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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:809581..812597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02920.1 vs.
Match: EWM25504.1 (dihydrolipoamide branched chain transacylase e2 [Nannochloropsis gaditana]) HSP 1 Score: 632.9 bits (1631), Expect = 1.100e-177 Identity = 375/569 (65.91%), Postives = 422/569 (74.17%), Query Frame = 0
Query: 70 QYRASSMSALEEPPYDYVSSTPSSTPSPPPAASAPSGGGKIMPFLLADIGEGIAEVELMQWFVQEGESIKQFDRVCEVQSDKATVEISSRYDGVVSRVHHPVGAVVKVGSALIDIEVARPNNHTAAATLAAAPTMNNADLPSPAMMAAAAPVTSPPL--LPTVSLQQQPQHHLPQHKQSERASNINREGNRGDIVPATPAVRRWAKEYGVDLAFVRATGPQGRVLKGDVLNHISTRNGGGGIGMLATTAST---STPAATAATAAAAAAAAAVAPSSPSFQLNGAATAMKASSSSSPSSSTNPPHSSPLSALHLTASQRVPIRGVMRQMVKSMNASLKIPHFGYQDEVCMDKAAAFRSSLRPLAEEQGLKFTYLPLMLKAASLALLRFPILNASLSEDEKEVVYHSSHEIGVAMATSKGLIVPVLRKVQEKSLMEIARELAVFQCKAEGQGGREGGQGGFKEEDFQGATFSLSNIGSLGGTYMDAKIVPPQVAIGAVGRIQMLPRY--VQASEG-EVGREGGPVVMPVRVMAISWAGDHRVVDGATMAKFSNLWKKYLEEPALMLAETR 631
Q R SMSAL+EPPYD VSS P S+P A A +GGGK++PFLLADIGEGIAEVELMQWFVQEGE++KQFDRVCEVQSDKATVEISSRYDGVV RV HPVG+VVKVGSALIDIEV N ++ ATLA APTMNNAD+PSPA A AA V+SPPL + +Q Q H + + N G+IVP TPAVRR AKE+GVDL+ VR TGP+GRVLKGDVL+ I+ G G+ AS PA+ T AA+ A S PS SS P P SA LT +RVP+RG+MRQMVKSMNASLKIPHFGYQDEVCMDKAA R+SLRP AE QG K TYLP+MLKAASLALLR+P+LNASLS DE+E++YH H IGVAMATSKGL+VPVLRKVQE+SL+EIA ELA FQ KAE GG +GG GGFKEEDFQGATFS+SNIGS+GGTYMDAKIVPPQVAIGA+GRIQ LPR+ + EG +V E G VV+P +VMAISWAGDHRVVDGATMAKFSNLWK YLEEPA MLAETR
Sbjct: 99 QRRRLSMSALQEPPYDEVSSGPPSSP-----AGASAGGGKLVPFLLADIGEGIAEVELMQWFVQEGENVKQFDRVCEVQSDKATVEISSRYDGVVRRVLHPVGSVVKVGSALIDIEVGGQENSSSTATLATAPTMNNADVPSPAEAAEAALVSSPPLGGSEPLPVQAQASHSSTADLKKGPETTYNSRDMTGEIVPTTPAVRRLAKEHGVDLSLVRPTGPEGRVLKGDVLDFIAAHQGHVGLPPSFFPASPLPPGVPASATGTRPVPGEAASPAASPPS---------PVPPHPLGSSSFLKPAVLPPFSAAALTEPKRVPVRGIMRQMVKSMNASLKIPHFGYQDEVCMDKAAGLRASLRPFAEAQGFKLTYLPIMLKAASLALLRYPLLNASLSADEREIIYHPDHHIGVAMATSKGLVVPVLRKVQERSLLEIAGELADFQRKAE--GGDQGG-GGFKEEDFQGATFSMSNIGSMGGTYMDAKIVPPQVAIGAIGRIQTLPRFGPARTVEGSQVSSEKGLVVLPTKVMAISWAGDHRVVDGATMAKFSNLWKSYLEEPATMLAETR 650
