NO10G02910.2, NO10G02910.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02910.2
Unique NameNO10G02910.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length514
Alignment locationchr10:808801..809545 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:808801..809545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02910.2 vs.
Match: EWM25524.1 (hypothetical protein Naga_100032g34 [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 4.500e-50
Identity = 101/137 (73.72%), Postives = 115/137 (83.94%), Query Frame = 0
Query:    1 MAARLANFRNVVLMLKDLPSAVHFYGKNGLGLTLKRQGEMTAEFDTGGPPLVLKAVEGEAMRSTGYSPFLCFDVMDMDSTVVRLLQLGASLDGPVKYPAYGKVGVVRSPDGHMIGLFEPGDAASSMDSSEEGRTQQP 138
            MA+RLANFRNVVLML+DLPSAV FYGK GLGL L R+ +MTAEFDTGG PLVLK  +GEAM STGYSP LCFDV+DMD+T+VRLLQLGASLDGP+KYP YGK+G++RSPDGHMIGLFEP    SS  +  E   +QP
Sbjct:    1 MASRLANFRNVVLMLRDLPSAVTFYGKEGLGLALTRRSDMTAEFDTGGTPLVLKVADGEAMCSTGYSPLLCFDVVDMDTTIVRLLQLGASLDGPIKYPLYGKIGMIRSPDGHMIGLFEPSIQPSS-PAPPEAEDRQP 136          
The following BLAST results are available for this feature:
BLAST of NO10G02910.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25524.14.500e-5073.72hypothetical protein Naga_100032g34 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02910NO10G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02910.2NO10G02910.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02910.2.cds1NO10G02910.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02910.2.cds2NO10G02910.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02910.2.cds3NO10G02910.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02910.2 ID=NO10G02910.2|Name=NO10G02910.2|organism=Nannochloropsis oceanica|type=mRNA|length=514bp
ACAGGCACACGAGCATTTTGATTCAAGAAGAGAGTAAAGGAGCCAAGGGG
GTGCCAATCAGAGACAAATGGCAGCGCGCCTAGCAAACTTTAGAAACGTG
GTCCTAATGCTCAAGGACCTGCCGTCCGCCGTACACTTTTACGGTAAAAA
TGGACTGGGCCTAACTTTGAAGCGGCAGGGTGAGATGACTGCCGAATTCG
ACACAGGGGGACCGCCCCTTGTCCTGAAGGCTGTAGAGGGGGAGGCGATG
CGGAGTACAGGCTATTCCCCCTTTTTATGCTTTGACGTGATGGACATGGA
TAGCACAGTGGTGCGATTACTCCAGTTGGGCGCGTCTTTGGACGGGCCGG
TCAAGTACCCGGCGTATGGCAAGGTGGGCGTGGTCCGTAGTCCCGACGGT
CATATGATTGGCCTCTTTGAGCCGGGCGACGCCGCCTCCAGCATGGATAG
TAGCGAGGAGGGAAGAACCCAACAACCGACAACACCACAATCACCACCGT
CTTCGCACGCCTAA
back to top

protein sequence of NO10G02910.2

>NO10G02910.2-protein ID=NO10G02910.2-protein|Name=NO10G02910.2|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MAARLANFRNVVLMLKDLPSAVHFYGKNGLGLTLKRQGEMTAEFDTGGPP
LVLKAVEGEAMRSTGYSPFLCFDVMDMDSTVVRLLQLGASLDGPVKYPAY
GKVGVVRSPDGHMIGLFEPGDAASSMDSSEEGRTQQPTTPQSPPSSHA*
back to top

mRNA from alignment at chr10:808801..809545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02910.2 ID=NO10G02910.2|Name=NO10G02910.2|organism=Nannochloropsis oceanica|type=mRNA|length=745bp|location=Sequence derived from alignment at chr10:808801..809545+ (Nannochloropsis oceanica)
ACAGGCACACGAGCATTTTGATTCAAGAAGAGAGTAAAGGAGCCAAGGGG GTGCCAATCAGAGACAAATGGCAGCGCGCCTAGCAAACTTTAGGTACTTC CACAAGTTCCCATGCTCGACCTCCCCACCCCCCAGCCCTTATTTCCTTCT CATATTTCCTCTAGAAACGTGGTCCTAATGCTCAAGGACCTGCCGTCCGC CGTACACTTTTACGGTAAAAATGGACTGGGCCTAACTTTGAAGCGGCAGG GTGAGATGACTGCCGAATTCGACACAGGGGGACCGCCCCTTGTCCTGAAG GCTGTAGAGGGGGAGGCGATGCGGAGTACAGGCTATTCCCCCTTTTTATG CTTTGACGTGATGGACATGGATAGCACAGTGGTGCGATTACTCCAGTTGG GCGCGTCTTTGGACGGGCCGGTCAAGTACCCGGCGTATGGCAAGGTAAGT TTAGATACGGTGGCGGAAGGTGTGTGGTCACGTAGGATGCGAGTGGGATT AGAAGAGATATCGCTGGGTGCTTTTCGGTAGTGTGGACCGAGTAAAGAGG CATGGGTGCTGTTGCATCAACTGTTTGTTGTCCTTTCATGCATTTGCTTA CTAGGTGGGCGTGGTCCGTAGTCCCGACGGTCATATGATTGGCCTCTTTG AGCCGGGCGACGCCGCCTCCAGCATGGATAGTAGCGAGGAGGGAAGAACC CAACAACCGACAACACCACAATCACCACCGTCTTCGCACGCCTAA
back to top

Coding sequence (CDS) from alignment at chr10:808801..809545+

>NO10G02910.2 ID=NO10G02910.2|Name=NO10G02910.2|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr10:808801..809545+ (Nannochloropsis oceanica)
ATGGCAGCGCGCCTAGCAAACTTTAGAAACGTGGTCCTAATGCTCAAGGA
CCTGCCGTCCGCCGTACACTTTTACGGTAAAAATGGACTGGGCCTAACTT
TGAAGCGGCAGGGTGAGATGACTGCCGAATTCGACACAGGGGGACCGCCC
CTTGTCCTGAAGGCTGTAGAGGGGGAGGCGATGCGGAGTACAGGCTATTC
CCCCTTTTTATGCTTTGACGTGATGGACATGGATAGCACAGTGGTGCGAT
TACTCCAGTTGGGCGCGTCTTTGGACGGGCCGGTCAAGTACCCGGCGTAT
GGCAAGGTGGGCGTGGTCCGTAGTCCCGACGGTCATATGATTGGCCTCTT
TGAGCCGGGCGACGCCGCCTCCAGCATGGATAGTAGCGAGGAGGGAAGAA
CCCAACAACCGACAACACCACAATCACCACCGTCTTCGCACGCCTAA
back to top
Synonyms
Publications