NO10G03120.1, NO10G03120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03120.1
Unique NameNO10G03120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1604
Alignment locationchr10:873238..876076 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:873238..876076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03120.1 vs.
Match: EWM25506.1 (ribosomal protein s3a [Nannochloropsis gaditana])

HSP 1 Score: 490.7 bits (1262), Expect = 2.800e-135
Identity = 251/266 (94.36%), Postives = 260/266 (97.74%), Query Frame = 0 
Query:    1 MAVGKNQKRVSKGRKGGKKKITDPFLKKEWYDIKAPGYFKTRAVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTEILTNFHGMDLTREKINSLIKKWQTLIEAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAYAQAAQVRAIRKKIVDIIKEKVEKNDLKELVKLFIPEQIGREIEKAAKGIFPLSVVYVRKVKVLKKPKFDLVKLMEIHEGQTPVDDTGAGIDRPEEPALVPEVAGSGGRL 267
            MAVGKNQK+VSKGRKGGKKKI DPFLKKEWYDIKAPGYFKTR VGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGT+ILTNFHGMDLTREK+NSLIKKWQTLI+AHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAA+AQAAQVRAIRKKIVDIIKEKV  NDLKELVKLFIPEQIGREIE+A KGIFPLSVVY+RKVKVLKKPKFDLVKLMEIHEG TPVD+TGAG+DRPEEPALVPEVAGSGGRL
Sbjct:    1 MAVGKNQKKVSKGRKGGKKKIVDPFLKKEWYDIKAPGYFKTRKVGKTLITRTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTDILTNFHGMDLTREKLNSLIKKWQTLIDAHVEAKTTDGYTLRLFAVAFTKRVPGQVSKAAHAQAAQVRAIRKKIVDIIKEKVVNNDLKELVKLFIPEQIGREIERATKGIFPLSVVYLRKVKVLKKPKFDLVKLMEIHEGTTPVDETGAGVDRPEEPALVPEVAGSGGRL 266
The following BLAST results are available for this feature:
BLAST of NO10G03120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25506.12.800e-13594.36ribosomal protein s3a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03120NO10G03120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03120.1NO10G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03120.1.cds1NO10G03120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03120.1.cds2NO10G03120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03120.1.cds3NO10G03120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03120.1.cds4NO10G03120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03120.1.cds5NO10G03120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03120.1 ID=NO10G03120.1|Name=NO10G03120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp
CACCACCCACCGCTCCTGCGTAGCCTTCCTTCTTCGTCGTCGTGGGACGT
GCCTCATACTGTCGGGGCTACACGATTGCGGTAGCATGGTTTGGAGGGCA
CACAGGGTTGCATGTGGTGGTTGCTTGTGGTGGGAGGCATGTTTCTGACT
GAATGGATGGTGTGCAAGGCAGGACGTTGCCTCCTCTCCCCTTGGCGACG
AATGGAGGGAGGTGGAAAGCCCTCTTATTGACTGCCACTTACACCTTTGA
CCCTCACAATCCATCAGTGAATTGTGCCTGGATTTAGGCTGGGCGTGTAG
TTGTTCAGAAGATCCTCCCACCTTTGGGAAGGGTGGCTTGAGTGTCATGC
ATCAGTCAGCCTCCCCCTCCACCGCACGCCTCGACGAAGAGGAGATGATG
AACACTCCACCACGCATTGATTTATCGACTCACATCTGTCCATCCCGCCC
ACCAACGACACCACACAGGCATCACTCTTCCCAGGCAACGTCCGTAGGAG
AACAGAAGCCATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCC
GAAAAGGAGGCAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGG
TACGACATCAAGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGAC
GCTCATCACGCGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGG
GCCGTGTATTCGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAG
CAGGGCTATCGCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGA
GATTCTGACGAACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACT
CGCTCATCAAGAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAG
ACGACAGACGGCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCG
TGTCCCCGGCCAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGC
GCGCGATCAGGAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAG
AATGACCTGAAGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCG
CGAGATCGAGAAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATG
TTCGTAAGGTGAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTC
ATGGAGATTCATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCAT
TGACCGACCAGAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAG
GGCGGCTGTAAGGCTGTTGCTGGCGTAGGGGTGGAGGGAGGGGAGAGGGG
GGTATTACTTTTGTAATTCTCCTTTTCTTCCGGCGGGAGTCCCTTCTTTC
GGCCCGGGTGGTGCGGGAGGGACGGGAGTGAAGGCTGTGACGTTGGCAGC
CCGGGAGTCAGTTAGGAACGTATTTCTTGTCTTCTTTTTGTTTCGTGTAG
GCAGGTGGCAGAGCGCGAGGCAGAAAAGACGACGAAGAAAGCAAGCGTGA
GAACGCGAATATACCAACAAGCAAAAAAGAAGGCAAAAAACACAAGCAAA
ATCA
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protein sequence of NO10G03120.1

>NO10G03120.1-protein ID=NO10G03120.1-protein|Name=NO10G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAVGKNQKRVSKGRKGGKKKITDPFLKKEWYDIKAPGYFKTRAVGKTLIT
RTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTEILT
NFHGMDLTREKINSLIKKWQTLIEAHVEAKTTDGYTLRLFAVAFTKRVPG
QVSKAAYAQAAQVRAIRKKIVDIIKEKVEKNDLKELVKLFIPEQIGREIE
KAAKGIFPLSVVYVRKVKVLKKPKFDLVKLMEIHEGQTPVDDTGAGIDRP
EEPALVPEVAGSGGRL*
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mRNA from alignment at chr10:873238..876076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03120.1 ID=NO10G03120.1|Name=NO10G03120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2839bp|location=Sequence derived from alignment at chr10:873238..876076- (Nannochloropsis oceanica)
CACCACCCACCGCTCCTGCGTAGCCTTCCTTCTTCGTCGTCGTGGGACGT
GCCTCATACTGTCGGGGCTACACGATTGCGGTAGCATGGTTTGGAGGGCA
CACAGGGTTGCATGTGGTGGTTGCTTGTGGTGGGAGGCATGTTTCTGACT
GAATGGATGGTGTGCAAGGCAGGACGTTGCCTCCTCTCCCCTTGGCGACG
AATGGAGGGAGGTGGAAAGCCCTCTTATTGACTGCCACTTACACCTTTGA
CCCTCACAATCCATCAGTGAATTGTGCCTGGATTTAGGCTGGGCGTGTAG
TTGTTCAGAAGATCCTCCCACCTTTGGGAAGGGTGGCTTGAGTGTCATGC
ATCAGTCAGCCTCCCCCTCCACCGCACGCCTCGACGAAGAGGAGATGATG
AACACTCCACCACGCATTGATTTATCGACTCACATCTGTCCATCCCGCCC
ACCAACGACACCACACAGGCATCACTCTTCCCAGGCAACGTCCGTAGGAG
AACAGAAGCCATGGCTGTTGGTAAGTGGTCAAACGATGCGAGGGGTAGGG
TTGGATAGGGGACGATGGAAAGGAAGAAATAGAGGATGGCCTTCGGGTCG
TGGGACATGTTGCTGCGATGAGTGGATTGTACACCCTTGGTATCTATCTG
GTAGTCTTGGCAAGGAAGGTGGCAGAGCGTGGAAGAGGATGCGAGCAGTG
TACATATGCGTGTAGGCCTTCAGAAGTCACCACTTTGTTCTCATCACTCC
CTATCCCCCTCCTCGTCCTCCCCCTCTTATCTACAAAAGGCAAGAACCAA
AAGCGGGTCTCCAAGGGCCGAAAAGGAGGCAAGAAGAAGATGTAAGCAGT
GCTGCTCCCGCTCTTCTCATTCCTTTTCCCAATGGATGTTACGCAAACCA
CTACTCTCCGTCCCTTCCCTCACACATGATCCCCCTCCCCCTCCTCTTCC
CCCTTTCCTCTCTAGTACCGACCCTTTTCTGAAGAAGGAATGGTACGACA
TCAAGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATC
ACGCGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGT
ATTCGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCT
ATCGCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTG