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02920.1 ID=NO10G02920.1|Name=NO10G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2846bp
ACACCCACAGTACCAGCCATGTTTGCCAGCGGCACCAGACGCAGTGTCTC
CCGCTTGGTGGCCACGTGCGCGCATCGTTGTTCCCGCAGCTCCCAGACAT
GGATCACAGGGGTGGCCAGGGGCTTGATCGGCGAAATCGGTACGAAAAAT
AGCATCACTGGTCATTTCAGGGGTACCGGGGCCGTGGTCCTCCTCCCAAG
CCGCGAGCAGCCGCCCCGAATTCAGCAGTATCGAGCCTCTTCTATGAGCG
CGCTGGAGGAACCGCCCTACGACTACGTTTCGTCCACGCCTTCCTCCACA
CCCTCACCACCTCCCGCTGCCTCCGCGCCCAGCGGCGGCGGGAAGATCAT
GCCTTTCCTGCTAGCTGATATTGGGGAGGGCATTGCCGAAGTGGAGCTCA
TGCAATGGTTTGTGCAAGAAGGGGAGAGCATTAAGCAGTTCGATAGGGTA
TGTGAGGTTCAATCGGACAAGGCCACGGTTGAGATTTCCTCGCGCTACGA
CGGCGTTGTCTCGAGAGTGCATCACCCCGTCGGGGCGGTTGTGAAAGTAG
GGAGCGCCCTGATCGACATTGAAGTGGCAAGACCAAACAACCACACCGCT
GCCGCCACGCTCGCTGCGGCCCCCACCATGAACAACGCCGACCTCCCTTC
TCCAGCCATGATGGCAGCAGCGGCTCCTGTCACTTCTCCTCCATTGCTCC
CAACGGTGTCTCTCCAGCAGCAGCCACAGCATCATCTACCACAGCATAAG
CAGTCAGAGAGGGCCAGTAATATTAATCGTGAGGGTAACAGGGGGGATAT
TGTGCCTGCTACGCCCGCTGTCCGTCGGTGGGCGAAAGAGTATGGCGTGG
ACTTGGCTTTTGTCCGAGCGACGGGGCCGCAAGGCCGGGTCCTGAAGGGC
GATGTCTTAAATCACATTAGCACACGCAACGGCGGTGGTGGCATTGGCAT
GCTGGCTACAACTGCTTCTACTTCTACTCCTGCCGCTACAGCTGCTACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCCATCTTCTCCCTCCTTT
CAGCTGAACGGCGCTGCCACGGCCATGAAAGCATCCTCCTCCTCCTCTCC
CTCCTCATCTACTAACCCCCCCCATTCCTCCCCTCTCTCCGCCTTGCACC
TCACCGCCTCCCAGCGAGTGCCCATACGGGGGGTGATGCGTCAGATGGTG
AAGTCCATGAACGCCTCTCTGAAAATTCCTCATTTCGGGTACCAAGACGA
GGTATGCATGGACAAAGCCGCCGCGTTCCGCTCCTCTCTCCGTCCCTTGG
CAGAGGAGCAAGGCCTGAAATTCACGTATCTACCTCTGATGCTCAAGGCG
GCAAGTTTGGCCCTGTTGAGATTCCCGATTCTGAATGCGAGCTTGTCGGA
GGATGAGAAGGAGGTGGTGTATCACAGCTCGCACGAAATAGGAGTGGCCA
TGGCAACGAGCAAAGGGCTGATTGTTCCCGTCTTGCGGAAAGTTCAAGAG
AAGTCCCTGATGGAGATCGCGAGGGAGTTGGCCGTGTTTCAATGCAAGGC
CGAGGGGCAGGGAGGGAGGGAAGGAGGACAGGGTGGGTTCAAAGAGGAGG
