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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:880231..883160 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03140.1 vs.
Match: EWM25516.1 (hypothetical protein Naga_100032g5 [Nannochloropsis gaditana]) HSP 1 Score: 72.8 bits (177), Expect = 5.800e-9 Identity = 83/263 (31.56%), Postives = 120/263 (45.63%), Query Frame = 0
Query: 588 DREEIEAATASTFIAAAPPSSGPPPASLLLSSLSSSFYPHFVPTSKPSGALQTKYSSSSSSSSAAIATTAPIATLAASASSSPSLPPPPSPSSPSSSKKAPI----------HS-----PSSSCSSSSPPPSHSPSSSSSLPHSSTATSTGAFPRVSHATGVAKLSKRLKAEFNLWLSTHRPALTPDSREHYLKTVGRTIKTYAPTHLNASKKQFARLKCKKDVHNFFLVDAERITRARAMVQELPSYSAATSWNHFMHFVGL 836
D+ ++A+++ + A+ P S S+++SS + S PT +T + A + P A +A +P+ P S SK + H+ P+ S PP + L TG RV A + KLS +K EF WL+ HR +LT +SREHY K VG T K++A T+ A K +K K+DV + R+ +AR MVQ L SYSAA+SW HFMHF+GL
Sbjct: 1497 DKLFLKASSSLRMVRASSPCSETSSTSIVISSTADSQGVMSTPTLCAGREEKTSF--------ARVPNDVPWRLSAFNAEETPTQHPSSPALLDSRSKDQALVLKGTATFDLHADESGDPAEEDSPMKPPTPDVKAEKVGLKGGKIGLETGEDKRVPVAA-LVKLSNGVKEEFKAWLAEHRSSLTTESREHYAKVVGNTFKSHASTYWGAKK----TIKAKEDVVVLLREEPLRLQQAREMVQNLSSYSAASSWGHFMHFLGL 1746
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03140.1 ID=NO10G03140.1|Name=NO10G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2654bp ATGCTGCGCGACCCTGGAAGGGTGGACGATTCCAGAGGGGAATATGCCCA TGCGGAGGAGGTGGTACAGCGGCAGCAGCAACATCATCAGCAGCTGCAAG CTTACCGTCAAAGCATGCATTACCTTACCGCACAAGCCTCGGCGCACCTG CAGCACTACCCGTTGCGGGGCGTAGGCGGAGGTTACCCCAATGTGAGAGG AGGCTTCGGCGCCACCATGGACCAGCAACTAATGGCGGCCACATCGCAGG ATGTTGGTGTCCAGCAGCAGCAGTACGATTCATACCCGCTGTTGCAACGC TACGCTTTCCCCTACCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCA GCTAACATATGGCAACCAAGGCCAACAGGCGCAGCAGCCGGTAGGTTTTA GCCACTACAGCTACCTGCAGCCACAGACAAATTCAGCTGTCCCGTCCTTC ATGGCTTCCTTCTCTCCTGTCCTCCCCGGAAGCGTTGGACCAGCGGAGAT GTTGCGGCTCGCCCCTTACCAATTCCACCAGCAAACTCAAGCACAGCAGG TCGAGCACCACCAACAGCAGCTATTTGCTTTGGCGATGATGATTACGCAA CAAAAGGAGCAGCAGGCTCAGCAACGGCTGTCCGCCCCCATAATGAGAAG GGGGGGAGGAGGAGTTGGATTTGGATTTGGATTTACCCGCTCCCCGCAGG GAGGCACGGCGGGCCTTGGCAGTGGAAATGGAGAAGGAGGTATGAAAGGT AAAGGATCAGAGGAAGGGCTTTCGCCATACAAACAGCCACCGCATTATCG TCAACCCCAGCAGCTGCAACAGCGGCATCAGTATGAAAATCAAGTAGAGC AGCAGCAACTGCAACAACCGCAGCAAAGTCAGCAGCAGGACGATGCCAGT GATGAAGCTCAAATGGTTGCATTCGAGGAGGAAAGGGACGATTTACAGCA