NO10G03060.1, NO10G03060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03060.1
Unique NameNO10G03060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr10:849514..850608 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:849514..850608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G03060.1 vs.
Match: XP_002613985.1 (hypothetical protein BRAFLDRAFT_57258 [Branchiostoma floridae]; EEN69994.1 hypothetical protein BRAFLDRAFT_57258 [Branchiostoma floridae])

HSP 1 Score: 259.2 bits (661), Expect = 1.900e-65
Identity = 162/359 (45.13%), Postives = 215/359 (59.89%), Query Frame = 0
Query:    5 MQAVLVSTPGPPENAKLGFTSKPSCREKPGTLLVKVAYAALNRADTLQRQGLYPPPPDASDILGLELSGIIVDIGPNVDPTAFKKGDRAMSLVTGGAYAEYCLVDTATTMRLPASLPLCIAAAIPEAWLTAYQLLHFVGHFQPGQKVLVHAGASSVGLAAIQLILEQGGIPFATA-SAGKLPLLHQMGVLPTHAIDYTKGPNPYFAAEVLAATDGEGVHLVLCCVGASYFTQNLEVLAKEGRLVLYGLMSGAMVPGDADLRVMMKKLLTVTATTLRGRNIDYKEKLVRSFWTGERKGRFVRGAMVGGREGGKESGGGGYRTNVFRTVGWEEVGEAHAMMERNENAGKIVLAV-DPTLDE 362
            MQAV++  PG P+N  +G   KP  R + G +L+KV   A+NRADTLQR+GLYPPP  ASDILGLE +G + D+GP+     +K GDR M+L+ GG  AE+  VD    M +PA +    AAAIPE WLTAYQLLHFVG  Q G+ VL+HAG S VG AA QL    G  P  TA +  KL     +G +   A +Y +G    FA +VL  T+G+GV ++L CVGAS++ QN+  LA EGR VLYGL+ G  + GD  L  +++K + +  TTLR R+  YK  LV+SF +      F  G  +              R  + R V  +++ +AH+ ME N+N GKIVL+V D   DE
Sbjct:    1 MQAVVLQQPGGPDNLSVGRVPKP--RPQAGEVLLKVYATAVNRADTLQRKGLYPPPKGASDILGLEAAGKVDDLGPDCRGR-WKHGDRVMALLPGGGNAEFVTVDEDHLMAIPAGMSYQEAAAIPEVWLTAYQLLHFVGGLQEGETVLIHAGGSGVGTAATQLSRLAGARPIITAGTPEKLQRATDLGAVA--AFNYKEGE---FAQKVLDETNGKGVDVILDCVGASFWQQNVRCLALEGRWVLYGLLGGGSIDGDI-LSQVLRKRINLLGTTLRARSKQYKASLVKSF-SERALPHFTSGGPI------------HLRPIIDRVVPLQDISKAHSCMEDNKNTGKIVLSVRDEDRDE 337          
The following BLAST results are available for this feature:
BLAST of NO10G03060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002613985.11.900e-6545.13hypothetical protein BRAFLDRAFT_57258 [Branchiosto... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03060NO10G03060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03060.1NO10G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03060.1.cds1NO10G03060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03060.1 ID=NO10G03060.1|Name=NO10G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGCCCAACAAGATGCAAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGA
AAACGCCAAGTTGGGTTTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCG
GGACACTTCTGGTCAAGGTTGCATATGCAGCCCTAAATCGCGCAGACACC
TTGCAACGTCAAGGTCTCTACCCTCCACCACCCGATGCCTCAGACATCTT
GGGACTAGAATTGAGTGGCATCATCGTTGACATAGGGCCAAACGTAGACC
CGACAGCGTTTAAAAAAGGCGACCGAGCCATGTCCCTCGTAACTGGCGGG
GCTTACGCGGAATATTGCCTCGTGGATACCGCCACGACCATGCGGCTCCC
CGCTTCCTTGCCCCTCTGCATTGCAGCCGCAATTCCCGAAGCATGGCTCA
CAGCGTATCAACTCCTGCATTTCGTTGGCCATTTTCAACCCGGTCAAAAA
GTCCTCGTCCATGCAGGTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCT
CATTCTCGAGCAAGGTGGTATCCCATTTGCCACCGCCTCTGCTGGCAAAC
TGCCCCTCCTCCACCAGATGGGTGTCTTGCCCACCCATGCCATCGATTAT
ACCAAAGGCCCAAACCCCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGA
TGGGGAAGGGGTGCATCTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCA
CTCAGAATTTAGAAGTGTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGC
CTGATGAGTGGGGCGATGGTGCCTGGGGATGCGGATCTAAGAGTGATGAT
GAAGAAGCTTCTGACTGTCACGGCCACGACATTAAGGGGGAGAAATATTG
ATTATAAAGAAAAATTGGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGG
AGATTTGTGAGGGGGGCGATGGTGGGTGGGAGGGAGGGAGGGAAGGAGTC
TGGGGGAGGAGGGTATAGAACGAACGTGTTCAGAACAGTGGGGTGGGAGG
AGGTGGGGGAGGCCCATGCGATGATGGAAAGGAATGAGAACGCGGGCAAG
ATTGTGTTGGCCGTGGATCCGACGTTGGATGAGGCGGAGGGGTAG
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protein sequence of NO10G03060.1