ATTTCCAGGGGGCCACATTCTCGCTGAGCAATATTGGAAGCCTGGGGGGT
ACGTACATGGATGCTAAGATCGTTCCTCCTCAAGTGGCGATAGGCGCGGT
GGGGAGGATTCAGATGTTGCCGCGGTATGTGCAGGCGTCCGAAGGGGAGG
TAGGGAGGGAGGGAGGCCCTGTGGTGATGCCGGTGAGGGTGATGGCTATT
TCGTGGGCGGGGGATCATAGGGTGGTGGATGGGGCGACCATGGCAAAATT
TTCGAATTTGTGGAAGAAGTATCTGGAAGAGCCGGCGTTGATGTTGGCGG
AAACGCGTTAAGAAGGAGGAGCAAGGGAGGGAGACAGGGAGGAAGGGAGT
GGAAGGAACGGATCAGTAGAGCTGCTACGCTGGCCGACACGTTTCCAGGG
AGAGATGGGGATGGAAAAGGAAGTGGAAGGTCCGGACAGTGGGGCGAGGT
TAGCGTGTTTCTTGCACCTCGGAGGTGTCCTTATCTTTTGACCTCTCCTT
TATCTGGTGATCATGTCCACGCTCGTTGATGGAGATACCAACGTACTTGG
CGGCGGTTTGTTTGGATTTGAGAAAGACGCCGTCGTCCTATGTGAGAGGA
AAGAAGGGAAGAGGGATGGAAGGAGGGAAGGTGGGAGGGAGGATGTAAAG
TAGTGCAGTGAGTTGAAGGTTTGTTGTGTTATTTGTCTCGGCAATTATGT
GTACGGGGGGAAAGGGAGGGAAGGAGGTATCTCGTCTTTGTATATACGTG
TGAAAAAAGAGGAAATTGAGAGACAGAGGGATAATGTAGATATGTGTGTA
TGTGGGAGGAAAAAGGAATGAACCTAGCACTTAACTTTTCATTTGTTGTC
GTGTACAATCATGTGAAGATGAGGAAGAAAGAAAGGAAAAAAAAGAAGAT
AGAGTAAGGAAAATGGGAAGAAGAAGGGGTGAGGAAGGAGAAGGAAGAGA
GAGAAGGAGACATGAGTGTACGTAGATGACTGAGAGAAGATGATGTCACT
TGTTCTTTACTCCTCCATTAGCATCCCGTTATTTGTCAGTTGCTTGCTTG
AAAAATAATATCAAATAGGAACACTAATACAGAATGTGTAATTTAGAAGA
AAGAAACGAACGAAGGAAAAATATTGGCCGTACTCCTTGTCCCTCCCACC
TAGCTCTGGAGATAGACTTGGAAAAAAAGTTTAACCCAGACGAGAGGAAA
CCTACCCACCATGTAGCAAAGAAAAGAATGAAATTATAGCGACTCA back to topprotein sequence of NO10G02920.1 >NO10G02920.1-protein ID=NO10G02920.1-protein|Name=NO10G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MFASGTRRSVSRLVATCAHRCSRSSQTWITGVARGLIGEIGTKNSITGHF
RGTGAVVLLPSREQPPRIQQYRASSMSALEEPPYDYVSSTPSSTPSPPPA
ASAPSGGGKIMPFLLADIGEGIAEVELMQWFVQEGESIKQFDRVCEVQSD
KATVEISSRYDGVVSRVHHPVGAVVKVGSALIDIEVARPNNHTAAATLAA
APTMNNADLPSPAMMAAAAPVTSPPLLPTVSLQQQPQHHLPQHKQSERAS
NINREGNRGDIVPATPAVRRWAKEYGVDLAFVRATGPQGRVLKGDVLNHI
STRNGGGGIGMLATTASTSTPAATAATAAAAAAAAAVAPSSPSFQLNGAA
TAMKASSSSSPSSSTNPPHSSPLSALHLTASQRVPIRGVMRQMVKSMNAS
LKIPHFGYQDEVCMDKAAAFRSSLRPLAEEQGLKFTYLPLMLKAASLALL
RFPILNASLSEDEKEVVYHSSHEIGVAMATSKGLIVPVLRKVQEKSLMEI