ACGCCTACAGCAGCAGCAGCAGCAGCAACAACAACCACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAAGAAGATCAGCAACAGCAGCAGCCATGGGAAGCCCAGCA AAAGCGTTCACCTTTTCCTTTCCCCTTTATGGCATCACCAGGTGATTCAA TACCACACTCCACCGTATCTTCCTTCTCCCCAACGGCAGTTTCTCAAGCA ACAGCAGTCGCACCACCAGCAAGTGCGGAAAAGACTTCACCCTGGCCCTT TCCATCGTCTGTTGCTACCCTTCCTCCGCCTCTGGAGCCATTCCCCAAAA ATCACAACAACTACAAGCCCACCTCCTTCCGCCCTTCTCCCTCGTCCTCT TCCTCTCCTACTCCCTCTTTTTGTGTTTTTCCTTCTTCTTCTTCTCCTCG TCGTCGTCCTCCTCCACTACCGCCTTCCCATTCTTCTTCTTTATTTCCTC CAGCCCCAGGTCCCGCAGCATTATTACCATCAGCACTAGCAGCAGCAGAA GTCGAAGTAATGGGAAATCACATTAATTGTTCCACCGCCATCAGCAACGG TCCAGAGCAGCATCAGCACCAGCAGCACCAGCAGCACCTGCAGCACCAGC ACCGCGAGCACCAGCAGCAGAACGTCCAGCAGCATCAGCACCAGCACCAC CAATACCGGACGCGGAAAGCTCAATTCGACGACGATGAGCAATCTCTTCC TCTTGCGCCCCCACCTTTCGTCCTTGCGACCTCCTGTGCACCTTTCCATC TTGCGCCTCCCGACCGGGAAGAAATAGAAGCAGCAACAGCGTCCACTTTT ATTGCTGCCGCACCACCCTCTTCTGGACCCCCTCCCGCCAGCCTGCTACT GTCCTCCTTGTCTTCTTCTTTCTACCCCCACTTTGTTCCAACCTCTAAAC CATCGGGCGCGCTGCAGACTAAATATAGCAGCAGCAGCAGCAGCAGCAGT GCTGCAATCGCAACCACAGCCCCCATAGCAACCCTCGCAGCCTCTGCCTC CTCGTCCCCCTCTTTACCTCCTCCCCCCTCTCCCTCATCTCCTTCCTCAT CCAAGAAAGCCCCAATTCACTCCCCTTCTTCTTCGTGCTCTTCGTCTTCT CCGCCTCCTTCTCATTCGCCTTCTTCCTCTTCGTCTTTGCCGCATTCTTC TACCGCCACAAGTACCGGTGCGTTTCCCCGGGTTTCTCATGCAACAGGCG TTGCCAAACTGTCCAAGCGCCTCAAGGCAGAATTCAATCTCTGGCTGAGC ACCCACCGTCCCGCCCTCACTCCCGACTCCCGCGAGCATTACCTCAAGAC CGTCGGGAGAACGATCAAGACATACGCTCCTACCCACCTGAATGCCTCGA AAAAACAATTTGCCCGCTTGAAATGTAAGAAAGATGTACATAATTTTTTC TTGGTGGATGCTGAGCGGATAACTCGCGCCAGAGCCATGGTCCAGGAGCT GCCTTCTTACTCGGCAGCCACTTCTTGGAATCATTTCATGCATTTTGTGG GGTTGGGGTGTGAGGAGGGAGGGAAGGAGGGAGGGAGGGAAGTTGGAGAT AGATAGAGATATATAGATATGTAGAGAAGAGAGAATAGTTGAATCACGGA GACCGAGAAACCGAATTAAGGGACAGAAAGGAAAATCACATTATGATAAG TGGT back to topprotein sequence of NO10G03140.1 >NO10G03140.1-protein ID=NO10G03140.1-protein|Name=NO10G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=852bp MLRDPGRVDDSRGEYAHAEEVVQRQQQHHQQLQAYRQSMHYLTAQASAHL QHYPLRGVGGGYPNVRGGFGATMDQQLMAATSQDVGVQQQQYDSYPLLQR YAFPYQQQQQQQQQQQQLTYGNQGQQAQQPVGFSHYSYLQPQTNSAVPSF MASFSPVLPGSVGPAEMLRLAPYQFHQQTQAQQVEHHQQQLFALAMMITQ QKEQQAQQRLSAPIMRRGGGGVGFGFGFTRSPQGGTAGLGSGNGEGGMKG KGSEEGLSPYKQPPHYRQPQQLQQRHQYENQVEQQQLQQPQQSQQQDDAS DEAQMVAFEEERDDLQQRLQQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQ QQQQEDQQQQQPWEAQQKRSPFPFPFMASPGDSIPHSTVSSFSPTAVSQA TAVAPPASAEKTSPWPFPSSVATLPPPLEPFPKNHNNYKPTSFRPSPSSS SSPTPSFCVFPSSSSPRRRPPPLPPSHSSSLFPPAPGPAALLPSALAAAE VEVMGNHINCSTAISNGPEQHQHQQHQQHLQHQHREHQQQNVQQHQHQHH QYRTRKAQFDDDEQSLPLAPPPFVLATSCAPFHLAPPDREEIEAATASTF IAAAPPSSGPPPASLLLSSLSSSFYPHFVPTSKPSGALQTKYSSSSSSSS AAIATTAPIATLAASASSSPSLPPPPSPSSPSSSKKAPIHSPSSSCSSSS PPPSHSPSSSSSLPHSSTATSTGAFPRVSHATGVAKLSKRLKAEFNLWLS THRPALTPDSREHYLKTVGRTIKTYAPTHLNASKKQFARLKCKKDVHNFF LVDAERITRARAMVQELPSYSAATSWNHFMHFVGLGCEEGGKEGGREVGD R* back to topmRNA from alignment at chr10:880231..883160- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03140.1 ID=NO10G03140.1|Name=NO10G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2930bp|location=Sequence derived from alignment at chr10:880231..883160- (Nannochloropsis oceanica) ATGCTGCGCGACCCTGGAAGGGTGGACGATTCCAGAGGGGAATATGCCCA
TGCGGAGGAGGTGGTACAGCGGCAGCAGCAACATCATCAGCAGCTGCAAG
CTTACCGTCAAAGCATGCATTACCTTACCGCACAAGCCTCGGCGCACCTG
CAGCACTACCCGTTGCGGGGCGTAGGCGGAGGTTACCCCAATGTGAGAGG
AGGCTTCGGCGCCACCATGGACCAGCAACTAATGGCGGCCACATCGCAGG
ATGTTGGTGTCCAGCAGCAGCAGTACGATTCATACCCGCTGTTGCAACGC
TACGCTTTCCCCTACCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCA
GCTAACATATGGCAACCAAGGCCAACAGGCGCAGCAGCCGGTAGGTTTTA
GCCACTACAGCTACCTGCAGCCACAGACAAATTCAGCTGTCCCGTCCTTC
ATGGCTTCCTTCTCTCCTGTCCTCCCCGGAAGCGTTGGACCAGCGGAGAT
GTTGCGGCTCGCCCCTTACCAATTCCACCAGCAAACTCAAGCACAGCAGG
TCGAGCACCACCAACAGCAGCTATTTGCTTTGGCGATGATGATTACGCAA
CAAAAGGAGCAGCAGGCTCAGCAACGGCTGTCCGCCCCCATAATGAGAAG
GGGGGGAGGAGGAGTTGGATTTGGATTTGGATTTACCCGCTCCCCGCAGG
GAGGCACGGCGGGCCTTGGCAGTGGAAATGGAGAAGGAGGTATGAAAGGT
AAAGGATCAGAGGAAGGGCTTTCGCCATACAAACAGCCACCGCATTATCG
TCAACCCCAGCAGCTGCAACAGCGGCATCAGTATGAAAATCAAGTAGAGC
AGCAGCAACTGCAACAACCGCAGCAAAGTCAGCAGCAGGACGATGCCAGT
GATGAAGCTCAAATGGGTAAGGTGGCACCAACATCACCTGGGAAGATCTC
CCTCCATGTCTCCTCCCCTCTTCCTCCCCCCCCTAAAAAAAGACCGAGAG
GTCGACCTCGAAAACCGACTCCGCTATTCCCCATCCCGAAACGGCCCAGG
GGACGACCTAGAAAGTCATCGATCCTCGGCTTCCCCCCTCACTCCCTACC
TGCCCCCAAAAGACCGAGAGGACGGCCACGAAAATCAACTAATTTAGCTG
CTACAGTTGGTTTTTCCCCAATCGGACCACTGCCCAATCCAGTTGCATTC
GAGGAGGAAAGGGACGATTTACAGCAACGCCTACAGCAGCAGCAGCAGCA
GCAACAACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAAGAAGATCAGCAA
CAGCAGCAGCCATGGGAAGCCCAGCAAAAGCGTTCACCTTTTCCTTTCCC
CTTTATGGCATCACCAGGTGATTCAATACCACACTCCACCGTATCTTCCT
TCTCCCCAACGGCAGTTTCTCAAGCAACAGCAGTCGCACCACCAGCAAGT
GCGGAAAAGACTTCACCCTGGCCCTTTCCATCGTCTGTTGCTACCCTTCC
TCCGCCTCTGGAGCCATTCCCCAAAAATCACAACAACTACAAGCCCACCT
CCTTCCGCCCTTCTCCCTCGTCCTCTTCCTCTCCTACTCCCTCTTTTTGT
GTTTTTCCTTCTTCTTCTTCTCCTCGTCGTCGTCCTCCTCCACTACCGCC
TTCCCATTCTTCTTCTTTATTTCCTCCAGCCCCAGGTCCCGCAGCATTAT
TACCATCAGCACTAGCAGCAGCAGAAGTCGAAGTAATGGGAAATCACATT
AATTGTTCCACCGCCATCAGCAACGGTCCAGAGCAGCATCAGCACCAGCA
GCACCAGCAGCACCTGCAGCACCAGCACCGCGAGCACCAGCAGCAGAACG
TCCAGCAGCATCAGCACCAGCACCACCAATACCGGACGCGGAAAGCTCAA
TTCGACGACGATGAGCAATCTCTTCCTCTTGCGCCCCCACCTTTCGTCCT
TGCGACCTCCTGTGCACCTTTCCATCTTGCGCCTCCCGACCGGGAAGAAA
TAGAAGCAGCAACAGCGTCCACTTTTATTGCTGCCGCACCACCCTCTTCT
GGACCCCCTCCCGCCAGCCTGCTACTGTCCTCCTTGTCTTCTTCTTTCTA
CCCCCACTTTGTTCCAACCTCTAAACCATCGGGCGCGCTGCAGACTAAAT
ATAGCAGCAGCAGCAGCAGCAGCAGTGCTGCAATCGCAACCACAGCCCCC
ATAGCAACCCTCGCAGCCTCTGCCTCCTCGTCCCCCTCTTTACCTCCTCC
CCCCTCTCCCTCATCTCCTTCCTCATCCAAGAAAGCCCCAATTCACTCCC
CTTCTTCTTCGTGCTCTTCGTCTTCTCCGCCTCCTTCTCATTCGCCTTCT
TCCTCTTCGTCTTTGCCGCATTCTTCTACCGCCACAAGTACCGGTGCGTT
TCCCCGGGTTTCTCATGCAACAGGCGTTGCCAAACTGTCCAAGCGCCTCA
AGGCAGAATTCAATCTCTGGCTGAGCACCCACCGTCCCGCCCTCACTCCC
GACTCCCGCGAGCATTACCTCAAGACCGTCGGGAGAACGATCAAGACATA
CGCTCCTACCCACCTGAATGCCTCGAAAAAACAATTTGCCCGCTTGAAAT
GTAAGAAAGATGTACATAATTTTTTCTTGGTGGATGCTGAGCGGATAACT
CGCGCCAGAGCCATGGTCCAGGAGCTGCCTTCTTACTCGGCAGCCACTTC
TTGGAATCATTTCATGCATTTTGTGGGGTTGGGGTGTGAGGAGGGAGGGA
AGGAGGGAGGGAGGGAAGTTGGAGATAGATAGAGATATATAGATATGTAG
AGAAGAGAGAATAGTTGAATCACGGAGACCGAGAAACCGAATTAAGGGAC
AGAAAGGAAAATCACATTATGATAAGTGGT back to topCoding sequence (CDS) from alignment at chr10:880231..883160- >NO10G03140.1 ID=NO10G03140.1|Name=NO10G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at chr10:880231..883160- (Nannochloropsis oceanica) ATGCTGCGCGACCCTGGAAGGGTGGACGATTCCAGAGGGGAATATGCCCA TGCGGAGGAGGTGGTACAGCGGCAGCAGCAACATCATCAGCAGCTGCAAG CTTACCGTCAAAGCATGCATTACCTTACCGCACAAGCCTCGGCGCACCTG CAGCACTACCCGTTGCGGGGCGTAGGCGGAGGTTACCCCAATGTGAGAGG AGGCTTCGGCGCCACCATGGACCAGCAACTAATGGCGGCCACATCGCAGG ATGTTGGTGTCCAGCAGCAGCAGTACGATTCATACCCGCTGTTGCAACGC TACGCTTTCCCCTACCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCA GCTAACATATGGCAACCAAGGCCAACAGGCGCAGCAGCCGGTAGGTTTTA