NO10G02930.1, NO10G02930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02930.1
Unique NameNO10G02930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1612
Alignment locationchr10:812807..814418 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:812807..814418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02930.1 vs.
Match: EWM25500.1 (hypothetical protein Naga_100032g32 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 2.000e-29
Identity = 126/324 (38.89%), Postives = 162/324 (50.00%), Query Frame = 0 
Query:   22 DVANMQSNVQIHGSRTVSA------KRNRYRYYGARSLRA--TAEDR----VKGEKEGKIAGPGVMTKATMADGHHDISVLAGARPVGIATGDKGAAGLGPAHAVAQAKRNGRQAKKDKLKTERHVKKGLKKGVHKVEKMGKHAGRKFKRVGRKWKHGKKKMLKKQGIPLLAGAGAGAAAAAAAAAAAGSGG-GTGIRKLFRGNTGFEEGFKASSITTEGNWG------DEGLLHRPGQAKPHMTIAGAFARLAEDKLNNLADVSPFPLTDDAPPRRQTKKFKVVVPAFYHGKEFHPPTEPIPLVMGEHHFIHPEMAASLNLVP 327
            D  N +S+    G  TV+A      K  RYR YG R LRA   A+ R         +G+I    VMT A   +G  ++   + AR                    A+A+R  R A ++K K++   KKGLKKG+ K     KH G   K+ GR+ KHG +K+LKK GIPLLA A A A AA AA AA GS G  T  + + R      E     S T  G+W       D+G+     Q  PH+ I   + RL++ K   LA V P      APP RQ  KF+ VVPA YHG+ FHP   P+PLV+GEH F+HP+MAA  N  P
Sbjct:  284 DELNSRSHAINDGMGTVAALNPIFGKDFRYRSYGVRHLRAHEAADPRRAQVAPDSSKGRIIP--VMTSALDQEGGKELFSTSSARET------------------AEARRADRLATREKKKSQAAAKKGLKKGLRKF----KHVG---KQPGRQGKHGNEKVLKKPGIPLLARAAAAALAAGAAFAATGSSGMATDYKNIDRTAQSARE-----SSTLYGSWNSETGNTDKGVFTHVKQI-PHLNIPEIWERLSKAKGERLAPVMPPGPIVHAPPARQPPKFRTVVPATYHGQSFHPSPRPMPLVVGEHAFLHPKMAAHFNHAP 574
The following BLAST results are available for this feature:
BLAST of NO10G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25500.12.000e-2938.89hypothetical protein Naga_100032g32 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02930NO10G02930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02930.1NO10G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02930.1.cds1NO10G02930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02930.1 ID=NO10G02930.1|Name=NO10G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp
ACTGCAGATATAATCACACCGCGGCGTGGAATTAAACGTGACGACGAGGA
GTAGCAACCAAGAAGAGCAACGAGGGATCGCACAACGAGGACGAGGACGA
TGAGTCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGTC
GCAGTCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATGG
CTCGAGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCTA
GGAGCCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGGA
AAGATTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGACA
TCACGATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACAG
GCGATAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGCC
AAACGCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTCA
CGTCAAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGGA
AGCATGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGGC
AAGAAGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCGG
GGCCGGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGAG
GAGGAACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGAA
GGTTTCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGGG
TCTACTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGTG
CTTTTGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTCA
CCTTTCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAATT
TAAGGTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCCA
CCGAACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGAG
ATGGCTGCGTCTTTAAATCTTGTCCCGACGAATTAAGAGGGTACACTGTA
GGATCAAGGTTGTTGCCCGGGACATCGACTTAGGTTGGAGGAGAAGTAGA
AGCAACAGCTCATGGAAGGCACGGCGTTGACGGGACGAAATAAAAAAAAG
GAGAGAGCAACAGGGGCTATGTGTCTGTCTGTTGGTGGCGCGGGTTTGGT
CACGAAGGAGATGTACAGACAGTTCGAAGACATGCTCTTCAACAGTAAAA
CTCATCGCAAAGTTTTGAAGATAACTGAGCTCATTCACAAAGGTAAGAAC
CAGCCGGCCACGTCCCTCCACCGAATTTATAAGCAGTCAAGCCGGATCAA
TGTCTTTTTGCGCCCAAGAAGCAGCACATTTCTTCATGGATGATTAGGCG
TTCAAGAAATTGTTGGATGGGTGGGTTGTGGAGCGGGAGTTTGGACGTCA
GGGAGGGTTGAGGAAATACATAAAATGAAAGGCAGGAGTATGATAGAGCG
AAGGCCCCAAAGACTCAAGGTGGGAAGAGAAAAAAATAATACCTAAAAAT
TTAATTTGAGAG
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protein sequence of NO10G02930.1

