NO10G03000.1, NO10G03000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03000.1
Unique NameNO10G03000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1572
Alignment locationchr10:833842..835413 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:833842..835413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03000.1 vs.
Match: EWM25533.1 (hypothetical protein Naga_100032g19 [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 4.000e-92
Identity = 175/252 (69.44%), Postives = 207/252 (82.14%), Query Frame = 0 
Query:   86 LVSTLRSTMAAAAVSAAGSLLAWIQATFEPLTTIEFKEDVCMAVFIYVIGYAALGGFSPLMHVKRKAWILSVLCAVGMSLGSIPYVWKLATKHGFVTGEMVYADDRLSLFIMAFFMTFLVLDLVIGFGHYAGEIGLLTGWFHHCLYMGMCVWAVVNGISISAVATMIMEIPTLVMALGRVYKGLRSDFLFGFTFLVTRILYLGFYIYRLMCDVSPRVVVWPVCVPAMILHVFWFQGFIQQQRRLRKLYSEGG 338
            +VS L   MA AA   AG LLA ++ T  PL T EFKEDVC+++ IY++GYAALGGFSPLM  KRKAWI+SVLC++GMSLGS+PYV++L   HGF TG+MVYADDRLS+F+M+FFMTFLVLD+V+G   Y  EI  LTGWFHH LYM  C+WA+++ ISISAVATMIME+PTLVMALGR+ K +R+DFLFG TF  TRI+YLG YIY+LMCDVSPRVVVWPVC+PAM LH+FWFQGFIQQQ RLR   SE G
Sbjct:   14 VVSALTFVMAGAA---AGRLLASLRETCLPLMTTEFKEDVCLSILIYLVGYAALGGFSPLMPTKRKAWIMSVLCSLGMSLGSLPYVYRLVYIHGFDTGKMVYADDRLSVFVMSFFMTFLVLDIVVGLRIYPSEISFLTGWFHHSLYMCACLWAMIHQISISAVATMIMEVPTLVMALGRLDKSMRNDFLFGSTFFATRIVYLGIYIYKLMCDVSPRVVVWPVCLPAMALHLFWFQGFIQQQMRLRTRSSEAG 262
The following BLAST results are available for this feature:
BLAST of NO10G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25533.14.000e-9269.44hypothetical protein Naga_100032g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03000NO10G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03000.1NO10G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03000.1.cds1NO10G03000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03000.1 ID=NO10G03000.1|Name=NO10G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
GGAAGCTGACGGTTGCTGCGCCAAGCAACCGACGGTCGAATTTTGAGGCC
ATGCGGCGCAGCATCGTGTTAATGTATGTGTGTGTTGTGGGCGCGAGATG
CGGGCATCTGCGGTCTGTCTCGACCTCAATGCCGGTATGGTCACGAAGTG
GTGGGCTTCAGTCTTCCTCCGGACGCAGGACGAACAGGCAACCCCATGTG
ATGAGTGCCTTGCCTGCCTGCCCAGTGCCAATTCCTTCCTCCGCACGCTA
TTCACACGCCCACCCTCAGGCCTCCGTCTCACCTTTCTCCTCGGCAAGAC
AGGGCTTGGTCTCCACTCTACGATCCACCATGGCTGCCGCCGCCGTCTCC
GCTGCCGGCAGCCTGCTGGCTTGGATTCAAGCGACCTTTGAGCCGCTAAC
AACGATTGAATTCAAGGAGGACGTATGCATGGCCGTCTTTATATACGTCA
TAGGCTATGCTGCCTTGGGTGGCTTCTCGCCTTTGATGCACGTCAAGCGC
AAGGCCTGGATCTTGAGCGTGTTGTGTGCCGTAGGGATGAGCTTGGGCTC
AATCCCGTACGTGTGGAAGCTGGCCACTAAGCATGGTTTTGTGACAGGAG