ARELAVFQCKAEGQGGREGGQGGFKEEDFQGATFSLSNIGSLGGTYMDAK
IVPPQVAIGAVGRIQMLPRYVQASEGEVGREGGPVVMPVRVMAISWAGDH
RVVDGATMAKFSNLWKKYLEEPALMLAETR* back to topmRNA from alignment at chr10:809581..812597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02920.1 ID=NO10G02920.1|Name=NO10G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3017bp|location=Sequence derived from alignment at chr10:809581..812597- (Nannochloropsis oceanica)
ACACCCACAGTACCAGCCATGTTTGCCAGCGGCACCAGACGCAGTGTCTC
CCGCTTGGTGGCCACGTGCGCGCATCGTTGTTCCCGCAGCTCCCAGGTAA
GCAACAGAACAGATCAATTTCAGCGAGTGCCTTTCCTGTATTAACACTCC
TCTCTCGCGACCCCACCAGACATGGATCACAGGGGTGGCCAGGGGCTTGA
TCGGCGAAATCGGTACGAAAAATAGCATCACTGGTCATTTCAGGGGTACC
GGGGCCGTGGTCCTCCTCCCAAGCCGCGAGCAGCCGCCCCGAATTCAGCA
GGTGAGTGTCAAGGATAAGCAGGACGACGAACCTTGCCATCACACCAGCA
GCACTGACCGAGGCACCCTTATACACATACATACTCACCATACTCACAGT
ATCGAGCCTCTTCTATGAGCGCGCTGGAGGAACCGCCCTACGACTACGTT
TCGTCCACGCCTTCCTCCACACCCTCACCACCTCCCGCTGCCTCCGCGCC
CAGCGGCGGCGGGAAGATCATGCCTTTCCTGCTAGCTGATATTGGGGAGG
GCATTGCCGAAGTGGAGCTCATGCAATGGTTTGTGCAAGAAGGGGAGAGC
ATTAAGCAGTTCGATAGGGTATGTGAGGTTCAATCGGACAAGGCCACGGT
TGAGATTTCCTCGCGCTACGACGGCGTTGTCTCGAGAGTGCATCACCCCG
TCGGGGCGGTTGTGAAAGTAGGGAGCGCCCTGATCGACATTGAAGTGGCA
AGACCAAACAACCACACCGCTGCCGCCACGCTCGCTGCGGCCCCCACCAT
GAACAACGCCGACCTCCCTTCTCCAGCCATGATGGCAGCAGCGGCTCCTG
TCACTTCTCCTCCATTGCTCCCAACGGTGTCTCTCCAGCAGCAGCCACAG
CATCATCTACCACAGCATAAGCAGTCAGAGAGGGCCAGTAATATTAATCG
TGAGGGTAACAGGGGGGATATTGTGCCTGCTACGCCCGCTGTCCGTCGGT
GGGCGAAAGAGTATGGCGTGGACTTGGCTTTTGTCCGAGCGACGGGGCCG
CAAGGCCGGGTCCTGAAGGGCGATGTCTTAAATCACATTAGCACACGCAA
CGGCGGTGGTGGCATTGGCATGCTGGCTACAACTGCTTCTACTTCTACTC
CTGCCGCTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTT
GCTCCATCTTCTCCCTCCTTTCAGCTGAACGGCGCTGCCACGGCCATGAA
AGCATCCTCCTCCTCCTCTCCCTCCTCATCTACTAACCCCCCCCATTCCT
CCCCTCTCTCCGCCTTGCACCTCACCGCCTCCCAGCGAGTGCCCATACGG
GGGGTGATGCGTCAGATGGTGAAGTCCATGAACGCCTCTCTGAAAATTCC
TCATTTCGGGTACCAAGACGAGGTATGCATGGACAAAGCCGCCGCGTTCC