GCCACTACAGCTACCTGCAGCCACAGACAAATTCAGCTGTCCCGTCCTTC ATGGCTTCCTTCTCTCCTGTCCTCCCCGGAAGCGTTGGACCAGCGGAGAT GTTGCGGCTCGCCCCTTACCAATTCCACCAGCAAACTCAAGCACAGCAGG TCGAGCACCACCAACAGCAGCTATTTGCTTTGGCGATGATGATTACGCAA CAAAAGGAGCAGCAGGCTCAGCAACGGCTGTCCGCCCCCATAATGAGAAG GGGGGGAGGAGGAGTTGGATTTGGATTTGGATTTACCCGCTCCCCGCAGG GAGGCACGGCGGGCCTTGGCAGTGGAAATGGAGAAGGAGGTATGAAAGGT AAAGGATCAGAGGAAGGGCTTTCGCCATACAAACAGCCACCGCATTATCG TCAACCCCAGCAGCTGCAACAGCGGCATCAGTATGAAAATCAAGTAGAGC AGCAGCAACTGCAACAACCGCAGCAAAGTCAGCAGCAGGACGATGCCAGT GATGAAGCTCAAATGGTTGCATTCGAGGAGGAAAGGGACGATTTACAGCA ACGCCTACAGCAGCAGCAGCAGCAGCAACAACAACCACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAAGAAGATCAGCAACAGCAGCAGCCATGGGAAGCCCAGCA AAAGCGTTCACCTTTTCCTTTCCCCTTTATGGCATCACCAGGTGATTCAA TACCACACTCCACCGTATCTTCCTTCTCCCCAACGGCAGTTTCTCAAGCA ACAGCAGTCGCACCACCAGCAAGTGCGGAAAAGACTTCACCCTGGCCCTT TCCATCGTCTGTTGCTACCCTTCCTCCGCCTCTGGAGCCATTCCCCAAAA ATCACAACAACTACAAGCCCACCTCCTTCCGCCCTTCTCCCTCGTCCTCT TCCTCTCCTACTCCCTCTTTTTGTGTTTTTCCTTCTTCTTCTTCTCCTCG TCGTCGTCCTCCTCCACTACCGCCTTCCCATTCTTCTTCTTTATTTCCTC CAGCCCCAGGTCCCGCAGCATTATTACCATCAGCACTAGCAGCAGCAGAA GTCGAAGTAATGGGAAATCACATTAATTGTTCCACCGCCATCAGCAACGG TCCAGAGCAGCATCAGCACCAGCAGCACCAGCAGCACCTGCAGCACCAGC ACCGCGAGCACCAGCAGCAGAACGTCCAGCAGCATCAGCACCAGCACCAC CAATACCGGACGCGGAAAGCTCAATTCGACGACGATGAGCAATCTCTTCC TCTTGCGCCCCCACCTTTCGTCCTTGCGACCTCCTGTGCACCTTTCCATC TTGCGCCTCCCGACCGGGAAGAAATAGAAGCAGCAACAGCGTCCACTTTT ATTGCTGCCGCACCACCCTCTTCTGGACCCCCTCCCGCCAGCCTGCTACT GTCCTCCTTGTCTTCTTCTTTCTACCCCCACTTTGTTCCAACCTCTAAAC CATCGGGCGCGCTGCAGACTAAATATAGCAGCAGCAGCAGCAGCAGCAGT GCTGCAATCGCAACCACAGCCCCCATAGCAACCCTCGCAGCCTCTGCCTC CTCGTCCCCCTCTTTACCTCCTCCCCCCTCTCCCTCATCTCCTTCCTCAT CCAAGAAAGCCCCAATTCACTCCCCTTCTTCTTCGTGCTCTTCGTCTTCT CCGCCTCCTTCTCATTCGCCTTCTTCCTCTTCGTCTTTGCCGCATTCTTC TACCGCCACAAGTACCGGTGCGTTTCCCCGGGTTTCTCATGCAACAGGCG TTGCCAAACTGTCCAAGCGCCTCAAGGCAGAATTCAATCTCTGGCTGAGC ACCCACCGTCCCGCCCTCACTCCCGACTCCCGCGAGCATTACCTCAAGAC CGTCGGGAGAACGATCAAGACATACGCTCCTACCCACCTGAATGCCTCGA AAAAACAATTTGCCCGCTTGAAATGTAAGAAAGATGTACATAATTTTTTC TTGGTGGATGCTGAGCGGATAACTCGCGCCAGAGCCATGGTCCAGGAGCT GCCTTCTTACTCGGCAGCCACTTCTTGGAATCATTTCATGCATTTTGTGG GGTTGGGGTGTGAGGAGGGAGGGAAGGAGGGAGGGAGGGAAGTTGGAGAT AGATAG back to top
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