AGATGGTTTACGCCGACGACCGACTCAGCCTCTTTATCATGGCCTTTTTC
ATGACATTCCTGGTGTTGGATCTGGTCATCGGCTTCGGGCACTACGCGGG
GGAGATTGGGCTGTTGACGGGTTGGTTCCACCATTGTTTGTACATGGGAA
TGTGTGTATGGGCGGTGGTGAATGGCATCAGCATCTCAGCCGTGGCGACG
ATGATTATGGAGATCCCTACATTAGTTATGGCCCTTGGTCGTGTATACAA
GGGATTGAGGTCCGATTTTTTGTTTGGTTTTACTTTTTTGGTGACGCGGA
TTTTGTATTTGGGGTTTTACATTTATAGGCTTATGTGTGATGTCAGTCCA
CGGGTGGTGGTCTGGCCAGTGTGTGTGCCGGCAATGATCTTGCACGTATT
TTGGTTCCAGGGATTTATTCAACAGCAGCGGCGGTTGAGAAAGTTGTACT
CGGAGGGAGGAGCAGTGGGAGACAGAGGAAGGGGAGGGAAGCAGGTGATG
GAGGGGGAGAATGAGAAGGGAGGCAAGGCGGCGTAGGATATAAGAGAAAA
GAAGAGGCTTGCATGTTTCCTGAGGGGTACAATGAAGTCGAGAGGAGAAG
GAGGGGGAAAGATGGACGTACGGCATCGAGGGTTAAACAGAGAGGGAAGG
GGCCGCTGTAGGATGCGCCTTCACCAACAGCTGTCACACCCCCCCTTCCC
CCCCTCGTTCTCACACACATGCATATAAATCTTTCATGCATCGCCTTAAG
CTGATCTTCTTTCTTCAAAGTGGCGCCTGGCCATTCCTCTCTCCCATTCA
CTTGTCTGCTTTGTGATGAGAGAGACGACATGGCATTCCTCATTCTTGCC
ATTGGGGAGAAGTAGAATTAAGCACTGACAAAAAGGTAGATTGACCGAAG
AATATAAAGTGAGAGAGACAGGGAGAAAGAACAACAAAGTACCAAGCAAA
AAATTTAATAGAACGGTGCTAT
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protein sequence of NO10G03000.1

>NO10G03000.1-protein ID=NO10G03000.1-protein|Name=NO10G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MRRSIVLMYVCVVGARCGHLRSVSTSMPVWSRSGGLQSSSGRRTNRQPHV
MSALPACPVPIPSSARYSHAHPQASVSPFSSARQGLVSTLRSTMAAAAVS
AAGSLLAWIQATFEPLTTIEFKEDVCMAVFIYVIGYAALGGFSPLMHVKR
KAWILSVLCAVGMSLGSIPYVWKLATKHGFVTGEMVYADDRLSLFIMAFF
MTFLVLDLVIGFGHYAGEIGLLTGWFHHCLYMGMCVWAVVNGISISAVAT
MIMEIPTLVMALGRVYKGLRSDFLFGFTFLVTRILYLGFYIYRLMCDVSP
RVVVWPVCVPAMILHVFWFQGFIQQQRRLRKLYSEGGAVGDRGRGGKQVM
EGENEKGGKAA*
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mRNA from alignment at chr10:833842..835413+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03000.1 ID=NO10G03000.1|Name=NO10G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at chr10:833842..835413+ (Nannochloropsis oceanica)
GGAAGCTGACGGTTGCTGCGCCAAGCAACCGACGGTCGAATTTTGAGGCC
ATGCGGCGCAGCATCGTGTTAATGTATGTGTGTGTTGTGGGCGCGAGATG
CGGGCATCTGCGGTCTGTCTCGACCTCAATGCCGGTATGGTCACGAAGTG
GTGGGCTTCAGTCTTCCTCCGGACGCAGGACGAACAGGCAACCCCATGTG
ATGAGTGCCTTGCCTGCCTGCCCAGTGCCAATTCCTTCCTCCGCACGCTA
TTCACACGCCCACCCTCAGGCCTCCGTCTCACCTTTCTCCTCGGCAAGAC
AGGGCTTGGTCTCCACTCTACGATCCACCATGGCTGCCGCCGCCGTCTCC
GCTGCCGGCAGCCTGCTGGCTTGGATTCAAGCGACCTTTGAGCCGCTAAC
AACGATTGAATTCAAGGAGGACGTATGCATGGCCGTCTTTATATACGTCA
TAGGCTATGCTGCCTTGGGTGGCTTCTCGCCTTTGATGCACGTCAAGCGC
AAGGCCTGGATCTTGAGCGTGTTGTGTGCCGTAGGGATGAGCTTGGGCTC
AATCCCGTACGTGTGGAAGCTGGCCACTAAGCATGGTTTTGTGACAGGAG