GCTCCTCTCTCCGTCCCTTGGCAGAGGAGCAAGGCCTGAAATTCACGTAT
CTACCTCTGATGCTCAAGGCGGCAAGTTTGGCCCTGTTGAGATTCCCGAT
TCTGAATGCGAGCTTGTCGGAGGATGAGAAGGAGGTGGTGTATCACAGCT
CGCACGAAATAGGAGTGGCCATGGCAACGAGCAAAGGGCTGATTGTTCCC
GTCTTGCGGAAAGTTCAAGAGAAGTCCCTGATGGAGATCGCGAGGGAGTT
GGCCGTGTTTCAATGCAAGGCCGAGGGGCAGGGAGGGAGGGAAGGAGGAC
AGGGTGGGTTCAAAGAGGAGGATTTCCAGGGGGCCACATTCTCGCTGAGC
AATATTGGAAGCCTGGGGGGTACGTACATGGATGCTAAGATCGTTCCTCC
TCAAGTGGCGATAGGCGCGGTGGGGAGGATTCAGATGTTGCCGCGGTATG
TGCAGGCGTCCGAAGGGGAGGTAGGGAGGGAGGGAGGCCCTGTGGTGATG
CCGGTGAGGGTGATGGCTATTTCGTGGGCGGGGGATCATAGGGTGGTGGA
TGGGGCGACCATGGCAAAATTTTCGAATTTGTGGAAGAAGTATCTGGAAG
AGCCGGCGTTGATGTTGGCGGAAACGCGTTAAGAAGGAGGAGCAAGGGAG
GGAGACAGGGAGGAAGGGAGTGGAAGGAACGGATCAGTAGAGCTGCTACG
CTGGCCGACACGTTTCCAGGGAGAGATGGGGATGGAAAAGGAAGTGGAAG
GTCCGGACAGTGGGGCGAGGTTAGCGTGTTTCTTGCACCTCGGAGGTGTC
CTTATCTTTTGACCTCTCCTTTATCTGGTGATCATGTCCACGCTCGTTGA
TGGAGATACCAACGTACTTGGCGGCGGTTTGTTTGGATTTGAGAAAGACG
CCGTCGTCCTATGTGAGAGGAAAGAAGGGAAGAGGGATGGAAGGAGGGAA
GGTGGGAGGGAGGATGTAAAGTAGTGCAGTGAGTTGAAGGTTTGTTGTGT
TATTTGTCTCGGCAATTATGTGTACGGGGGGAAAGGGAGGGAAGGAGGTA
TCTCGTCTTTGTATATACGTGTGAAAAAAGAGGAAATTGAGAGACAGAGG
GATAATGTAGATATGTGTGTATGTGGGAGGAAAAAGGAATGAACCTAGCA
CTTAACTTTTCATTTGTTGTCGTGTACAATCATGTGAAGATGAGGAAGAA
AGAAAGGAAAAAAAAGAAGATAGAGTAAGGAAAATGGGAAGAAGAAGGGG
TGAGGAAGGAGAAGGAAGAGAGAGAAGGAGACATGAGTGTACGTAGATGA
CTGAGAGAAGATGATGTCACTTGTTCTTTACTCCTCCATTAGCATCCCGT
TATTTGTCAGTTGCTTGCTTGAAAAATAATATCAAATAGGAACACTAATA
CAGAATGTGTAATTTAGAAGAAAGAAACGAACGAAGGAAAAATATTGGCC
GTACTCCTTGTCCCTCCCACCTAGCTCTGGAGATAGACTTGGAAAAAAAG
TTTAACCCAGACGAGAGGAAACCTACCCACCATGTAGCAAAGAAAAGAAT
GAAATTATAGCGACTCA back to topCoding sequence (CDS) from alignment at chr10:809581..812597- >NO10G02920.1 ID=NO10G02920.1|Name=NO10G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr10:809581..812597- (Nannochloropsis oceanica)
ATGTTTGCCAGCGGCACCAGACGCAGTGTCTCCCGCTTGGTGGCCACGTG
CGCGCATCGTTGTTCCCGCAGCTCCCAGACATGGATCACAGGGGTGGCCA
