGGTGGTATGTGCGGTGTATACA
TTGCCTGTCCGCAGGACGCGGCATCTACATCGCCAGGCTCGTCACAACAC
AATCAACAGCGATGATGCGAGACGGAAGGCTGAATGCTTCACTTCCGAAT
TATTACCACACCAATCATTGGACACATAACTTCGACAGGTGTGAGAGTAC
ATTTTCAAGCAAGACAATGCTCTCCGCCCTGTAAGAAGTCCTCTTTCCCG
CCCGTCCCCCTACATGCTTCCTAGCCTCAGCCTGACTGCACGTACCCTCC
GGGGTATTCTCTCCTCCACTTCTGTCTCCTTATCGACTGTTGTCCCTCGA
CGCCATCGATTTCGGGCAACTGCAGCTGCTGCAGCTGCGACAGCCACTGC
TTTGCTGTGCTTCCCAGGCGTCACCTCATTCACCGTTGCCCCTCCTCTAC
GTCCTCGGGGTCACCCTCACTTCCACCCGGGCCCCATCCTCCTCCGCATG
TATTCCTCCTCCTCCAACGGAGTTAGAAGCTCTTCATCTTCTCCGCCCTT
ACCATCTCCCCTCCTCTTCGGTCCATACAAAATTTCGGCAGACCAAGTAT
TTTATCAATCCGCATACAGCACGGCCATCGTCAATCTTAAACCTCTAGTC
CCCTGTCACATCCTCGTCTTGCCTTACCGTGTCGTAGACCGTTTCGCAGA
CCTGCGCCCCGAGGAAGTAAGCGATTTATACCTTGCTGTGCATGAGATTG
GACCGGTGTTGGAAAGGATCAACGGAGGGGAGGGTTTGACGATTTCGATG
CAGGACGGGAAGGCCGCGGGTCAGACGGTGCCTCACGTTCACGTCCACGT
GTTACCCAGAAAAGAAGGGGACTTCACTCCCAACGATCAAGTTTATGAGG
CGTTGGACGGAGTGCAGCTGCACAAGCATTTTGATTTGGATATAGAGAGG
AGGCCGAGGACGGAGGAGGACATGGCAGCGGAAGCGAGGTGGTTGAGGGC
GTTCTTCCCTCCGGAAAGGCAGCCACGGGCATAGAGTAGAAGGATAGAAC
GTGGTGAAGATTGACAATCACATAAAAGGGTGCAAATGAACAAGTGAATC
GTAATTGGCT
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Coding sequence (CDS) from alignment at chr10:901175..902284+

>NO10G03200.1 ID=NO10G03200.1|Name=NO10G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr10:901175..902284+ (Nannochloropsis oceanica)
ATGCTTCCTAGCCTCAGCCTGACTGCACGTACCCTCCGGGGTATTCTCTC
CTCCACTTCTGTCTCCTTATCGACTGTTGTCCCTCGACGCCATCGATTTC
GGGCAACTGCAGCTGCTGCAGCTGCGACAGCCACTGCTTTGCTGTGCTTC
CCAGGCGTCACCTCATTCACCGTTGCCCCTCCTCTACGTCCTCGGGGTCA
CCCTCACTTCCACCCGGGCCCCATCCTCCTCCGCATGTATTCCTCCTCCT
CCAACGGAGTTAGAAGCTCTTCATCTTCTCCGCCCTTACCATCTCCCCTC
CTCTTCGGTCCATACAAAATTTCGGCAGACCAAGTATTTTATCAATCCGC
ATACAGCACGGCCATCGTCAATCTTAAACCTCTAGTCCCCTGTCACATCC
TCGTCTTGCCTTACCGTGTCGTAGACCGTTTCGCAGACCTGCGCCCCGAG
GAAGTAAGCGATTTATACCTTGCTGTGCATGAGATTGGACCGGTGTTGGA
AAGGATCAACGGAGGGGAGGGTTTGACGATTTCGATGCAGGACGGGAAGG
CCGCGGGTCAGACGGTGCCTCACGTTCACGTCCACGTGTTACCCAGAAAA
GAAGGGGACTTCACTCCCAACGATCAAGTTTATGAGGCGTTGGACGGAGT
GCAGCTGCACAAGCATTTTGATTTGGATATAGAGAGGAGGCCGAGGACGG
AGGAGGACATGGCAGCGGAAGCGAGGTGGTTGAGGGCGTTCTTCCCTCCG
GAAAGGCAGCCACGGGCATAG
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Synonyms
Publications