AGATGGTTTACGCCGACGACCGACTCAGCCTCTTTATCATGGCCTTTTTC
ATGACATTCCTGGTGTTGGATCTGGTCATCGGCTTCGGGCACTACGCGGG
GGAGATTGGGCTGTTGACGGGTTGGTTCCACCATTGTTTGTACATGGGAA
TGTGTGTATGGGCGGTGGTGAATGGCATCAGCATCTCAGCCGTGGCGACG
ATGATTATGGAGATCCCTACATTAGTTATGGCCCTTGGTCGTGTATACAA
GGGATTGAGGTCCGATTTTTTGTTTGGTTTTACTTTTTTGGTGACGCGGA
TTTTGTATTTGGGGTTTTACATTTATAGGCTTATGTGTGATGTCAGTCCA
CGGGTGGTGGTCTGGCCAGTGTGTGTGCCGGCAATGATCTTGCACGTATT
TTGGTTCCAGGGATTTATTCAACAGCAGCGGCGGTTGAGAAAGTTGTACT
CGGAGGGAGGAGCAGTGGGAGACAGAGGAAGGGGAGGGAAGCAGGTGATG
GAGGGGGAGAATGAGAAGGGAGGCAAGGCGGCGTAGGATATAAGAGAAAA
GAAGAGGCTTGCATGTTTCCTGAGGGGTACAATGAAGTCGAGAGGAGAAG
GAGGGGGAAAGATGGACGTACGGCATCGAGGGTTAAACAGAGAGGGAAGG
GGCCGCTGTAGGATGCGCCTTCACCAACAGCTGTCACACCCCCCCTTCCC
CCCCTCGTTCTCACACACATGCATATAAATCTTTCATGCATCGCCTTAAG
CTGATCTTCTTTCTTCAAAGTGGCGCCTGGCCATTCCTCTCTCCCATTCA
CTTGTCTGCTTTGTGATGAGAGAGACGACATGGCATTCCTCATTCTTGCC
ATTGGGGAGAAGTAGAATTAAGCACTGACAAAAAGGTAGATTGACCGAAG
AATATAAAGTGAGAGAGACAGGGAGAAAGAACAACAAAGTACCAAGCAAA
AAATTTAATAGAACGGTGCTAT
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Coding sequence (CDS) from alignment at chr10:833842..835413+

>NO10G03000.1 ID=NO10G03000.1|Name=NO10G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr10:833842..835413+ (Nannochloropsis oceanica)
ATGCGGCGCAGCATCGTGTTAATGTATGTGTGTGTTGTGGGCGCGAGATG
CGGGCATCTGCGGTCTGTCTCGACCTCAATGCCGGTATGGTCACGAAGTG
GTGGGCTTCAGTCTTCCTCCGGACGCAGGACGAACAGGCAACCCCATGTG
ATGAGTGCCTTGCCTGCCTGCCCAGTGCCAATTCCTTCCTCCGCACGCTA
TTCACACGCCCACCCTCAGGCCTCCGTCTCACCTTTCTCCTCGGCAAGAC
AGGGCTTGGTCTCCACTCTACGATCCACCATGGCTGCCGCCGCCGTCTCC
GCTGCCGGCAGCCTGCTGGCTTGGATTCAAGCGACCTTTGAGCCGCTAAC
AACGATTGAATTCAAGGAGGACGTATGCATGGCCGTCTTTATATACGTCA
TAGGCTATGCTGCCTTGGGTGGCTTCTCGCCTTTGATGCACGTCAAGCGC
AAGGCCTGGATCTTGAGCGTGTTGTGTGCCGTAGGGATGAGCTTGGGCTC
AATCCCGTACGTGTGGAAGCTGGCCACTAAGCATGGTTTTGTGACAGGAG
AGATGGTTTACGCCGACGACCGACTCAGCCTCTTTATCATGGCCTTTTTC
ATGACATTCCTGGTGTTGGATCTGGTCATCGGCTTCGGGCACTACGCGGG
GGAGATTGGGCTGTTGACGGGTTGGTTCCACCATTGTTTGTACATGGGAA
TGTGTGTATGGGCGGTGGTGAATGGCATCAGCATCTCAGCCGTGGCGACG
ATGATTATGGAGATCCCTACATTAGTTATGGCCCTTGGTCGTGTATACAA
GGGATTGAGGTCCGATTTTTTGTTTGGTTTTACTTTTTTGGTGACGCGGA
TTTTGTATTTGGGGTTTTACATTTATAGGCTTATGTGTGATGTCAGTCCA
CGGGTGGTGGTCTGGCCAGTGTGTGTGCCGGCAATGATCTTGCACGTATT
TTGGTTCCAGGGATTTATTCAACAGCAGCGGCGGTTGAGAAAGTTGTACT
CGGAGGGAGGAGCAGTGGGAGACAGAGGAAGGGGAGGGAAGCAGGTGATG
GAGGGGGAGAATGAGAAGGGAGGCAAGGCGGCGTAG
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Synonyms
Publications