>NO10G02930.1-protein ID=NO10G02930.1-protein|Name=NO10G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MSLSRTALLALSCAFLVAVCADVANMQSNVQIHGSRTVSAKRNRYRYYGA
RSLRATAEDRVKGEKEGKIAGPGVMTKATMADGHHDISVLAGARPVGIAT
GDKGAAGLGPAHAVAQAKRNGRQAKKDKLKTERHVKKGLKKGVHKVEKMG
KHAGRKFKRVGRKWKHGKKKMLKKQGIPLLAGAGAGAAAAAAAAAAAGSG
GGTGIRKLFRGNTGFEEGFKASSITTEGNWGDEGLLHRPGQAKPHMTIAG
AFARLAEDKLNNLADVSPFPLTDDAPPRRQTKKFKVVVPAFYHGKEFHPP
TEPIPLVMGEHHFIHPEMAASLNLVPTN*
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mRNA from alignment at chr10:812807..814418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02930.1 ID=NO10G02930.1|Name=NO10G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at chr10:812807..814418- (Nannochloropsis oceanica)
ACTGCAGATATAATCACACCGCGGCGTGGAATTAAACGTGACGACGAGGA
GTAGCAACCAAGAAGAGCAACGAGGGATCGCACAACGAGGACGAGGACGA
TGAGTCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGTC
GCAGTCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATGG
CTCGAGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCTA
GGAGCCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGGA
AAGATTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGACA
TCACGATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACAG
GCGATAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGCC
AAACGCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTCA
CGTCAAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGGA
AGCATGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGGC
AAGAAGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCGG
GGCCGGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGAG
GAGGAACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGAA
GGTTTCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGGG
TCTACTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGTG
CTTTTGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTCA
CCTTTCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAATT
TAAGGTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCCA
CCGAACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGAG
ATGGCTGCGTCTTTAAATCTTGTCCCGACGAATTAAGAGGGTACACTGTA
GGATCAAGGTTGTTGCCCGGGACATCGACTTAGGTTGGAGGAGAAGTAGA
AGCAACAGCTCATGGAAGGCACGGCGTTGACGGGACGAAATAAAAAAAAG
GAGAGAGCAACAGGGGCTATGTGTCTGTCTGTTGGTGGCGCGGGTTTGGT
CACGAAGGAGATGTACAGACAGTTCGAAGACATGCTCTTCAACAGTAAAA
CTCATCGCAAAGTTTTGAAGATAACTGAGCTCATTCACAAAGGTAAGAAC
CAGCCGGCCACGTCCCTCCACCGAATTTATAAGCAGTCAAGCCGGATCAA
TGTCTTTTTGCGCCCAAGAAGCAGCACATTTCTTCATGGATGATTAGGCG
TTCAAGAAATTGTTGGATGGGTGGGTTGTGGAGCGGGAGTTTGGACGTCA
GGGAGGGTTGAGGAAATACATAAAATGAAAGGCAGGAGTATGATAGAGCG
AAGGCCCCAAAGACTCAAGGTGGGAAGAGAAAAAAATAATACCTAAAAAT
TTAATTTGAGAG
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Coding sequence (CDS) from alignment at chr10:812807..814418-

>NO10G02930.1 ID=NO10G02930.1|Name=NO10G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr10:812807..814418- (Nannochloropsis oceanica)
ATGAGTCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGT
CGCAGTCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATG
GCTCGAGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCT
AGGAGCCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGG
AAAGATTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGAC
ATCACGATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACA
GGCGATAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGC
CAAACGCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTC
ACGTCAAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGG
AAGCATGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGG
CAAGAAGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCG
GGGCCGGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGA
GGAGGAACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGA
AGGTTTCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGG
GTCTACTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGT
GCTTTTGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTC
ACCTTTCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAAT
TTAAGGTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCC
ACCGAACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGA
GATGGCTGCGTCTTTAAATCTTGTCCCGACGAATTAA
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Synonyms
Publications