>NO10G03060.1-protein ID=NO10G03060.1-protein|Name=NO10G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MPNKMQAVLVSTPGPPENAKLGFTSKPSCREKPGTLLVKVAYAALNRADT
LQRQGLYPPPPDASDILGLELSGIIVDIGPNVDPTAFKKGDRAMSLVTGG
AYAEYCLVDTATTMRLPASLPLCIAAAIPEAWLTAYQLLHFVGHFQPGQK
VLVHAGASSVGLAAIQLILEQGGIPFATASAGKLPLLHQMGVLPTHAIDY
TKGPNPYFAAEVLAATDGEGVHLVLCCVGASYFTQNLEVLAKEGRLVLYG
LMSGAMVPGDADLRVMMKKLLTVTATTLRGRNIDYKEKLVRSFWTGERKG
RFVRGAMVGGREGGKESGGGGYRTNVFRTVGWEEVGEAHAMMERNENAGK
IVLAVDPTLDEAEG*
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mRNA from alignment at chr10:849514..850608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03060.1 ID=NO10G03060.1|Name=NO10G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at chr10:849514..850608+ (Nannochloropsis oceanica)
ATGCCCAACAAGATGCAAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGA AAACGCCAAGTTGGGTTTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCG GGACACTTCTGGTCAAGGTTGCATATGCAGCCCTAAATCGCGCAGACACC TTGCAACGTCAAGGTCTCTACCCTCCACCACCCGATGCCTCAGACATCTT GGGACTAGAATTGAGTGGCATCATCGTTGACATAGGGCCAAACGTAGACC CGACAGCGTTTAAAAAAGGCGACCGAGCCATGTCCCTCGTAACTGGCGGG GCTTACGCGGAATATTGCCTCGTGGATACCGCCACGACCATGCGGCTCCC CGCTTCCTTGCCCCTCTGCATTGCAGCCGCAATTCCCGAAGCATGGCTCA CAGCGTATCAACTCCTGCATTTCGTTGGCCATTTTCAACCCGGTCAAAAA GTCCTCGTCCATGCAGGTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCT CATTCTCGAGCAAGGTGGTATCCCATTTGCCACCGCCTCTGCTGGCAAAC TGCCCCTCCTCCACCAGATGGGTGTCTTGCCCACCCATGCCATCGATTAT ACCAAAGGCCCAAACCCCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGA TGGGGAAGGGGTGCATCTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCA CTCAGAATTTAGAAGTGTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGC CTGATGAGTGGGGCGATGGTGCCTGGGGATGCGGATCTAAGAGTGATGAT GAAGAAGCTTCTGACTGTCACGGCCACGACATTAAGGGGGAGAAATATTG ATTATAAAGAAAAATTGGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGG AGATTTGTGAGGGGGGCGATGGTGGGTGGGAGGGAGGGAGGGAAGGAGTC TGGGGGAGGAGGGTATAGAACGAACGTGTTCAGAACAGTGGGGTGGGAGG AGGTGGGGGAGGCCCATGCGATGATGGAAAGGAATGAGAACGCGGGCAAG ATTGTGTTGGCCGTGGATCCGACGTTGGATGAGGCGGAGGGGTAG
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Coding sequence (CDS) from alignment at chr10:849514..850608+

>NO10G03060.1 ID=NO10G03060.1|Name=NO10G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr10:849514..850608+ (Nannochloropsis oceanica)
ATGCCCAACAAGATGCAAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGA
AAACGCCAAGTTGGGTTTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCG
GGACACTTCTGGTCAAGGTTGCATATGCAGCCCTAAATCGCGCAGACACC
TTGCAACGTCAAGGTCTCTACCCTCCACCACCCGATGCCTCAGACATCTT
GGGACTAGAATTGAGTGGCATCATCGTTGACATAGGGCCAAACGTAGACC
CGACAGCGTTTAAAAAAGGCGACCGAGCCATGTCCCTCGTAACTGGCGGG
GCTTACGCGGAATATTGCCTCGTGGATACCGCCACGACCATGCGGCTCCC
CGCTTCCTTGCCCCTCTGCATTGCAGCCGCAATTCCCGAAGCATGGCTCA
CAGCGTATCAACTCCTGCATTTCGTTGGCCATTTTCAACCCGGTCAAAAA
GTCCTCGTCCATGCAGGTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCT
CATTCTCGAGCAAGGTGGTATCCCATTTGCCACCGCCTCTGCTGGCAAAC
TGCCCCTCCTCCACCAGATGGGTGTCTTGCCCACCCATGCCATCGATTAT
ACCAAAGGCCCAAACCCCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGA
TGGGGAAGGGGTGCATCTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCA
CTCAGAATTTAGAAGTGTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGC
CTGATGAGTGGGGCGATGGTGCCTGGGGATGCGGATCTAAGAGTGATGAT
GAAGAAGCTTCTGACTGTCACGGCCACGACATTAAGGGGGAGAAATATTG
ATTATAAAGAAAAATTGGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGG
AGATTTGTGAGGGGGGCGATGGTGGGTGGGAGGGAGGGAGGGAAGGAGTC
TGGGGGAGGAGGGTATAGAACGAACGTGTTCAGAACAGTGGGGTGGGAGG
AGGTGGGGGAGGCCCATGCGATGATGGAAAGGAATGAGAACGCGGGCAAG
ATTGTGTTGGCCGTGGATCCGACGTTGGATGAGGCGGAGGGGTAG
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Synonyms
Publications