ACGAACTTTCACGGGATGGACTTGACAAGGTATGTCAAAGGTGAAAGGGG
CGAGGGAGGAGTAGGATGCCACACCGAGGTTTTGGGAGCGAGAGAAGGCT
TTAGTTTCAGACTATCTTGTTTTCTGCGCGGGTTACTTCAGGCGTCGTTT
TGAGAAGTATGCGTATGTAGGATAGCTGCCTGATCTGTTCTTAAAATGCA
CTCTCTCACATGTTTGTCCTTCCCCCCCTCCATCCCTCATTCCCTTCCTC
CCACTCCCTCTTTCTCTTCTCCATTCACAGGGAGAAGATCAACTCGCTCA
TCAAGAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACA
GACGGCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCC
CGGCCAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGA
TCAGGAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGAC
CTGAAGGAACTGGTGAAGCTTTTGTGAGTATTTCTCATCTAAAATGATCG
CTTTTTTATATCACAAGGGATGGAGGGAGGGAGAGAGGAGGGGTGTGTGG
GGTTTTTCAGGACCCACCATTTCCGAGCCAAGGGAAGGTGTGGGTGATGG
ATGCTTCCCTTTTGTGTATATATGAGCTCATCTGTGTATTGCTCTAGTCA
TGTCCATTTCTTTTTTTTATCCATTTACTTGTTATTATTTATTATTAATA
TTATTATTAATATTATAATTATCCAGATTTTTTTTTTTTAATGACATGCA
GTTCACTCTGCCACGGAGCCCCAGCGAGTCTATCGCCAGGCCACGGGAAA
ATCGAATCAAAACTCCCTGCTCTGCCATGTGACTGCACAGAGAGAACGTT
AATTATGTCCCTCATAGGAACCTCTATGTAAGAAGTCCTACGGGGCAGCA
TGCGCAGTGAGGGCTGACGAGGAACAACATCTTCCATTAAGTTTCTATAA
AAACTCCATTTCAATGTCTAAATTTGTATATCTTAGTAATTTTTTCCGAT
GTCAAAAATGCCGGCGCACTCACCCCTCCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCAACACAGCATCCCCGAGCAAATCGGTCGCGAGATCGAGAAGGC
CGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAAGGTGAAGG
TCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGATTCATGAG
GGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGACCAGAGGA
ACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCTGTAAGGCT
GTTGCTGGCGTAGGGGTGGAGGGAGGGGAGAGGGGGGTATTACTTTTGTA
ATTCTCCTTTTCTTCCGGCGGGAGTCCCTTCTTTCGGCCCGGGTGGTGCG
GGAGGGACGGGAGTGAAGGCTGTGACGTTGGCAGCCCGGGAGTCAGTTAG
GAACGTATTTCTTGTCTTCTTTTTGTTTCGTGTAGGCAGGTGGCAGAGCG
CGAGGCAGAAAAGACGACGAAGAAAGCAAGCGTGAGAACGCGAATATACC
AACAAGCAAAAAAGAAGGCAAAAAACACAAGCAAAATCA
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Coding sequence (CDS) from alignment at chr10:873238..876076-

>NO10G03120.1 ID=NO10G03120.1|Name=NO10G03120.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr10:873238..876076- (Nannochloropsis oceanica)
ATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAGGAGG
CAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGACATCA
AGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATCACG
CGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGTATT
CGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCTATC
GCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTGACG
AACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCATCAA
GAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAGACG
GCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCCGGC
CAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGATCAG
GAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACCTGA
AGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGATCGAG
AAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAAGGT
GAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGATTC
ATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGACCA
GAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCTGTA
A
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Synonyms
Publications