GGGGCTTGATCGGCGAAATCGGTACGAAAAATAGCATCACTGGTCATTTC
AGGGGTACCGGGGCCGTGGTCCTCCTCCCAAGCCGCGAGCAGCCGCCCCG
AATTCAGCAGTATCGAGCCTCTTCTATGAGCGCGCTGGAGGAACCGCCCT
ACGACTACGTTTCGTCCACGCCTTCCTCCACACCCTCACCACCTCCCGCT
GCCTCCGCGCCCAGCGGCGGCGGGAAGATCATGCCTTTCCTGCTAGCTGA
TATTGGGGAGGGCATTGCCGAAGTGGAGCTCATGCAATGGTTTGTGCAAG
AAGGGGAGAGCATTAAGCAGTTCGATAGGGTATGTGAGGTTCAATCGGAC
AAGGCCACGGTTGAGATTTCCTCGCGCTACGACGGCGTTGTCTCGAGAGT
GCATCACCCCGTCGGGGCGGTTGTGAAAGTAGGGAGCGCCCTGATCGACA
TTGAAGTGGCAAGACCAAACAACCACACCGCTGCCGCCACGCTCGCTGCG
GCCCCCACCATGAACAACGCCGACCTCCCTTCTCCAGCCATGATGGCAGC
AGCGGCTCCTGTCACTTCTCCTCCATTGCTCCCAACGGTGTCTCTCCAGC
AGCAGCCACAGCATCATCTACCACAGCATAAGCAGTCAGAGAGGGCCAGT
AATATTAATCGTGAGGGTAACAGGGGGGATATTGTGCCTGCTACGCCCGC
TGTCCGTCGGTGGGCGAAAGAGTATGGCGTGGACTTGGCTTTTGTCCGAG
CGACGGGGCCGCAAGGCCGGGTCCTGAAGGGCGATGTCTTAAATCACATT
AGCACACGCAACGGCGGTGGTGGCATTGGCATGCTGGCTACAACTGCTTC
TACTTCTACTCCTGCCGCTACAGCTGCTACTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGTTGCTCCATCTTCTCCCTCCTTTCAGCTGAACGGCGCTGCC
ACGGCCATGAAAGCATCCTCCTCCTCCTCTCCCTCCTCATCTACTAACCC
CCCCCATTCCTCCCCTCTCTCCGCCTTGCACCTCACCGCCTCCCAGCGAG
TGCCCATACGGGGGGTGATGCGTCAGATGGTGAAGTCCATGAACGCCTCT
CTGAAAATTCCTCATTTCGGGTACCAAGACGAGGTATGCATGGACAAAGC
CGCCGCGTTCCGCTCCTCTCTCCGTCCCTTGGCAGAGGAGCAAGGCCTGA
AATTCACGTATCTACCTCTGATGCTCAAGGCGGCAAGTTTGGCCCTGTTG
AGATTCCCGATTCTGAATGCGAGCTTGTCGGAGGATGAGAAGGAGGTGGT
GTATCACAGCTCGCACGAAATAGGAGTGGCCATGGCAACGAGCAAAGGGC
TGATTGTTCCCGTCTTGCGGAAAGTTCAAGAGAAGTCCCTGATGGAGATC
GCGAGGGAGTTGGCCGTGTTTCAATGCAAGGCCGAGGGGCAGGGAGGGAG
GGAAGGAGGACAGGGTGGGTTCAAAGAGGAGGATTTCCAGGGGGCCACAT
TCTCGCTGAGCAATATTGGAAGCCTGGGGGGTACGTACATGGATGCTAAG
ATCGTTCCTCCTCAAGTGGCGATAGGCGCGGTGGGGAGGATTCAGATGTT
GCCGCGGTATGTGCAGGCGTCCGAAGGGGAGGTAGGGAGGGAGGGAGGCC
CTGTGGTGATGCCGGTGAGGGTGATGGCTATTTCGTGGGCGGGGGATCAT
AGGGTGGTGGATGGGGCGACCATGGCAAAATTTTCGAATTTGTGGAAGAA
GTATCTGGAAGAGCCGGCGTTGATGTTGGCGGAAACGCGTTAA back to top
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